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Molecular dissection of the organization and dynamics of lipid domains in biomembranes

Research Project

Project/Area Number 22390018
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

KOBAYASHI Toshihide  独立行政法人理化学研究所, 小林脂質生物学研究室, 主任研究員 (60162004)

Co-Investigator(Kenkyū-buntansha) ISHITSUKA Reiko  独立行政法人理化学研究所, 小林脂質生物学研究室, 専任研究員 (60342747)
ABE Mitsuhiro  独立行政法人理化学研究所, 小林脂質生物学研究室, 研究員 (90415068)
MURATE Motohide  独立行政法人理化学研究所, 小林脂質生物学研究室, 研究員 (30311369)
MAKINO Asami  独立行政法人理化学研究所, 小林脂質生物学研究室, 特別研究員 (20373368)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2012: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2010: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Keywords脂質ドメイン / 脂質プローブ / 脂質ラフト / 脂質の非対称性 / スフィンゴミエリン / コレステロール / 脂質の可視化 / ホスファチジルイノシトール4,5-ビスリン酸 / 細胞分裂 / 超高解像顕微鏡 / スフィンゴ脂質 / 免疫電子顕微鏡 / X線散乱
Research Abstract

We established a method to visualize major components of lipid rafts, sphingomyelin and cholesterol, in sub-micron scale.
New screening protocol using lipid imaging was employed to isolate a new inhibitor of sphingomyelin biosynthesis.
The role of sphingomyelin to regulate the transbilayer movement of lipid second messengers such as ceramide and diacylglycerol was elucidated.
The unusual stereoconfiguration of endosome-specific lipid was determined.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (47 results)

All 2013 2012 2011 2010 Other

All Journal Article (25 results) (of which Peer Reviewed: 25 results) Presentation (18 results) (of which Invited: 5 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Sphingomyelin regulates the transbilayer movement of diacylglycerol in the plasma membrane of Madin-Darby canine kidney cells2013

    • Author(s)
      Ueda Y, Makino A, Murase-Tamada K, Sakai S, Inaba T, Hullin-Matsuda F, and T. Kobayashi.
    • Journal Title

      FASEB J

      Volume: (in press)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role for phospholipid flippase complex of ATP8A1 and CDC50A proteins in cell migration2013

    • Author(s)
      Kato U, Inadome H, Yamamoto M, Emoto K, Kobayashi T, and M. Umeda
    • Journal Title

      J Biol Chem

      Volume: 288 Pages: 4922-4934

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of phospholipid flippase complex ATP8A1 and CDC50A proteins in cell migration2013

    • Author(s)
      Utako Kato
    • Journal Title

      J Biol Chem

      Volume: 288 Pages: 4922-4934

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum2012

    • Author(s)
      Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, and T. Kobayashi
    • Journal Title

      J Biol Chem

      Volume: 287 Pages: 24397-24411

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A role for sphingomyelin-rich lipid domains in the accumulation of PIP2 to the cleavage furrow during cytokinesis2012

    • Author(s)
      Abe M, Makino A, Hullin-Matsuda F, Kamijo K, Ohno-Iwashita Y, Hanada K, Mizuno H, Miyawaki A, and T. Kobayashi
    • Journal Title

      Mol Cell Biol

      Volume: 32 Pages: 1396-1407

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nano-mechanical recognition of sphingomyelin-rich membrane domains by atomic force microscopy2012

    • Author(s)
      Wang T, Shogomori H, Hara M, Yamada T, and T. Kobayashi
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 74-82

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid flip-flop motions of diacylglycerol and ceramide in phospholipid bilayers2012

    • Author(s)
      Ogushi F, Ishitsuka R, Kobayashi T, and Y. Sugita
    • Journal Title

      Chem Phys Lett

      Volume: 522 Pages: 96-102

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic evidence for the unusual stereochemical configuration of an endosome-specific lipid2012

    • Author(s)
      Tan H-H, Makino A, Sudesh K, Greimel P, and T. Kobayashi
    • Journal Title

      Angew Chem Int Ed

      Volume: 51 Pages: 533-535

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Subcellular localization of sphingomyelin revealed by two toxin-based probes in mammalian cells2012

    • Author(s)
      Rieko Yachi
    • Journal Title

      Genes Cells

      Volume: 17 Pages: 720-727

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The single-giant unilamellar vesicle method reveals lysenin-induced pore formation in lipid membranes containing sphingomyelin2012

    • Author(s)
      Jahangir Md. Alam
    • Journal Title

      Biiochemistry

      Volume: 51 Pages: 5160-5172

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A role for sphingomyelin-rich lipid domains in the accumulation of phosphatidylinositol-4,5-bisphosphate to the cleavage furrow during cytokinesis2012

    • Author(s)
      Mitsuhiro Abe
    • Journal Title

      Mol Cell Biol

      Volume: 32 Pages: 1396-1407

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lipid polarity is maintained in the absence of tight junctions2012

    • Author(s)
      Ikenouchi J, et al
    • Journal Title

      J Biol Chem

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A role for sphingomyelin-rich lipid domains in the accumulation of PIP2 to the cleavage furrow during cytokinesis2012

    • Author(s)
      Abe M, et al
    • Journal Title

      Mol Cell Biol

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid flip-flop motions of diacylglycerol and ceramide in phospholipid bilayers2012

    • Author(s)
      Ogushi, et al
    • Journal Title

      Chem Phys Lett

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic evidence for the unusual stereochemical configuration of an endosome-specific lipid2012

    • Author(s)
      Tan, et al
    • Journal Title

      Angew Chem.Int.Ed.Engl.

      Volume: 51 Pages: 533-535

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescence image screening for chemical compounds modifying cholesterol metabolism and distribution2011

    • Author(s)
      Ishitsuka R, Saito T, Osada H, Ohno-Iwashita Y, and T. Kobayashi
    • Journal Title

      J Lipid Res.

      Volume: 52 Pages: 2084-2094

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescent probes for superresolution imaging of lipid domains on the plasma membrane2011

    • Author(s)
      Mizuno H, Abe M, Dedecker P, Makino A, Rocha S, Ohno-Iwashita Y, Hofkens J, Kobayashi T, and A. Miyawaki
    • Journal Title

      Chem Sci

      Volume: 2 Pages: 1548-1553

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiplex analysis of sphingolipids using amine-reactive tags (iTRAQ)2011

    • Author(s)
      Nabetani T, Makino A, Hullin-Matsuda F, Hirakawa T, Takeoka S, Okino N, Ito M, Kobayashi T, and Y. Hirabayashi
    • Journal Title

      J Lipid Res

      Volume: 52 Pages: 1294-1302

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescence image screening for chemical compounds modifying cholesterol metabolism and distribution2011

    • Author(s)
      Ishitsuka, et al
    • Journal Title

      J Lipid Res

      Volume: 52 Pages: 2084-2094

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SMS1-generated sphingomyelin plays an important role in transferrin trafficking and cell proliferation2011

    • Author(s)
      Shakor, et al
    • Journal Title

      J Biol Chem

      Volume: 286 Pages: 36053-36062

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphatidylglucoside forms specific lipid domains on the outer leaflet of the plasma membrane2010

    • Author(s)
      Murate M, Hayakawa T, Ishii K, Inadome H, Greimel P, Watanabe Y, Nagatsuka Y, Ito K, Ito Y, Takahashi H, Hirabayashi Y, and T. Kobayashi
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 4732-4739

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Marine antifungal theonellamides target 3β-hydroxysterol to activate Rho1 signaling2010

    • Author(s)
      Nishimura S, Arita Y, Honda M, Iwamoto K, Matsuyama A, Shirai A, Kawasaki H, Kakeya H,Kobayashi T, Matsunaga S, and M. Yoshida
    • Journal Title

      Nat Chem Biol

      Volume: 6 Pages: 519-526

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phosphatidylglucoside forms specific lipid domains on the outer leaflet of the plasma membrane2010

    • Author(s)
      Murate, M.
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 4732-9

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Marine antifungal theonellamides target 3β-hydroxysterol to activate Rho1 signaling2010

    • Author(s)
      Nishimura, S.
    • Journal Title

      Nat Chem Biol

      Volume: 6 Pages: 519-26

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Duramycin-induced destabilization of a phosphatidylethanolamine monolayer at the air-water interface observed by vibrational sum-frequency generation spectroscopy2010

    • Author(s)
      Rzeznicka, I.I.
    • Journal Title

      Langmuir

      Volume: 26 Pages: 16055-62

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Protein probes for studying lipid domains2013

    • Author(s)
      Toshihide Kobayashi
    • Organizer
      The fourteenth international membrane research forum
    • Place of Presentation
      京都
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞分裂時におけるホスファチジルイノシトール4,5-二リン酸の分裂溝への局在に対するスフィンゴミエリンドメインの役割2013

    • Author(s)
      小林俊秀
    • Organizer
      第90回日本生理学会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞質分裂におけるスフィンゴミエリンドメインの役割2012

    • Author(s)
      阿部充宏、牧野麻美、ウラン松田フランソワーズ、小林俊秀
    • Organizer
      第85回生化学会大会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] A role for sphingomyelin-rich lipid domains in the accumulation of phosphatidylinositol-4,5-bisphosphate to the cleavage furrow during cytokinesis2012

    • Author(s)
      Abe, M., A. Makino, F. Hullin-Matsuda, and T. Kobayashi
    • Organizer
      Lipid-Protein Interactions in Membranes: Implications for Health and Disease
    • Place of Presentation
      Hyderabad, India
    • Related Report
      2012 Final Research Report
  • [Presentation] エンドソーム特異的脂質の構造、代謝、機能2012

    • Author(s)
      小林俊秀
    • Organizer
      第54回日本脂質生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] Session chair's overview2012

    • Author(s)
      Kobayashi, T.
    • Organizer
      Gordon Reseach Conference on Glycolipid and Sphingolipid Biology
    • Place of Presentation
      Lucca, Italy
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞質分裂におけるスフィンゴミエリンドメインの役割2012

    • Author(s)
      小林俊秀
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] エンドソーム特異的脂質の構造、代謝、機能2012

    • Author(s)
      小林俊秀
    • Organizer
      第54回日本脂質生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A role for sphingomyelin-rich lipid domains in the accumulation of phosphatidylinositol-4,5-bisphosphate to the cleavage furrow during cytokinesis2012

    • Author(s)
      Toshihide Kobayashi
    • Organizer
      Lipid-Protein Interactions in Membranes: Implications for Health and Disease
    • Place of Presentation
      Hyderabad
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Imaging lipids and lipid domains2011

    • Author(s)
      Kobayashi T.
    • Organizer
      International ERATO Symposium on Lipid Structures in and around Proteins
    • Place of Presentation
      阪急エキスポパーク(大阪)(招待講演)
    • Year and Date
      2011-11-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] Imaging lipid domains2011

    • Author(s)
      Kobayashi T.
    • Organizer
      30^<th> Naito conference, "Membrane Dynamics and Lipid Biology [II]"
    • Place of Presentation
      シャトレーゼガトーキングダム札幌(札幌)(招待講演)
    • Year and Date
      2011-06-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Imaging lipids and lipid domains2011

    • Author(s)
      Kobayashi, T.
    • Organizer
      International ERATO Symposium on Lipid Structures in and around Proteins
    • Place of Presentation
      Osaka
    • Related Report
      2012 Final Research Report
  • [Presentation] 脂質のダイナミズムを見る-脂質・蛋白質相互作用の解析2011

    • Author(s)
      小林俊秀
    • Organizer
      第34回日本神経科学大会
    • Place of Presentation
      横浜
    • Related Report
      2012 Final Research Report
  • [Presentation] Imaging lipid domains Naito conference,2011

    • Author(s)
      Kobayashi, T., Abe, M., Ishitsuka, R., Kishimoto, T., Makino, A., Hullin-Matsuda, F.,and M. Murate
    • Organizer
      30^(th)Naito conference "Membrane Dynamics and Lipid Biology [II]"
    • Place of Presentation
      Sapporo
    • Related Report
      2012 Final Research Report
  • [Presentation] Visualization of lipids and lipid domains2011

    • Author(s)
      小林俊秀、阿部充宏、岸本拓磨、牧野麻美、Hullin-Matsuda Francoise、石塚玲子、村手源英
    • Organizer
      第53回日本脂質生化学会
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Imaging of membrane heterogeneity2010

    • Author(s)
      Kobayashi, T.
    • Organizer
      4^<th> ISN Special Conference on Membrane Domains in CNS physiology and pathology
    • Place of Presentation
      Erice, Italy
    • Year and Date
      2010-05-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] 脂質ラフトのイメージング2010

    • Author(s)
      小林俊秀
    • Organizer
      第3回セラミド研究会学術集会
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Tool box for imaging lipids and lipid domains (I) (II)2010

    • Author(s)
      Kobayashi, T.
    • Organizer
      ISN International School: Lipidomics in the nervous system cells
    • Place of Presentation
      Catania, Italy,
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lbl/mainpagelbl.html

    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lbl/mainpagelbl.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lbl/mainpagelbl.html

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 新規なタンパク質およびその利用2010

    • Inventor(s)
      小林俊秀
    • Industrial Property Rights Holder
      理化学研究所
    • Filing Date
      2010-05-14
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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