Building of a cassava information resource and understanding of environmental stress responses
| Project/Area Number |
21710205
|
|---|
| Research Category |
Grant-in-Aid for Young Scientists (B)
|
| Allocation Type | Single-year Grants |
|---|
| Research Field |
Applied genomics
|
|---|
| Research Institution | The Institute of Physical and Chemical Research |
|---|
Principal Investigator |
SAKURAI Tetsuya The Institute of Physical and Chemical Research, ゲノム情報統合化ユニット, ユニットリーダー (90415167)
|
|---|
| Project Period (FY) |
2009 – 2010
|
| Project Status |
Completed (Fiscal Year 2010)
|
| Budget Amount *help |
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2010: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2009: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
|
|---|
| Keywords | 植物 / 作物 / ゲノム / トランスクリプトーム / 環境応答 / データベース / ゲノミクス |
|---|
| Research Abstract |
We developed a oligo custom microarray chip which includes approximately 22,000 60-mer probes. The microarray chip was designed by using the ESTs from GenBank (NCBI) and flanking sequences of RIKEN cassava full-length cDNA. Using the microarray chip, we were able to outline gene expression among 3 cassava accession and the 2 stress experimental conditions. Moreover, we performed gene expression profiling via CAGE method, obtained the different gene expression profiles from the 2 methodological aspects.
|
Report
(3 results)
Research Products
(4 results)
