A Study on Mathematical Programming based on Net modeling andLarge-scale Optimization Algorithms

• Project/Area Number: 22500031
• Research Category: Grant-in-Aid for Scientific Research (C)
• Allocation Type: Single-year Grants
• Section: 一般
• Research Field: Software
• Research Institution: University of the Ryukyus
• Principal Investigator: NAKAMURA Morikazu 琉球大学, 工学部, 教授 (80237437)
• Co-Investigator(Kenkyū-buntansha): OKAZAKI Takeo 琉球大学, 工学部, 講師 (90213925)
• Project Period (FY): 2010 – 2012
• Project Status: Completed (Fiscal Year 2012)
• Budget Amount: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000); Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000); Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000); Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
• Keywords: ネットモデリング / メタヒューリスティックス / 並列処理 / 組合せ最適化 / 最適化 / バイオ情報処理 / ネットモデル / 大規模最適化 / ハイブリッド解法 / 分布推定アルゴリズム / ネット理論 / 数理計画 / 大規模最適化計算

Research Abstract

In this research, we considered automatic generation of mathematical programming problems based on a net-modeling approach and proposed heuristic algorithms for large-scale optimization problems. We confirmed that mixed integer programming problems could be generated for iterative job-shop scheduling problems from their hybrid Petri net models. And also we developed strategic searching algorithms based on estimation distribution algorithms and proposed hybrid algorithms of meta-heuristic algorithms and an exact algorithm. Experimental evaluation showed effectiveness of our proposals for large-scale optimization problems compared to traditional approaches.

Research Products

• [Journal Article] Hybrid Optimization based on Mathematical Programming and Metaheuristics and its Parallel Processing, Proceedings of International Technical Conference on Circuits/Systems (2013)
  • Author(s): Keitaro Tamaki, Yogalakshmi Kannaiahnaidu, Takeshi Tengan, Morikazu Nakamura
  • Journal Title: Computers and Communications, accepted
  • Peer Reviewed
• [Journal Article] A MapReduce Algorithm for Minimum Vertex Cover Problem, Proceedings of International Technical Conference on Circuits/Systems (2013)
  • Author(s): Daiki Kinjo, Morikazu Nakamura
  • Journal Title: Computers and Communications
  • Peer Reviewed
• [Journal Article] A frequency-based linguistic approach to protein decoding and design: Simple concepts, diverse applications, and the SCS Package,Computational and Structural Biotechnology Journal (2013)
  • Author(s): Kenta Motomura, Morikazu Nakamura, Joji M
  • Volume: 5(6)
  • URL: http://dx.doi.org/10.5936/csbj.201302010
  • Peer Reviewed
• [Journal Article] Global Network Alignment Method Using Node Similarity Based on Network Characteristics (2013)
  • Author(s): Hitoshi Afuso, Takeo Okazaki, Morikazu Nakamura
  • Journal Title: IPSJ Transactions on Bioinformatics Volume: 6 Pages: 2-8
  • NAID: 130003366949
  • URL: http://id.nii.ac.jp/1001/00091473/
  • Peer Reviewed
• [Journal Article] A frequency-based linguistic approach to protein decoding and design: Simple concepts, diverse applications, and the SCS Package (2013)
  • Author(s): Kenta Motomura
  • Journal Title: Computational and Structural Biotechnology Journal Volume: 5(6) Issue: 6 Pages: 1-1
  • DOI: 10.5936/csbj.201302010
  • Peer Reviewed
• [Journal Article] Word Decoding of Protein Amino Acid Sequences with Availability Analysis: A Linguistic Approach (2012)
  • Author(s): Kenta Motomura, Tomohiro Fujita, Motosuke Tsutsumi, Satsuki Kikuzato, Morikazu Nakamura,Joji M. Otaki
  • Journal Title: PLoS ONE Volume: 7(11) Issue: 11 Pages: e50039-e50039
  • DOI: 10.1371/journal.pone.0050039
  • Peer Reviewed
• [Journal Article] Artificial Data Generation Scheme Based on Network Alignment for Evaluation Considering Structural Diversity (2012)
  • Author(s): Hitoshi Afuso, Takeo Okazaki, Morikazu Nakamura
  • Journal Title: International Journal of Computer Science & Network Security Volume: 12(11) Pages: 59-63
  • Peer Reviewed
• [Journal Article] Hybrid approaches based on simulated annealing and an exact algorithm for mixed integer programming problems (2012)
  • Author(s): Keitaro Tamaki, Takeshi Tengan, Morikazu Nakamura
  • Journal Title: Proceedings of The Third International Conference on Networking and Computing, IEEE Press Pages: 435-440
  • DOI: 10.1109/icnc.2012.82
  • Peer Reviewed
• [Journal Article] Asynchronous Strategy of Parallel Hybrid APproach of GA and EDA for Function Optimization (2012)
  • Author(s): Said Mohamed Said, Morikazu Nakamura
  • Journal Title: Proceedings of The Third International Conference on Networking andComputing, IEEE Press Pages: 420-428
  • DOI: 10.1109/icnc.2012.80
  • Peer Reviewed
• [Journal Article] A Hierarchical Hybrid Evolutionary Computation for Continuous Function Optimization (2012)
  • Author(s): Said Mohamed Said, Senlin Guan, Morikazu Nakamura
  • Journal Title: International Journal of Next-Generation Computing
  • URL: http://perpetualinnovation.net/ojs/index.php/ijngc/article/viewArticle/135
  • Peer Reviewed
• [Journal Article] PBIL と厳密解法の融合による繰返しスケジューリング問題の解法 (2012)
  • Author(s): 粟國信治, 官森林, 名嘉村盛和
  • Journal Title: 電子情報通信学会技術研究報告(システム数理と応用) Volume: 86 Pages: 73-78
  • NAID: 110009545452
  • Peer Reviewed
• [Journal Article] Artificial Data Generation Scheme Based on Network Alignment for Evaluation Considering Structural Diversity (2012)
  • Author(s): Hitoshi Afuso
  • Journal Title: International Journal of Computer Science & Network Security Volume: 12(11) Pages: 60-66
  • Peer Reviewed
• [Journal Article] Hybrid approaches based on simulated annealing and an exact algorithm for mixed integer programming problems (2012)
  • Author(s): Keitaro Tamaki
  • Journal Title: Proceedings of The Third International Conference on Networking and Computing, IEEE Press Volume: NO Pages: 1-1
  • Peer Reviewed
• [Journal Article] Asynchronous strategy of parallel hybrid approach of GA and EDA for function optimization, (2012)
  • Author(s): Said Mohamed Said
  • Journal Title: Proceedings of The Third International Conference on Networking and Computing, IEEE Press Volume: NO Pages: 1-1
  • Peer Reviewed
• [Journal Article] Parallel enhanced hybrid evolutionary algorithm for continuous function optimization (2012)
  • Author(s): Said Mohamed Said
  • Journal Title: Proceedings of the 7th International Conference on P2P, Parallel, Grid, Cloud and Internet Computing Volume: NO Pages: 1-1
  • Peer Reviewed
• [Journal Article] PBILと厳密解法の融合による繰返しスケジューリング問題の解法 (2012)
  • Author(s): 粟國信治, 官森林, 名嘉村盛和
  • Journal Title: 電子情報通信学会技術研究報告(システム数理と応用) Volume: MSS-2011-86 Pages: 73-78
  • NAID: 110009545452
• [Journal Article] Net Modeling and A Hybrid Algorithm for Cyclic Scheduling Problems,Proceedings of The 26th International Technical Conference on Circuits/Systems (2011)
  • Author(s): Shinji Aguni, Senlin Guan and Morikazu Nakamura
  • Journal Title: Proceedings of The 26th International Technical Conference on Circuits/Systems Pages: 23-26
  • Peer Reviewed
• [Journal Article] 経路ラベル決定法に基づくネットワーク特徴量の拡張とそれらを用いた辺ラベル付き有向グラフ間類似度の提案 (2011)
  • Author(s): 安富祖仁, 岡崎威生, 名嘉村盛和
  • Journal Title: 情報処理学会研究報告(バイオ情報学) Volume: 15 Pages: 1-7
  • NAID: 110008803120
  • Peer Reviewed
• [Journal Article] Short readシーケンサーデータに対する複次重複処理による結合信頼性向上の検討 (2011)
  • Author(s): 大城絢子, 岡崎威生, 安富祖仁, 名嘉村盛和
  • Journal Title: 情報処理学会研究報告(バイオ情報学) Volume: 19 Pages: 1-2
  • NAID: 110008694781
  • Peer Reviewed
• [Journal Article] GPGPU によるマルチプルアラインメントの並列計算 (2011)
  • Author(s): 布田丈浩, 名嘉村盛和
  • Journal Title: 電子情報通信学会技術研究報告(システム数理と応用) Volume: 105 Pages: 115-119
  • NAID: 110008746017
  • Peer Reviewed
• [Journal Article] Net Modeling and A Hybrid Algorithm for Cyclic Scheduling Problems (2011)
  • Author(s): Shinji Aguni, Senl in Guan, Morikazu Nakamura
  • Journal Title: Proceedings of The 26th International Technical Conference on Circuits/Systems, Computers and Communications Pages: 23-26
  • Peer Reviewed
• [Journal Article] GPGPUによるマルチプルアラインメントの並列計算 (2011)
  • Author(s): 布田丈浩, 名嘉村盛和
  • Journal Title: 電子情報通信学会技術研究報告(システム数理と応用) Volume: 111(105) Pages: 115-119
  • NAID: 110008746017
• [Journal Article] Iterative parallel evolutionary computation based on master-slave cooperation, Proceedings of The International Technical Conference on Circuits/Systems (2010)
  • Author(s): Said Mohamed Said, Morikazu Nakamura
  • Journal Title: Computers and Communications Pages: 981-984
  • Peer Reviewed
• [Journal Article] Hybrid Petri Nets and Metaheuristic Approach to Farm Work Scheduling (2010)
  • Author(s): Senlin Guan, Morikazu Nakamura, Takeshi Shikanai
  • Journal Title: Advances in Petri Net Theory and Applications Pages: 137-152
  • DOI: 10.5772/10298
  • ISBN: 9789533071084
  • Peer Reviewed
• [Journal Article] A Hybrid Approach of EDAs and GAs based on Master/Slave Cooperation for Continuous Function Optimization (2010)
  • Author(s): Said Mohamed Said, Morikazu Nakamura
  • Journal Title: Proceedings of the World Congress on Nature and Biologically Inspired Computing Pages: 251-255
  • DOI: 10.1109/nabic.2010.5716355
  • Peer Reviewed
• [Journal Article] Migration Effects on Tree Topology of Parallel Evolutionary Computation (2010)
  • Author(s): Hayato Miyagi, Takeshi Tengan, Said Mohamed Said, Morikazu Nakamura
  • Journal Title: Proceedings of IEEE TENCON Pages: 1601-1606
  • DOI: 10.1109/tencon.2010.5686041
  • Peer Reviewed
• [Journal Article] Iterative parallel evolutionary computation based on master-slave cooperation (2010)
  • Author(s): Said Mohamed Said
  • Journal Title: Procs of The ITC-CSCC 2010 Volume: 15 Pages: 981-984
  • Peer Reviewed
• [Journal Article] Migration Effects on Tree Topology of Parallel Evolutionary Computation (2010)
  • Author(s): Hayato Miyagi
  • Journal Title: Proceedings of IEEE TENCON Pages: 1601-1606
  • Peer Reviewed
• [Journal Article] A Hybrid Approach of EDAs and GAs based on Master/Slave Cooperation for Continuous Function (2010)
  • Author(s): Said Mohamed Said
  • Journal Title: Procs.of the World Congress on Nature and Biologically Inspired Pages: 251-255
  • Peer Reviewed
• [Presentation] A Hybrid Approach to Cyclic Scheduling Problems based on PBIL and Exact Algorithms (2012)
  • Author(s): 粟國 信治, 官 森林,名嘉村盛和
  • Organizer: 電子情報通信学会技術研究報告 システム数理とその応用
  • Place of Presentation: 東京
  • Year and Date: 2012-03-08
• [Presentation] 大規模繰り返しジョブショップスケジューリング問題に対するMIPソルバーとSAによるハイブリッド解法 (2011)
  • Author(s): 成田浩基
  • Organizer: 電子情報通信学会総合大会
  • Place of Presentation: (DVDROMで発表)
  • Year and Date: 2011-03-14
• [Book] Advances in Petri Net Teory and Applications, Chapter 8 : Hybrid Petri Nets and Metaheuristic Approach to Farm Work Scheduling (2010)
  • Author(s): Senlin Guan
  • Publisher: InTech