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Detection of the conformational changes at a catalytic site of molecular motor

Research Project

Project/Area Number 22770156
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionWaseda University (2011)
Gakushuin University (2010)

Principal Investigator

ADACHI Kengo  早稲田大学, 理工学術院, 研究員 (60370128)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords1分子計測 / 分子モーター / 構造変化 / F1-ATPase / 触媒部位
Research Abstract

Nucleotide-driven molecular motor operates by the coupling between mechanical work and chemical reaction in the catalytic site : binding/release of nucleotides and ligand, and the hydrolysis. Induced fit, proposed by Daniel Koshland, and induced. unfit. that is the reverse process are expected to underlie the operation mechanism. Here, by using fluorescently labeled(Cy3) ATP we have directly detected the conformational changes at the catalytic site on. subunit, which are induced by binding and release of nucleotide/ligand, while a single molecule of F1-ATPase is rotating.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (21 results)

All 2012 2011 2010 2009

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (9 results) Book (3 results)

  • [Journal Article] Torque generation in F_1-ATPase devoid of the entire amino-terminal helix of the rotor that fills half of the stator orifice.2011

    • Author(s)
      Ayako Kohori, Ryohei Chiwata, Mohammad Delawar Hossain, Shou Furuike, Katsuyuki Shiroguchi, Kengo Adachi, Masasuke Yoshida, and Kazuhiko Kinosita, Jr.
    • Journal Title

      Biophys. J.

      Volume: 101 Pages: 188-195

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Resolving stepping rotation in Thermus thermophilus H^+-ATPase/synthase with an essentially drag-free probe.2011

    • Author(s)
      Shou Furuike, Masahiro Nakano, Kengo Adachi, Hiroyuki Noji, Kazuhiko Kinosita, Jr., and Ken Yokoyama
    • Journal Title

      Nat. Commun.

      Volume: 2 Pages: 233-233

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Resolving stepping rotation in Thermus thermophilis H+-ATPase/synthase with an essentially drag-free probe2011

    • Author(s)
      Furuike, S., et al.
    • Journal Title

      Nat. Commun.

      Volume: 2 Issue: 1 Pages: 223-239

    • DOI

      10.1038/ncomms1215

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Torque generation in F1-ATPase devoid of the entire amino-terminal helix of the rotor that fills half of the stator orifice2011

    • Author(s)
      Chiwata, R., et al.
    • Journal Title

      Biophys. J.

      Volume: 101 Issue: 1 Pages: 188-195

    • DOI

      10.1016/j.bpj.2011.05.008

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Resolving stepping rotation in Thermus thermophilus H^+-ATPase/synthase with an essentially drag-free probe.2011

    • Author(s)
      Shou Furuike, et al.
    • Journal Title

      Nat.Commun.

      Volume: 2 Pages: 233-233

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stimulation of F_1-ATPase activity by sodium dodecyl sulfate.2010

    • Author(s)
      Mohammad Delawar Hossain, Shou Furuike, Yasuhiro Onoue, Kengo Adachi, Masasuke Yoshida, and Kazuhiko Kinosita Jr.
    • Journal Title

      Biochim. Biophys. Acta.(Bioenergetics)

      Volume: 1797 Pages: 435-442

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Chemo-mechanical coupling in F_1-ATPase revealed by catalytic site occupancy during active catalysis.2010

    • Author(s)
      Rieko Shimo-Kon, Eiro Muneyuki, Hiroshi Sakai, Kengo Adachi, Masasuke Yoshida, and Kazuhiko Kinosita Jr.
    • Journal Title

      Biophys. J.

      Volume: 98 Pages: 1227-1236

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Stimulation of F_1-ATPase activity by sodium dodecyl sulfate.2010

    • Author(s)
      Mohammad Delawar Hossain, et al.
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1797 Pages: 435-442

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chemo-Mechanical Coupling in F_1-ATPase Revealed by Catalytic Site Occupancy during Catalysis.2010

    • Author(s)
      Rieko Shimo-Kon, et al.
    • Journal Title

      Biophysical Journal

      Volume: 98 Pages: 1227-1236

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 回転モーターF1-ATPaseの強制回転によるヌクレオチドアフィニティの操作(Manipulating the Nucleotides Affinity in Rotary Motor of F1-ATPase by Forced Rotation)2011

    • Author(s)
      足立健吾
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(兵庫県)
    • Year and Date
      2011-09-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] 回転モーターF_1-ATPaseの強制回転によるヌクレオチドアフィニティの操作(Manipulating the Nucleotides Affinity in Rotary Motor of F1-ATPase by Forced Rotation)2011

    • Author(s)
      足立健吾、大岩和弘、西坂崇之、吉田賢右、木下一彦
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学・姫路書写キャンパス
    • Related Report
      2011 Final Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合した蛍光性ヌクレオチドの位置と向きの測定2010

    • Author(s)
      足立健吾、政池知子、大岩和弘、西坂崇之
    • Organizer
      第36回日本生体エネルギー研究会 & 特定領域研究「革新的ナノバイオ」合同シンポジウム
    • Place of Presentation
      大阪大学銀杏会館
    • Related Report
      2011 Final Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合した蛍光性ヌクレオチドの位置と向きの測定(Localization and Orientation of Single Fluorescent Nucleotides Bound to the Catalytic Sites in Rotary Motor F_1-ATPase)2010

    • Author(s)
      足立健吾、政池知子、大岩和弘、西坂崇之
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学・川内キャンパ
    • Related Report
      2011 Final Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合したヌクレオチドの高精度位置検出」特定領域研究「膜超分子モーターの革新的ナノサイエンス2010

    • Author(s)
      足立健吾、政池知子、大岩和弘、西坂崇之
    • Organizer
      第5回班会議
    • Place of Presentation
      学習院大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合したヌクレオチドの高精度位置検出2010

    • Author(s)
      足立健吾
    • Organizer
      特定領域研究「膜超分子モーターの革新的ナノサイエンス」第5回班会議
    • Place of Presentation
      学習院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合した蛍光性ヌクレオチドの位置と向きの測定2010

    • Author(s)
      足立健吾
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学・川内キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合した蛍光性ヌクレオチドの位置と向きの測定2010

    • Author(s)
      足立健吾
    • Organizer
      第36回日本生体エネルギー研究会&特定領域研究「革新的ナノバイオ」合同シンポジウム
    • Place of Presentation
      大阪大学銀杏会館
    • Related Report
      2010 Annual Research Report
  • [Presentation] 回転分子モーターF_1-ATPaseの触媒部位へ結合したヌクレオチドの高精度位置検出(High-Accuracy Localization of Single Nucleotides Bound to the Catalytic Sites in Rotary Motor F_1-ATPase)2009

    • Author(s)
      足立健吾、政池知子、大岩和弘、西坂崇之
    • Organizer
      日本生物物理学会第47回年会
    • Place of Presentation
      徳島文理大学・アスティとくしま
    • Related Report
      2011 Final Research Report
  • [Book] Rotational catalysis by F_1-ATPase In : Comprehensive Biophysics, Vol.8.Bioenergetics Stuart Ferguson, Ed2012

    • Author(s)
      Kengo Adachi, Takayuki Nishizaka, and Kazuhiko Kinosita, Jr
    • Publisher
      Academic Press
    • Related Report
      2011 Final Research Report
  • [Book] Chemo-Mechanical Coupling in the Rotary Molecular Motor F_1-ATPase.In : Single Molecule Spectroscopy in Chemistry, Physics and Biology, Graslund A, Rigler R and Jerker Widengren(eds.)2010

    • Author(s)
      Kengo Adachi, Shou Furuike, Mohammad Delawar Hossain, Hiroyasu Itoh, Kazuhiko Kinosita, Jr. Yasuhiro Onoue and Rieko Shimo-Kon
    • Publisher
      Springer
    • Related Report
      2011 Final Research Report
  • [Book] Chemo-Mechanical Coupling in the Rotary Molecular Motor F_1-ATPase.2010

    • Author(s)
      Kengo Adachi, et al.
    • Publisher
      Single Molecule Spectroscopy in Chemistry, Physics and Biology Vol.96 (Springer)
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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