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Structure-based design of a bioactive small molecule

Research Project

Project/Area Number 21870016
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

SATO Shinichi  Kyoto University, 物質ー細胞統合システム拠点, 助教 (70534478)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,704,000 (Direct Cost: ¥2,080,000、Indirect Cost: ¥624,000)
Fiscal Year 2010: ¥1,287,000 (Direct Cost: ¥990,000、Indirect Cost: ¥297,000)
Fiscal Year 2009: ¥1,417,000 (Direct Cost: ¥1,090,000、Indirect Cost: ¥327,000)
KeywordsX線結晶解析 / 標的タンパク質同定 / 生理活性化合物 / 分子設計 / 分子認識
Research Abstract

The goal of this project is to solve the X-ray structure of wrenchnolol-target-protein complex and to obtain a wrenchnolol analogue which has a good potency by structure-based design.
: Research results :
1. Three kinds of S100 protein (S100A11, A13 and A16), which are purified as protein targets of wrenchnolol, were prepared by using E. coli expression system.
2. 1g of wrenchnolol was prepared by chemical synthesis.
3. The S100 protein-wrenchnolol complex was formed by mixing and incubating on ice for 30min, and then concentrated by ultrafiltration.
4. The initial crystallization conditions for the complex were screened by using crystal screening kits. In this screening, several protein crystals were obtained.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (23 results)

All 2011 2010 2009

All Journal Article (11 results) (of which Peer Reviewed: 8 results) Presentation (7 results) Book (5 results)

  • [Journal Article] Small-molecule fluorescent probes for specific RNA targets Chem.2011

    • Author(s)
      Murata, A., Sato, S., Kawazoe, Y., Uesugi M.
    • Journal Title

      Comm. 47(16)

      Pages: 4712-4714

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Marine Natural Product Aurilide Activates the OPA1-Mediated Apoptosis by Binding to Prohibitin Chem.2011

    • Author(s)
      Sato, S., Murata, A., Orihara, T.,Shirakawa, T., Suenaga, K., Kigoshi, H., Uesugi, M.
    • Journal Title

      Biol. 18(1)

      Pages: 131-139

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Deactivation of STAT6 through serine 707 phosphorylation by JNK2011

    • Author(s)
      Shirakawa, T., Kawazoe, Y., Tsujikawa, T., Jung, D., Sato, S., Uesugi M.
    • Journal Title

      J.Biol.Chem. 286(5)

      Pages: 4003-4010

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Small-molecule fluorescent probes for specific RNA targets2011

    • Author(s)
      Murata, A., Sato, S., Kawazoe, Y., Uesugi M.
    • Journal Title

      Chemical Communications

      Volume: 47 Pages: 4712-4714

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Marine Natural Product Aurilide Activates the OPA1-Mediated Apoptosis by Binding to Prohibitin2011

    • Author(s)
      Sato, S., Murata, A., Orihara, T., Shirakawa, T., Suenaga, K., Kigoshi, H., Uesugi, M.
    • Journal Title

      Chemistry & Biology

      Volume: 18 Pages: 131-139

    • NAID

      120002807468

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deactivation of STAT6 through serine 707 phosphorylation by JNK2011

    • Author(s)
      Shirakawa, T., Kawazoe, Y., Tsujikawa, T., Jung, D., Sato, S., Uesugi M.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 286 Pages: 4003-4010

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical target isolation for novices : affinity-based strategies Chem.2010

    • Author(s)
      Sato, S., Murata, A., Shirakawa, T.,Uesugi, M.
    • Journal Title

      Biol. 17(6)

      Pages: 616-623

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical target isolation for novices : affinity-based strategies2010

    • Author(s)
      Sato, S., Murata, A., Shirakawa, T., Uesugi, M.
    • Journal Title

      Chemistry & Biology

      Volume: 17 Pages: 616-623

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 化合物推理ゲーム2010

    • Author(s)
      Sato, S., Uesugi, M.
    • Journal Title

      ファルマシア 46(1)

      Pages: 83-86

    • Related Report
      2009 Annual Research Report
  • [Journal Article] 海洋天然物のケミカルジェネティクス2009

    • Author(s)
      Sato, S., Murata, A., Uesugi, M.
    • Journal Title

      細胞工学 28(4)

      Pages: 332-337

    • Related Report
      2009 Annual Research Report
  • [Journal Article] 化合物推理ゲーム2009

    • Author(s)
      Sato, S., Uesugi, M.
    • Journal Title

      ファルマシア 45(12)

      Pages: 1263-1266

    • Related Report
      2009 Annual Research Report
  • [Presentation] Marine Natural Product Aurilide Activates the OPA1-Mediated Apoptosis by Binding to Prohibitin.2010

    • Author(s)
      Sato, S., Murata, A., Orihara, T.,Suenaga, K., Kigoshi, H., Uesugi, M.
    • Organizer
      The 8th iCeMS International Symposium : “Meso-Control of Functional Architecture"
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2010-11-09
    • Related Report
      2010 Final Research Report
  • [Presentation] Natural Product Aurilide Activates the OPA1-Mediated Apoptosis by Binding to Prohibitin.2010

    • Author(s)
      Sato, S., Murata, A., Orihara, T., Suenaga, K., Kigoshi, H., Uesugi, M.
    • Organizer
      The 8th iCeMS International Symposium
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2010-11-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Protein Target Identification of Bioactive Small Molecules.2010

    • Author(s)
      Sato S.
    • Organizer
      Department of Chemistry Seminar
    • Place of Presentation
      Athens, Georgia, USA, University of Georgia (招待講演)
    • Year and Date
      2010-10-06
    • Related Report
      2010 Final Research Report
  • [Presentation] Protein Target Identification of Bioactive Small Molecules.2010

    • Author(s)
      Sato, S.
    • Organizer
      University of Georgia, Department of Chemistry Seminar
    • Place of Presentation
      Athens, Georgia, USA
    • Year and Date
      2010-10-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] Small molecule-based FRET probes for specific RNA targets.2010

    • Author(s)
      Murata, A., Sato, S., Kawazoe, Y., Uesugi M.
    • Organizer
      The 5th Japan-Korea Chemical Biology Symposium
    • Place of Presentation
      Busan, Korea
    • Year and Date
      2010-01-26
    • Related Report
      2010 Final Research Report
  • [Presentation] Marine Natural Product Aurilide Activates the OPA1-Mediated Apoptosis by Binding to Prohibitin.2009

    • Author(s)
      Sato, S., Murata, A., Orihara, T., Suenaga, K., Kigoshi, H., Uesugi, M.
    • Organizer
      The 25th Naito Conference on Chemical Biology [II]
    • Place of Presentation
      Sapporo, Japan
    • Year and Date
      2009-09-10
    • Related Report
      2010 Final Research Report
  • [Presentation] The Marine Natural Product, Aurilide, Activates OPAl-mediated Apoptosis by Targeting Prohibitin2009

    • Author(s)
      佐藤慎一
    • Organizer
      第25回内藤コンファレンス
    • Place of Presentation
      北海道・札幌
    • Year and Date
      2009-09-10
    • Related Report
      2009 Annual Research Report
  • [Book] 生理活性物質による創薬標的同定のコツ(創薬研究のためのタンパク質・プロテオミクス解析) 別冊2010

    • Author(s)
      佐藤慎一, 村田亜沙子, 白川貴詩, 上杉志成
    • Publisher
      羊土社出版
    • Related Report
      2010 Final Research Report
  • [Book] ファルマシア(化合物推理ゲーム) 46(1)2010

    • Author(s)
      佐藤慎一, 上杉志成
    • Related Report
      2010 Final Research Report
  • [Book] 生理活性物質による創薬標的同定のコツ2010

    • Author(s)
      佐藤慎一, 村田亜沙子, 白川貴詩, 上杉志成
    • Total Pages
      5
    • Publisher
      創薬研究のためのタンパク質・プロテオミクス解析
    • Related Report
      2010 Annual Research Report
  • [Book] 細胞工学(海洋天然物のケミカルジェネティクス) 282009

    • Author(s)
      佐藤慎一, 村田亜沙子, 上杉志成
    • Publisher
      学研メディカル秀潤社出版
    • Related Report
      2010 Final Research Report
  • [Book] ファルマシア(化合物推理ゲーム) 45(12)2009

    • Author(s)
      佐藤慎一,上杉志成
    • Related Report
      2010 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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