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Functional adaptation of HIV accessory proteins towardimmune-mediated selective pressure

Research Project

Project/Area Number 22390089
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionKumamoto University

Principal Investigator

UENO Takamasa  熊本大学, エイズ学研究センター, 准教授 (10322314)

Co-Investigator(Kenkyū-buntansha) MIURA Toshiyuki  長崎大学, 熱帯医学研究所, 客員教授 (00296576)
Co-Investigator(Renkei-kenkyūsha) GATANAGA Hiroyuki  国立国際医療研究センター, エイズ治療・研究開発センター, 治療開発室長 (10466211)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2012: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2011: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2010: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywords感染防御 / ワクチン / ウイルス / 感染症 / 免疫学 / 進化
Research Abstract

Impaired HIV-1 Gag, Pol, and Env function has been described inelite controllers (EC) who spontaneously suppress plasma viremia to < 50 RNA copies/mL;however, activity of the accessory protein Nef remains incompletely characterized. Weexamined the ability of 91 Nef sequences, isolated from plasma of 45 EC and 46 chronicprogressors (CP), to down-regulate HLA class I and CD4, up-regulate HLA class II invariantchain (CD74), enhance viral infectivity, and stimulate viral replication in PBMC. Ingeneral, EC Nef sequences were functional; however, all five activities weresignificantly lower in EC compared to CP. Nef from HLA-B*57-expressing EC exhibited poorerCD4 down-regulation function compared to non-B*57 EC, and the number of EC-specificB*57-associated Nef polymorphisms correlated inversely with 4 of 5 Nef functions in theseindividuals. Results indicate that decreased viral protein function, due in part to hostimmune selection pressures, may be a hallmark of the EC phenotype.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (42 results)

All 2013 2012 2011 2010

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (29 results)

  • [Journal Article] Dynamic range of Nef functionsin chronic HIV-1 infection2013

    • Author(s)
      Philip Mwimanzi, Tristan J Markle,Yoko Ogata, Eric Martin, MichiyoTokunaga, Macdonald Mahiti, Xiaomei TKuang, Bruce D Walker, Zabrina L Brumme,Mark A Brockman and *Takamasa Ueno
    • Journal Title

      Virology

      Volume: 439 Issue: 2 Pages: 74-80

    • DOI

      10.1016/j.virol.2013.02.005

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Attenuation of multiple Neffunctions in HIV-1 elite controllers2013

    • Author(s)
      Philip Mwimanzi, Tristan J Markle,Eric Martin, Yoko Ogata, Xiaomei TKuang, Michiyo Tokunaga, MacdonaldMahiti, Florencia Pereyra, ToshiyukiMiura, Bruce D Walker, Zabrina L Brumme,Mark A Brockman and *Takamasa Ueno
    • Journal Title

      Retrovirology

      Volume: 10 Issue: 1 Pages: 1-1

    • DOI

      10.1186/1742-4690-10-1

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] HLA class I down-regulation by HIV-1Nef: What might we learn from naturalsequence variants?2013

    • Author(s)
      Philip Mwimanzi, Tristan J. Markle,Takamasa Ueno, Mark A. Brockman
    • Journal Title

      Viruses

      Volume: 4 Issue: 9 Pages: 1711-1730

    • DOI

      10.3390/v4091711

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Minorcontribution of HLA class I-associatedselective pressure to the variabilityof HIV-1 accessory protein Vpu2012

    • Author(s)
      Zafrul Hasan, Jonathan M Carlson,Hiroyuki Gatanaga, Anh Q. Le, ChansonJ Brumme, Shinichi Oka, Zabrina LBrumme, *Takamasa Ueno
    • Journal Title

      Biochem. Biophys. Res. Comm

      Volume: 421 Issue: 2 Pages: 291-295

    • DOI

      10.1016/j.bbrc.2012.04.002

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theidentification of a small moleculecompound that reduces HIV-1Nef-mediated viral infectivityenhancement2011

    • Author(s)
      Nopporn Chutiwitoonchai, MasateruHiyoshi, Philip Mwimanzi, TakamasaUeno, Akio Adachi, Hirotaka Ode,Hironori Sato, Oliver T. Fackler,Seiji Okada, Shinya Suzu
    • Journal Title

      PLoS ONE

      Volume: 6(11)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of naturally-arising HIV Nefmutations on cytotoxic T lymphocyterecognition and Nef's functionality inprimary macrophages2011

    • Author(s)
      Philip Mwimanzi, Zafrul Hasan, RanyaHassan, Shinya Suzu, Masafumi Takiguchiand*TakamasaUeno
    • Journal Title

      etrovirology

      Volume: 8 Issue: 1 Pages: 50-50

    • DOI

      10.1186/1742-4690-8-50

    • Related Report
      2012 Final Research Report 2011 Annual Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The identification of a small molecule compound that reduces HIV-1 Nef-mediated viral infectivity enhancement2011

    • Author(s)
      Chutiwitoonchai, N., Hiyoshi, M., Mwimanzi, P., Ueno, T., Adachi, A., Ode, H., Sato, H., Fackler, O. T., Okada, S., and Suzu, S
    • Journal Title

      PLoS One

      Volume: 6 Issue: 11 Pages: e27696-e27696

    • DOI

      10.1371/journal.pone.0027696

    • NAID

      120004058203

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Naturallyarising HIV-1 Nef variants conferringescape from cytotoxic T lymphocytesinfluence viral entry co-receptorexpression and susceptibility tosuperinfection2010

    • Author(s)
      Philip Mwimanzi, Zafrul Hasan, MichiyoTokunaga, Hiroyuki Gatanaga, Shinichi Oka, *Takamasa Ueno
    • Journal Title

      Biochem. Biophys. Res.Comm

      Volume: 403 Pages: 422-427

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Failure of effector function of human CD8<sup>+</sup> t cells in NOD/SCID/JAK3<sup>-/-</sup> immunodeficient mice transplanted with human CD34<sup>+</sup> hematopoietic stem cells2010

    • Author(s)
      Yoshinori Sato, Hiroshi Takata, NaokiKobayashi, Sayaka Nagata, NaomiNakagata, Takamasa Ueno, MasafumiTakiguchi
    • Journal Title

      PLoS ONE

      Volume: 5 Issue: 10 Pages: e13109-e13109

    • DOI

      10.1371/journal.pone.0013109

    • NAID

      120003256064

    • URL

      https://pure.teikyo.jp/en/publications/d4cdbf80-0e5a-4670-bd5f-4b5373de8307

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamicinterplay between viral adaptation andimmune recognition during HIV-1infection2010

    • Author(s)
      Chihiro Motozono, Philip Mwimanzi,*Takamasa Ueno
    • Journal Title

      Protein & Cell

      Volume: 1 Pages: 514-519

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Differentin vivo effects of HIV-1immunodominant epitope-specific CTLson selection of escape mutant viruses2010

    • Author(s)
      Koizumi H, Hashimoto M, Fujiwara M,Murakoshi H, Chikata T, Borghan MA,Hachiya A, Kawashima Y, Takata H, UenoT, Oka S, Takiguchi M
    • Journal Title

      Journal of Virology

      Volume: 84 Pages: 5508-5519

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Naturally arising HIV-1 Nef variants conferring escape from cytotoxic T lymphocytes influence viral entry co-receptor expression and susceptibility to superinfection2010

    • Author(s)
      Philip Mwimanzi, et al
    • Journal Title

      Biochem.Biophys.Res.Comm.

      Volume: 403 Pages: 422-427

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic interplay between viral adaptation and immune recognition during HIV-1 infection2010

    • Author(s)
      Chihiro Motozono
    • Journal Title

      Protein & Cell

      Volume: 1 Pages: 514-519

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] and the Acute HIVand International HIV Controllersstudy group. Reduced HIV-1 NefFunction in Acute/Early Individualswho become Viremic Controllers2013

    • Author(s)
      X. Kuang, A Le, P Mwimanzi, T Markle,R Danroth, T Ueno, T Miura, B Walker,Z Brumme, M Brockman
    • Organizer
      20thConference on Retroviruses andOpportunistic Infections (CROI)
    • Place of Presentation
      Georgia World Congress Center, Atlanta,USA
    • Related Report
      2012 Final Research Report
  • [Presentation] The impact of a single amino acid difference in CDR3・onTCR・・・cross-reactivity、ワークショップ 32 ヒト免疫、2012

    • Author(s)
      Chihiro Motozono, John S. Bridgeman,Masaaki Miyazawa, Andrew K. Sewell andTakamasa Ueno
    • Organizer
      第41回日本免疫学会総会・学術集会
    • Place of Presentation
      神戸国際会議場、兵庫
    • Related Report
      2012 Final Research Report
  • [Presentation] Genetic and functional analysesof HIV-1 Nef in elite controllers2012

    • Author(s)
      上 野 貴 将 、 Mwimanzi Philip 、 MarkleTristan、緒方陽子、 徳永美知代、MahitiMacdonald、 三浦聡之、 Pereyra Florencia、Walker Bruce、 Brumme Zabrina、 BrockmanMark
    • Organizer
      第60回日本ウイルス学会学術集会
    • Place of Presentation
      グランキューブ大阪(大阪国際会議場)
    • Related Report
      2012 Final Research Report
  • [Presentation] HLA class I-mediatedsequence polymorphism in HIV-1accessory protein Vpu2012

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme,Takamasa Ueno
    • Organizer
      The 13thKUMAMOTO AIDS Seminar and GCOE JointInternational Symposium
    • Place of Presentation
      Hotel NikkoKumamoto and Aso Resort GrandvrioHotel, Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] HIV-1 immune escape andcross-reactivity profiles ofvirus-specific cytotoxic Tlymphocytes, YIS-A Session II2012

    • Author(s)
      Chihiro Motozono, John J. Miles,Zafrul Hasan, Hiroyuki Gatanaga,Meribe Stanley, Shinichi Oka, MasaakiMiyazawa, Andrew K. Sewell, TakamasaUeno
    • Organizer
      13thKumamoto AIDS Seminar Global COE JointInternational Symposium
    • Place of Presentation
      Aso ResortGRANDVRIO, Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Functional impairment ofHIV-1 Nef in elite controllers and itscorrelation with immune-mediatedselective pressure2012

    • Author(s)
      T. Ueno
    • Organizer
      13th Kumamoto AIDSSeminar Global COE Joint InternationalSymposium
    • Place of Presentation
      Aso Resort GrandvrioHotel,Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Modulation of HIV-1Nef-mediated HLA class Idown-regulation activity duringdisease progression2012

    • Author(s)
      M. Mahiti, P. Mwimanzi, Y. Ogata, M.Tokunaga, B. Walker, Z. Brumme, M.Brockman, T. Ueno
    • Organizer
      13th KumamotoAIDS seminar
    • Place of Presentation
      Aso Resort GrandiovrioHotel, Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] HLA-B35 拘束性 HIV 特異的 TCR は野生型抗原に高い特異性を有する、学術賞ならびに学術奨励賞候補口演2012

    • Author(s)
      本園千尋、John J. Miles、宮澤正顯、上野貴将、Andrew K. Sewell
    • Organizer
      第21回組織適合性学会大会
    • Place of Presentation
      明治大学、東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Impact of HLA class I-driven geneticvariability in HIV-1 accessory genevpu2012

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, S. Oka, Z. Brumme, Takamasa Ueno
    • Organizer
      COLD SPRING HARBOR ASIACONFERENCES: Frontiers of Immunologyin Health and Disease
    • Place of Presentation
      Suzhou DushuLake Conference Center, China
    • Related Report
      2012 Final Research Report
  • [Presentation] Genetic and functional analyses of HIV-1 Nef in elite controllers.2012

    • Author(s)
      Philip Mwimanzi
    • Organizer
      第60回日本ウイルス学会学術集会
    • Place of Presentation
      大阪国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] Nefのウイルスレセプター発現低下機能と病態2011

    • Author(s)
      緒方陽子, ら
    • Organizer
      第25回日本エイズ学会学術集会・総会
    • Place of Presentation
      ハイアットリージェンシー東京
    • Year and Date
      2011-12-02
    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
  • [Presentation] Impaired viralinfectivity and viral replicationcapacity by nef alleles from HIV elitecontrollers2011

    • Author(s)
      Philip Mwimanzi, Tristan Markle,Michiyo Tokunaga, Toshiyuki Miura,Eric Martin, Florencia Pereyra, BruceWalker, Zabrina Brumme, Mark Brockman,Takamasa Ueno
    • Organizer
      25th Annual Meeting ofJapanese Society for AIDS Research
    • Place of Presentation
      Tokyo Hyatt Regency, Tokyo, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Impact of HLA class I-drivengenetic variability in HIV-1 accessorygenes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      2011 The Annual Meeting of theJapanese Society for Immunology
    • Place of Presentation
      Chiba,Makuhari Messe, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Subtle effect of HLA classI-driven selective forces on thevariability of HIV-1 accessory genes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      12th Kumamoto AIDS Seminar and GCOEJoint International Symposium
    • Place of Presentation
      HotelNikko Kumamoto and Aso ResortGrandvrio Hotel, Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Population analysis ofviral replication capacity by nefalleles of HIV elite controllers2011

    • Author(s)
      Philip Mwimanzi, Tristan Markle,Michiyo Tokunaga, Toshiyuki Miura,Eric Martin, Florencia Pereyra, BruceWalker, Zabrina Brumme, Mark Brockman,Takamasa Ueno
    • Organizer
      12thKumamoto AIDS Seminar
    • Place of Presentation
      Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Thecross-reactivity footprints ofHIV-specific CTLs2011

    • Author(s)
      Chihiro Motozono, John J. Miles, LindaWooldridge, David A. Price, TakamasaUeno, Andrew K. Sewell
    • Organizer
      12th Kumamoto AIDSSeminar and GCOE Joint InternationalSymposium
    • Place of Presentation
      Hotel Nikko Kumamoto and Aso Resort Grandvrio Hotel, Kumamoto,Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Impairment ofviral replication capacity by nefalleles from HIV elite controllers.Frontiers of Retrovirology2011

    • Author(s)
      Philip Mwimanzi, Tristan Markle,Michiyo Tokunaga, Toshiyuki Miura,Eric Martin, Florencia Pereyra, BruceWalker, Zabrina Brumme, MarkBrockman,Takamasa Ueno
    • Organizer
      Complexretroviruses, retroelements and theirhosts
    • Place of Presentation
      Amsterdam, Netherlands
    • Related Report
      2012 Final Research Report
  • [Presentation] Impairment of virioninfectivity by nef alleles from HIVelite controllers2011

    • Author(s)
      Philip Mwimanzi, Tristan Markle,Michiyo Tokunaga, Toshiyuki Miura,Eric Martin, Florencia Pereyra, BruceWalker, Zabrina Brumme, Mark Brockman,Takamasa Ueno
    • Organizer
      Nef activity inenhancement of virion infectivity isimpaired in HIV elite controllers
    • Place of Presentation
      XV,International Congress of Virology,Sapporo Convention Center,Sapporo,Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Effect of HLA class I-mediatedselective pressure on HIV-1 accessorygenes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      International Union ofMicrobiological Societies 2011Congress: Virus and host response
    • Place of Presentation
      Sapporo Convention Center, Sapporo,Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Impairment of virioninfectivity by nef alleles from HIVelite controllers2011

    • Author(s)
      Philip Mwimanzi, Tristan Markle,Michiyo Tokunaga, Toshiyuki Miura,Eric Martin, Florencia Pereyra, BruceWalker, Zabrina Brumme, Mark Brockman,Takamasa Ueno
    • Organizer
      Keystone SymposiaHIV Evolution
    • Place of Presentation
      Genomics andPathogenesis, Canada
    • Related Report
      2012 Final Research Report
  • [Presentation] Impact of HLA class I-drivengenetic variability in HIV-1 accessorygenes in Japanese sequences. KeystoneSymposia HIV Evolution2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      Genomics andPathogenesis
    • Place of Presentation
      Whistler, Canada
    • Related Report
      2012 Final Research Report
  • [Presentation] Impairment of viral replication capacity by nef alleles from HIV elite controllers2011

    • Author(s)
      Philip Mwimanzi, et al
    • Organizer
      Frontiers of Retrovirology
    • Place of Presentation
      Movenpick Hotel Amsterdam, Netherlands
    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
  • [Presentation] Effect of HLA class I-mediated selective pressure on HIV-1 accessory genes2011

    • Author(s)
      Zafrul Hasan, et.al.
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo Convention Center, Japan
    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
  • [Presentation] Impact of HLA class I-driven genetic variability in HIV-1 accessory genes in Japahese sequences2011

    • Author(s)
      Zafrul Hasan, et.al.
    • Organizer
      Keystone Symposia HIV Evolution. Genomics and Pathogenesis
    • Place of Presentation
      Whistler Convention Center, Canada
    • Related Report
      2010 Annual Research Report
  • [Presentation] Impairment of virion infectivity by nef alleles from HIV elite controllers2011

    • Author(s)
      Philip Mwimanzi, et al
    • Organizer
      Keystone Symposia HIV Evolution. Genomics and Pathogenesis
    • Place of Presentation
      Whistler Convention Center, Canada
    • Related Report
      2010 Annual Research Report
  • [Presentation] Nef activity in downregulation of viral receptors andprotection of HIV superinfection ismodulated by Nef mutations that conferCTL escape during acute infection2010

    • Author(s)
      Mwimanzi, P., Oniangue-Ndza, C., AllenT.M., and Ueno,T
    • Organizer
      11th KUMAMOTO AIDS Seminar GCOE JointInternational Symposium
    • Place of Presentation
      Hotel NikkoKumamoto and Aso Grand Vrio Hotel,Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Implication of the effects of hostimmune responses on the HIV-1 vpu geneevolution2010

    • Author(s)
      Zafrul Hasan, Hiroyuki Gatanaga,Shinichi Oka, and Takamasa Ueno
    • Organizer
      24th Annual Meeting of theJapanese Society for AIDS Research
    • Place of Presentation
      Grand Prince Hotel Takanawa, PrinceSakura Tower, Takanawa, Tokyo
    • Related Report
      2012 Final Research Report
  • [Presentation] Implication of the effects of hostimmune responses on the HIV-1 vpu geneevolution2010

    • Author(s)
      Zafrul Hasan, Hiroyuki Gatanaga,Shinichi Oka, and Takamasa Ueno
    • Organizer
      The 11th KUMAMOTO AIDSSeminar and GCOE Joint InternationalSymposium
    • Place of Presentation
      Hotel Nikko Kumamoto andAso Resort Grandvrio Hotel, Kumamoto,Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] CTL-escape Nefvariants influence CCR5 downregulation and HIV superinfectionsusceptibility2010

    • Author(s)
      Mwimanzi P., Ueno T
    • Organizer
      The 14thInternational Conference ofImmunology (ICI)
    • Place of Presentation
      Kobe InternationalExhibition and Portopia Hotel, Kobe,Japan
    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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