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Activity of copper enzymes and new development of quantum calculation

Research Project

Project/Area Number 21750063
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Inorganic chemistry
Research InstitutionKyushu University

Principal Investigator

SHIOTA Yoshihito  九州大学, 先導物質化学研究所, 助教 (70335991)

Project Period (FY) 2009 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords基礎化学 / 無機化学 / 理論化学 / 遷移状態 / メタン活性化 / 金属錯体 / 理論計算 / 密度汎関数法 / スピンクロスオーバー / 原子価互変異性 / 密度汎関数理論 / 鉄錯体 / コバルト錯体 / ミニマムクロッシングポイント / 量子化学 / 遷移金属錯体 / 金属酵素 / 電子状態 / 酸素活性化
Research Abstract

Methane hydroxylation at the dinuclear copper site of particulate methane monooxygenase (pMMO) is studied by using density functional theory calculations. The electronic, structural, and reactive properties of a possible dinuclear copper species (n-oxo)(n-hydroxo)CuIICuIIIare discussed with respect to the C-H bond activation of methane.We propose that the Tyr374 residue in the second coordination sphere of the dicopper site donates an H atom to the n-n2:n2-peroxoCuIICuIIspecies and the resultant (n-oxo)(n-hydroxo)CuIICuIIIspecies is able to hydroxylate methane. This species for methane hydroxylation is more favorable in reactivity than the bis(n-oxo)CuIIICuIIIspecies. The H-atom transfer or proton-coupled electron transfer from the tyrosine residue can reasonably induce the O-O bond dissociation of the n-n2:n2-peroxoCuIICuIIspecies to form the reactive (n-oxo)(n-hydroxo)CuIICuIIIspecies, which is expected to be an active species for the conversion of methane to methanol at the dicopper site of pMMO

Report

(5 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (48 results)

All 2013 2012 2011 2010 2009 Other

All Journal Article (22 results) (of which Peer Reviewed: 22 results) Presentation (23 results) Remarks (3 results)

  • [Journal Article] DFT Study of the Mechanism for Methane Hydroxylation by Soluble Methane Monooxygenase (sMMO)2013

    • Author(s)
      Effects of Oxidation State, Spin State, and Coordination Number, S.-P. Huang, Y. Shiota, K. Yoshizawa
    • Journal Title

      Dalton Trans

      Volume: 42 Pages: 1011-1023

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thiophene-Fused Bisdehydro[12]annulene That Undergoes Transannular Alkyne Cycloaddition by Either Light or Heat2013

    • Author(s)
      A. Fukazawa, H. Oshima, Y. Shiota, S. Takahashi, K. Yoshizawa, S. Yamaguchi
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 135 Issue: 5 Pages: 1731-1734

    • DOI

      10.1021/ja3126849

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DFT Study of the Mechanism for Methane Hydroxylation by Solube Methane Monooxygenase (sMMO) : Effects of Oxidation State, Spin State, and Coordinaton Number2013

    • Author(s)
      Huang Shu-Ping, et al
    • Journal Title

      Dalton Trans.

      Volume: 42 Issue: 4 Pages: 1011-1023

    • DOI

      10.1039/c2dt31304a

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reversible Electron Transfer in a Linear {Fe2Co} Trinuclear Complex Induced by Thermal Treatment and Photoirraditaion2012

    • Author(s)
      T. Liu, D.-P. Dong, S. Kanegawa, S. Kang, O. Sato, Y. Shiota, K. Yoshizawa, S. Hayami, S. Wu, C. He, C.-Y. Duan
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 51 Issue: 18 Pages: 4367-4370

    • DOI

      10.1002/anie.201201305

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substituent Effects in Thermal Reactions of a Silene with Silyl-Substituted Alkynes: A Theoretical Study2012

    • Author(s)
      H. Tanaka, Y. Shiota, K. Hori, A. Naka, M. Ishikawa, K. Yoshizawa
    • Journal Title

      Organometallics

      Volume: 31 Issue: 13 Pages: 4737-4747

    • DOI

      10.1021/om300310g

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical study of oxidation of cyclohexane diol to adipic anhydride by [Ru(IV)(O)(tpa)(H_<2>O)]^<2+> complex (tpa = tris(2-pyridylmethyl)amine)2011

    • Author(s)
      Y. Shiota,J. M. Herrera, G. Juhasz, T. Abe, S. Ohzu, T. Ishizuka, T. Kojima, K. Yoshizawa
    • Journal Title

      Inorg. Chem

      Volume: 50 Pages: 6200-6209

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of Oxidation of Cyclohexane Diol to Adipic Anhydride by [RuIV(O)(tpa)(H2O)]2+Complex (tpa=Tris(2-pyridylmethyl)amine)2011

    • Author(s)
      Y.Shiota, J.M.Herrera,G.Juhasz, T.Abe, S.Ohzu, T.Ishizuka, T.Kojima, K.Yoshizawa
    • Journal Title

      Inorganic Chemistry

      Volume: 50 Issue: 13 Pages: 6200-6209

    • DOI

      10.1021/ic200481n

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical study on the formation of silacyclopropene from acylsilane and acetylene via silene-to-silylene rearrangement2011

    • Author(s)
      Tanaka, H, Kondo, Y, Shiota, Y Naka, A, Ishikawa, M, Yoshizawa, K
    • Journal Title

      Organometallics

      Volume: 30 Issue: 11 Pages: 3160-3167

    • DOI

      10.1021/om2002393

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proton-Coupled Electron Shuttling in a Covalently Linked Ruthenium-Copper Heterodinuclear Complex2011

    • Author(s)
      Tomoya Ishizuka, Kengo Tobita, Yuichi Yano, Yoshihito Shiota, Kazunari Yoshizawa, Shunichi Fukuzumi, Takahiko Kojima
    • Journal Title

      Journal of the American Chemical Society

      Volume: 133 Issue: 46 Pages: 18570-18573

    • DOI

      10.1021/ja208141b

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic Insights into Photochromic Behavior of a Ruthenium(II)-Pterin Complex2011

    • Author(s)
      Tomoya Ishizuka, Takuya Sawaki, Soushi Miyazaki, Masaki Kawano, Yoshihito Shiota, Kazunari Yoshizawa, Shunichi Fukuzumi, Takahiko Kojima
    • Journal Title

      Chemistry-A European Journal

      Volume: 17 Issue: 24 Pages: 6652-6662

    • DOI

      10.1002/chem.201003522

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] D. Sato, Y. Shiota, G. Juhasz, K. Yoshizawa2010

    • Author(s)
      Theoretical study of the mechanism of valence tautomerism in cobalt complexes
    • Journal Title

      J. Phys. Chem.A

      Volume: 114 Pages: 12928-12935

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical study of thermal spin transition between the singlet state and the quintet state in the [Fe(2-picolylamine)_<3>]^<2+> spin crossover system2010

    • Author(s)
      Y. Shiota,D. Sato, G. Juhasz, K. Yoshizawa
    • Journal Title

      J. Phys. Chem. A

      Volume: 114 Pages: 5862-5869

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of Thermal Spin Transition between the Singlet State and the Quintet State in the [Fe(2-pic)_3]^<2+> Spin Crossover System (2-pic : 2-picolylamine)2010

    • Author(s)
      Y.Shiota, D.Sato, G.Juhasz, K.Yoshizawa
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 114 Pages: 5862-5877

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of the Mechanism of Valence Tautomerism in Cobalt Complexes2010

    • Author(s)
      D.Sato, Y.Shiota, G.Juhasz, K.Yoshizawa
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 114 Pages: 12928-12935

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Low-Spin Ruthenium(IV)-Oxo Complex : Does the Spin State Have Impact on the Reactivity?2010

    • Author(s)
      T.Kojima, Y.Hirai, Y.Shiota, K.Yoshizawa, K.Ikemura, T.Ogura, S.Fukuzumi
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 49 Pages: 8449-8453

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Low-Spin Ruthenium(IV)-Oxo Complex : Does the Spin State Have Impact on the Reactivity?2010

    • Author(s)
      T.Kojima, N.Hirasa, D.Noguchi, S.Miyazaki, Y.Shiota, K.Yoshizawa, S.Fukuzumi
    • Journal Title

      Inorganic Chemistry

      Volume: 49 Pages: 3737-3745

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of Thermal Spin Transition between the Singlet State and the Quintet State in the [Fe (2-pic)_3]^<2+> Spin Crossover System (2-pic : 2-picolylamine)2010

    • Author(s)
      Y.Shiota, et al.
    • Journal Title

      Journal of Physical Chemistry A 114(In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of the reactivity of bis(u-oxo)Cu^II Cu^III and Cu^III Cu^III species to methane2009

    • Author(s)
      Y. Shiota, K. Yoshizawa
    • Journal Title

      Inorg. Chem

      Volume: 48 Pages: 838-845

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of the Reactivity of Bis(μ-oxo)Cu^<II>Cu^<II> and Cu^<III>Cu^<III> Species to Methane2009

    • Author(s)
      Y.Shiota, et al.
    • Journal Title

      Inorganic Chemistry 48

      Pages: 838-845

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DFT Study on N_2 Activation by a Hydride-Bridged Diniobium Complex. N≡N Bond Cleavage Accompanied by H_2 Evolution2009

    • Author(s)
      H.Tanaka, et al.
    • Journal Title

      Inorganic Chemistry 48

      Pages: 3875-3881

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metal-Ligand Cooperation in H_2 Production and H_2O Decomposition on a Ru (II) PNN Complex : the Role of Ligand Dearomatization-Aromatization2009

    • Author(s)
      J.Li, et al.
    • Journal Title

      Journal of the American Chemical Society 131

      Pages: 13584-13585

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nickel (II), Palladium (II), and Platinum (II) η^3-Allyl Complexes Bearing a Bidentate Titanium (IV) Phosphinoamide Ligand : A Ti-M_2 Dative Bond Enhances the Electrophilicity of the π-Allyl Moiety2009

    • Author(s)
      H.Tsutsumi, et al.
    • Journal Title

      Organometallics 28

      Pages: 1988-1991

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 銅二核オキソ種によるメタン活性化の理論的研究2013

    • Author(s)
      塩田淑仁
    • Organizer
      日本化学会春季年会
    • Place of Presentation
      立命館大学 びわこキャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] Theoretical study of the methane hydroxylation by pMMO2012

    • Author(s)
      Yoshihito Shiota, Gergely Juhasz, and Kazunari Yoshizawa
    • Organizer
      P450 シンポ
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-02
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核活性点におけるメタン活性化の理論的研究2012

    • Author(s)
      塩田 淑仁、ゲルゲイ ユハース、吉澤 一成
    • Organizer
      触媒討論会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-25
    • Related Report
      2012 Final Research Report
  • [Presentation] Co 錯体の原子価互変異性に関する理論的研究2012

    • Author(s)
      塩田淑仁 佐藤大介 ゲルゲイ ユハース 吉澤一成
    • Organizer
      錯体討論会
    • Place of Presentation
      富山
    • Year and Date
      2012-09-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核活性点におけるメタン酸化反応に関する理論的研究2012

    • Author(s)
      塩田 淑仁、ゲルゲイ ユハース、吉澤 一成
    • Organizer
      春季年会
    • Year and Date
      2012-03-27
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核活性点におけるメタン酸化反応に関する理論的研究2012

    • Author(s)
      塩田淑仁, 吉澤一成
    • Organizer
      日本化学会春季年会
    • Place of Presentation
      神奈川大学
    • Year and Date
      2012-03-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Co 錯体の原子価互変異性に関する理論的研究2012

    • Author(s)
      塩田淑仁
    • Organizer
      錯体討論会
    • Place of Presentation
      富山大学 五福キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 銅二核活性点におけるメタン活性化の理論的研究  -チロシン残基の役割について-2012

    • Author(s)
      塩田淑仁
    • Organizer
      触媒討論会
    • Place of Presentation
      九州大学 伊都キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 金属錯体のスピン交差に関する理論的研究-電子状態と反応性-2011

    • Author(s)
      塩田淑仁
    • Organizer
      第2回統合物質シンポジウム
    • Place of Presentation
      名古屋大学(招待講演)
    • Year and Date
      2011-11-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] 銅二核活性点におけるメタン酸化反応に関する理論的研究2011

    • Author(s)
      塩田淑仁, 吉澤一成
    • Organizer
      酸化反応討論会
    • Place of Presentation
      大阪大学
    • Year and Date
      2011-11-04
    • Related Report
      2011 Annual Research Report
  • [Presentation] 銅二核活性点におけるメタン酸化反応に関する理論的研究2011

    • Author(s)
      塩田 淑仁、ゲルゲイ ユハース、吉澤 一成
    • Organizer
      酸化反応討論会
    • Place of Presentation
      大阪
    • Year and Date
      2011-11-03
    • Related Report
      2012 Final Research Report
  • [Presentation] Theoretical Study of Spin Transition between the Singlet State and the Quintet State in the [Fe(2-pic)3]2+ Spin Crossover System (2-pic:2-picolylamine)2011

    • Author(s)
      塩田淑仁 佐藤大介 ゲルゲイ ユハース 吉澤一成
    • Organizer
      第60回記念錯体化学 OSAKA 国際会議
    • Place of Presentation
      大阪
    • Year and Date
      2011-09-28
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核錯体上での酸素活性化に関するチロシン残基の役割に関する理論的研究2011

    • Author(s)
      塩田淑仁 ゲルゲイ ユハース 吉澤一成
    • Organizer
      第108回触媒討論会
    • Place of Presentation
      北見
    • Year and Date
      2011-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核錯体上での酸素活性化に関するチロシン残基の役割に関する理論的研究2011

    • Author(s)
      塩田淑仁, 吉澤一成
    • Organizer
      触媒討論会
    • Place of Presentation
      北見工業大学
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] Theoretical Study of the Mechanism of Valence Tautomerism in Cobalt Complexes2011

    • Author(s)
      塩田淑仁, 吉澤一成
    • Organizer
      第7回化学物理国際会議
    • Place of Presentation
      早稲田大学
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 金属酵素による酸素活性化機構に関する理論的研究2011

    • Author(s)
      塩田 淑仁,堀 一則,吉澤 一成,堀 一則
    • Organizer
      分子科学討論会
    • Place of Presentation
      大阪
    • Year and Date
      2011-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Theoretical Study of the Mechanism of Valence Tautomerism in Cobalt Complexes2011

    • Author(s)
      Yoshihito Shiota, Daisuke Sato, Gergely Juhasz, and Kazunari Yoshizawa
    • Organizer
      第7回物理化学国際会議
    • Place of Presentation
      東京
    • Year and Date
      2011-09-03
    • Related Report
      2012 Final Research Report
  • [Presentation] 金属錯体のスピン交差に関する理論的研究2011

    • Author(s)
      塩田淑仁 佐藤大介 ゲルゲイ ユハース 吉澤一成
    • Organizer
      理論化学討論会
    • Place of Presentation
      札幌
    • Year and Date
      2011-05-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 高原子価金属オキソ種の電子状態とその反応性に関する量子化学計算2011

    • Author(s)
      塩田淑仁
    • Organizer
      計算化学談話会
    • Place of Presentation
      福岡
    • Year and Date
      2011-01-05
    • Related Report
      2012 Final Research Report
  • [Presentation] 二核銅活性点を有するメタン酸化酵素のQM/MM計算2010

    • Author(s)
      塩田淑仁、堀一則、吉澤一成
    • Organizer
      日本化学会第90春期年会(2010)
    • Place of Presentation
      近畿大学 本部キャンパス
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] 二核銅活性点を有するメタン酸化酵素の QM/MM 計算2010

    • Author(s)
      塩田淑仁 堀一則 吉澤一成
    • Organizer
      日本化学会春季年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-03-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 銅二核活性点をもつ酵素の触媒機構に関する理論的研究2009

    • Author(s)
      塩田淑仁 吉澤一成
    • Organizer
      理論化学討論会
    • Place of Presentation
      東京
    • Year and Date
      2009-05-28
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜結合型メタンモノオキシゲナーゼの銅活性点に関する理論的研究2009

    • Author(s)
      塩田淑仁 堀一則 吉澤一成
    • Organizer
      分子科学会
    • Place of Presentation
      名古屋
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://trout.scc.kyushu-u.ac.jp/yoshizawaJ/shiota.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 九州大学先導物質化学研究所吉澤研究室

    • URL

      http://trout.scc.kyushu-u.ac.jp/yoshizawaJ/pagesJ/publicationsJ.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://trout.scc.kyushu-u.ac.jp/yoshizawaJ/pagesJ/publicationsJ.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2019-07-29  

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