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Identification and biochemical characterization of RNA ligasesin archaea

Research Project

Project/Area Number 22370066
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKeio University

Principal Investigator

KANAI Akio  慶應義塾大学, 環境情報学部, 教授 (60260329)

Research Collaborator 慶應義塾大学, 大学院, 学生
慶應義塾大学, 先端生命科学研究所, 技術員
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥14,430,000 (Direct Cost: ¥11,100,000、Indirect Cost: ¥3,330,000)
Fiscal Year 2012: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2011: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2010: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
KeywordsRNA連結 / RNAリガーゼ / 超好熱性アーキア / 再構成系 / tRNA / アーキア / 生化学 / 分子生物学 / プロテアーゼ / トランスポゾン / 複合体 / Pyrococcus furiosus / RNA ligase / RNAプロセシング / イントロン / tRNA前駆体 / 組換え体酵素
Research Abstract

RNA ligase is an enzyme that can catalyze the ligation of RNA molecules throughphosphodiester bond. We cloned three RNA ligase genes from a hyperthermophilic archaeon,P. furiosus and characterized the recombinant proteins. The three enzymes are: (1) aputa

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report

Research Products

(52 results)

All 2013 2012 2011 2010

All Journal Article (11 results) (of which Peer Reviewed: 9 results) Presentation (37 results) (of which Invited: 4 results) Book (4 results)

  • [Journal Article] Alternative genetic code for aminoacids and transfer RNA revisited2013

    • Author(s)
      Hamashima, K. and Kanai, A
    • Journal Title

      BioMolecular Concepts

      Volume: (in press)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Alternative genetic code for amino acids and transfer RNA revisited2013

    • Author(s)
      Hamashima, K.
    • Journal Title

      BioMolecular Concepts

      Volume: 未定

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic heterogeneity in a naturalarchaeal population suggests a modelof tRNA gene disruption2012

    • Author(s)
      Sugahara, J., Fujishima, K., Nunoura,T., Takaki, Y., Takami, H., Takai, K.,Tomita, M. and Kanai, A
    • Journal Title

      PLoS ONE

      Volume: 7(3)

    • DOI

      10.1371/journal.pone.0032504

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Metatranscriptomic analysis ofmicrobes in an ocean-front deepsubsurface hot spring reveals novelsmall RNAs and type-specific tRNAdegradation.2012

    • Author(s)
      Murakami, S., Fujishima, K., Tomita,M. and Kanai, A
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 78(4) Pages: 1015-1022

    • DOI

      10.1128/aem.06811-11

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nematode-specific tRNAsthat decode an alternative geneticcode for leucine.2012

    • Author(s)
      Hamashima, K., Fujishima, K., Masuda,T., Sugahara, J., Tomita, M. and Kanai,A.
    • Journal Title

      Nucleic Acids Research

      Volume: 40(8) Pages: 3653-3662

    • DOI

      10.1093/nar/gkr1226

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novelthree-unit tRNA splicingendonuclease found in ultrasmallarchaea possesses broad substratespecificity.2011

    • Author(s)
      Fujishima, K., Sugahara, J., Miller,CS., Baker BJ., Di Giulio, M., Takesue,K., Sato, A., Tomita, M., Banfield, JF.and Kanai, A.
    • Journal Title

      Nucleic Acids Research

      Volume: 39(22) Pages: 9695-9704

    • DOI

      10.1093/nar/gkr692

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GTP-dependent RNA 3'-terminalphosphate cyclase from thehyperthermophilic archaeonPyrococcus furiosus.2011

    • Author(s)
      Sato, A., Soga, T., Igarashi, K.,Takesue, K., Tomita, M. and Kanai, A
    • Journal Title

      Genes to Cells

      Volume: 16 Pages: 1190-1199

    • DOI

      10.1111/j.1365-2443.2011.01561.x

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Insights into the evolution ofarchaea and eukaryotic proteinmodifier systems reveled by thegenome of a novel archaeal group2011

    • Author(s)
      Nunoura, T., Takaki, Y., Kakuta, J.,Nishi, S., Sugahara, J., Kazama, H.,Chee, G.-J., Hattori, M., Kanai, A.,Atomi, H., Takai, K. and Takami, H.
    • Journal Title

      Nucleic Acids Research

      Volume: 39 (8) Pages: 3204-3223

    • DOI

      10.1093/nar/gkq1228

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Insights into the evolution of archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.2011

    • Author(s)
      布浦拓郎, 他
    • Journal Title

      Nucleic Acids Research

      Volume: (掲載確定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tri-split tRNA: 超好酸好熱性アーキアから発見された3つの遺伝子に分断されたtRNA2010

    • Author(s)
      藤島皓介、菅原潤一、金井昭夫
    • Journal Title

      生化学

      Volume: Vol.82, No.7 Pages: 606-612

    • URL

      http://www.jbsoc.or.jp/event/magazine/pdf/82-07-04.pdf

    • Related Report
      2012 Final Research Report
  • [Journal Article] Tri-split tRNA:超好酸好熱性アーキアから発見された三つの遺伝子に分断されたtRNA2010

    • Author(s)
      藤島皓介, 他
    • Journal Title

      生化学

      Volume: 82 Pages: 606-612

    • Related Report
      2010 Annual Research Report
  • [Presentation] アーキアにおけるtRNA遺伝子の多様性と進化シンポジウム4SY21 アーキア研究から見える遺伝情報伝達系の保存性と多様性2013

    • Author(s)
      金井昭夫
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Final Research Report
  • [Presentation] アーキアにおけるtRNA遺伝子の多様性と進化2013

    • Author(s)
      金井昭夫
    • Organizer
      日本農芸化学会 シンポジウム
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 超好熱性アーキアPyrococcus furiosusにおける3タイプのRNAリガーゼと試験管内tRNA断片連結再構成系の構築2012

    • Author(s)
      佐藤朝子、増田豪、冨田勝、伊藤隆、金井昭夫
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] アーキアの進化的位置づけとtRNA遺伝子の分子進化 ワークショップ6 生物進化への新しいアプローチ2012

    • Author(s)
      金井昭夫
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] Molecular evolution of disruptedtransfer RNA genes and their intronsin Archaea.2012

    • Author(s)
      A. Kanai
    • Organizer
      16th Evolutionary BiologyMeeting at Marseilles
    • Place of Presentation
      France
    • Related Report
      2012 Final Research Report
  • [Presentation] 真核生物の変則tRNA遺伝子群2012

    • Author(s)
      金井昭夫
    • Organizer
      第14回日本進化学会大会ワークショップWS10「遺伝暗号マジック20の起源と進化」
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] A novel three-unit tRNAsplicing endonuclease found in anultrasmall Archaea. RNA20122012

    • Author(s)
      K. Fujishima, J. Sugahara, C. S.Miller, B. J. Baker, M. Di Giulio, K.Takesue, A. Sato, M. Tomita, J. F.Banfield and A. Kanai
    • Organizer
      The 17thAnnual Meeting of the RNA Society
    • Place of Presentation
      Michigan, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Characterization of small RNAs byusing a ribosome-enriched fraction inEscherichia coli. RNA20122012

    • Author(s)
      S. Murakami, Y. Ikeda, E. Noro, M.Tomita, K. Nakahigashi and A. Kanai
    • Organizer
      The 17thAnnual Meeting of the RNA Society
    • Place of Presentation
      Michigan, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Biochemical Characterization ofThree RNA Ligases from theHyperthermophilic ArchaeonPyrococcus furiosus. RNA20122012

    • Author(s)
      A. Sato, T. Masuda, M. Tomita, T. Itohand A. Kanai
    • Organizer
      The17th Annual Meeting of the RNA Society
    • Place of Presentation
      Michigan, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Molecular evolution of disrupted transfer RNA genes and their introns in Archaea2012

    • Author(s)
      Kanai, A.
    • Organizer
      16th Evolutionary Biology Meeting at Marseilles
    • Place of Presentation
      France
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 真核生物の変則tRNA遺伝子群2012

    • Author(s)
      金井昭夫
    • Organizer
      第14回日本進化学会大会 ワークショップ
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] アーキアの進化的位置づけとtRNA遺伝子の分子進化2012

    • Author(s)
      金井昭夫
    • Organizer
      第35回日本分子生物学会年会 ワークショップ
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Evolution of disrupted transfer RNA genes and their introns in Archaea2011

    • Author(s)
      Kanai, A.
    • Organizer
      第34回日本分子生物学会年会シンポジウム「A new frontier of computational analysis of functional RNAs」
    • Place of Presentation
      Yokohama, Japan(招待講演)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Systematic analysis of non-coding RNAs and their regulatory proteins2011

    • Author(s)
      Kanai, A.
    • Organizer
      Multilevel Systems Biology : Genomes, Structures, and Networks大阪大学蛋白質研究所およびiFReC(免疫学フロンティア研究センター)合同セミナー
    • Place of Presentation
      Osaka, Japan(招待講演)
    • Year and Date
      2011-11-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] 超好熱性アーキアPyrococcus furiosusにおける3種のRNA ligaseの性状解析2011

    • Author(s)
      金井昭夫
    • Organizer
      第84回日本生化学会大会シンポジウム3S4a「アーキア研究の最前線」
    • Place of Presentation
      京都(招待講演)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 機能性RNAとその制御タンパク質から考える生命科学2011

    • Author(s)
      金井昭夫
    • Organizer
      富山大学 第72回生命科学先端研究センター学術セミナー
    • Place of Presentation
      富山
    • Year and Date
      2011-08-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Evolution of disrupted transfer RNAgenes and their introns in Archaea2011

    • Author(s)
      A. Kanai
    • Organizer
      第34回日本分子生物学会年会 シンポジウム
    • Place of Presentation
      横浜
    • Related Report
      2012 Final Research Report
  • [Presentation] Evolution of disrupted transfer RNAgenes and their introns in Archaea2011

    • Author(s)
      A. Kanai
    • Organizer
      第34回日本分子生物学会年会 シンポジウム「A new frontier ofcomputational analysis of functionalRNAs
    • Place of Presentation
      横浜
    • Related Report
      2012 Final Research Report
  • [Presentation] Systematic analysis of non-codingRNAs and their regulatory proteins.2011

    • Author(s)
      A. Kanai
    • Organizer
      大阪大学蛋白質研究所およびiFReC(免疫学フロンティア研究センター)合同セミナー (Multilevel Systems Biology:Genomes, Structures, and Networks)
    • Place of Presentation
      大阪
    • Related Report
      2012 Final Research Report
  • [Presentation] 超好熱性アーキアPyrococcus furiosusにおける3種のRNA ligaseの性状解析 第84回日本生化学会大会2011

    • Author(s)
      金井昭夫、竹末可奈子、佐藤朝子、増田豪、冨田勝
    • Organizer
      第84回日本生化学会大会 シンポジウム3S4a「アーキア研究の最前線」
    • Place of Presentation
      京都
    • Related Report
      2012 Final Research Report
  • [Presentation] RNA鎖の末端構造とRNA 連結の酵素について2011

    • Author(s)
      金井昭夫
    • Organizer
      第10回新しいRNA/RNPを見つける会
    • Place of Presentation
      沖縄
    • Related Report
      2012 Final Research Report
  • [Presentation] 超好熱性アーキアPyrococcusfuriosus 由来 RNA 3`-terminalphosphate cyclaseは GTP依存にリン酸基の環状化を触媒する2011

    • Author(s)
      佐藤朝子、曽我朋義、五十嵐香織、竹末可奈子、冨田勝、金井昭夫
    • Organizer
      日本Archaea研究会 第24回公演会
    • Place of Presentation
      鶴岡
    • Related Report
      2012 Final Research Report
  • [Presentation] Metatranscriptomic analysis ofmicrobial communities in Yunohama Hotspring reveals type-specific tRNAdegradation and novel small RNAs2011

    • Author(s)
      S. Murakami, K. Fujishima, M. Tomita,and A. Kanai
    • Organizer
      RNA2011
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Pre-tRNAプロセシングとsiRNAの制御を結ぶ酵素の解析2010

    • Author(s)
      金井昭夫
    • Organizer
      BMB2010第33回日本分子生物学会年会、第83回日本生化学会大会合同大会ワークショップ
    • Place of Presentation
      ポートピアホテル(神戸)
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] RNAのバイオインフォマティックス:構造機能と分子進化2010

    • Author(s)
      金井昭夫
    • Organizer
      第20回感染研シンポジウム
    • Place of Presentation
      国立感染症研究所(東京都)(招待講演)
    • Year and Date
      2010-05-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] 超好熱性アーキアにおける大規模なtRNAイントロン転移現象の進化的考察2010

    • Author(s)
      藤島皓介、菅原潤一、冨田勝、金井昭夫
    • Organizer
      第33回日本分子生物学会年会、第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] メタゲノム情報に基づくアーキアtRNA遺伝子における分断化過程の解析2010

    • Author(s)
      菅原潤一、藤島皓介、布浦拓郎、高木善弘、高見英人、高井研、冨田勝、金井昭夫
    • Organizer
      第33回日本分子生物学会年会、第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] Stepwise processing of pre-tRNAcontaining three introns in ahyperthermophilic archaeonThermofilum pendens2010

    • Author(s)
      喜久田薫、菅原潤一、藤島皓介、冨田勝、金井昭夫
    • Organizer
      BMB2010 第33回日本分子生物学会年会、第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] Pre-tRNAプロセシングとsiRNAの制御を結ぶ酵素の解析 ワークショップ「機能性RNAとその制御タンパク質から考える生命科学」2010

    • Author(s)
      金井昭夫
    • Organizer
      BMB2010 第33回日本分子生物学会年会、第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] Large-scale intron transposition hascontributed to the late gain ofintrons in the deep-branching Archaea.2010

    • Author(s)
      K. Fujishima, J. Sugahara, M. Tomitaand A. Kanai
    • Organizer
      The 4th Asian Young ResearchersConference on Computational and OmicsBiology
    • Place of Presentation
      Singapore
    • Related Report
      2012 Final Research Report
  • [Presentation] 情報科学と実験科学の手法に基づく機能性RNA研究2010

    • Author(s)
      金井昭夫
    • Organizer
      第58回日本ウイルス学会学術集会 イブニングシンポジウム「ゲノミクス、情報科学、計算科学とウイルス学」
    • Place of Presentation
      徳島
    • Related Report
      2012 Final Research Report
  • [Presentation] アーキアゲノムにおけるtRNAの多様性と進化2010

    • Author(s)
      藤島皓介、菅原潤一、冨田勝、金井昭夫
    • Organizer
      日本進化学会 第12回東京大会 ワークショップWS6 ゲノムから見る微生物進化
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] アーキア由来核酸関連酵素におけるRNAとDNAの曖昧な認識について2010

    • Author(s)
      金井昭夫、佐藤朝子、冨田勝
    • Organizer
      日本進化学会 第12回東京大会
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] 超好熱性アーキアPyrococcus furiosus のPre-tRNAプロセシングに関わる酵素群の解析2010

    • Author(s)
      金井昭夫
    • Organizer
      第23回日本Archaea研究会講演会
    • Place of Presentation
      名古屋
    • Related Report
      2012 Final Research Report
  • [Presentation] Biochemicalcharacterization of a GTP-dependentRNA 3`-terminal phosphate cyclasefrom a hyperthermophilic archaeonPyrococcus furiosus.2010

    • Author(s)
      A. Sato, M. Tomita and A. Kanai
    • Organizer
      RNA2010
    • Place of Presentation
      Seattle, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Large-scale transposition of tRNAintrons in the archaeal orderThermoproteales2010

    • Author(s)
      K. Fujishima, J. Sugahara, M. Tomitaand A. Kanai
    • Organizer
      RNA2010
    • Place of Presentation
      Seattle, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] TheOrigin and Evolution of DisruptedtRNA Genes in Archaea2010

    • Author(s)
      K. Fujishima, J. Sugahara, M. Tomitaand A. Kanai
    • Organizer
      Asian Young Researchers Conference on Computational and Omics Biology 2010
    • Place of Presentation
      Taiwan
    • Related Report
      2012 Final Research Report
  • [Book] Evolutionary Biology: Exobiologyand Evolutionary Mechanism2013

    • Author(s)
      Kanai, A.
    • Publisher
      Springer-Verlag Berlin Heidelberg,German
    • Related Report
      2012 Final Research Report
  • [Book] Evolutionary Biology2013

    • Author(s)
      Kanai, A.
    • Publisher
      Springer
    • Related Report
      2012 Annual Research Report
  • [Book] Archaea: Structure, Habitats andEcological Significanc2011

    • Author(s)
      Springer-Verlag Berlin Heidelberg,German
    • Publisher
      NovaScience Publishers, Inc. New York
    • Related Report
      2012 Final Research Report
  • [Book] Diversity, function and processing of archaeal non-coding RNAs. in "Archaea : Structure, Habitats and Ecological Significance"2011

    • Author(s)
      藤島皓介, 他
    • Publisher
      Nova Science Publishers, Inc.New York
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-22   Modified: 2019-07-29  

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