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The molecular mechanisms of heterochromatin establishment and maintenance

Research Project

Project/Area Number 23370004
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Genome dynamics
Research InstitutionNagoya City University (2012-2013)
The Institute of Physical and Chemical Research (2011)

Principal Investigator

NAKAYAMA Jun-ichi  名古屋市立大学, システム自然科学研究科, 准教授 (60373338)

Co-Investigator(Renkei-kenkyūsha) HAYASHI Aki  独立行政法人理化学研究所, クロマチン動態研究チーム, 研究員 (80399534)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2013: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2012: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2011: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywords遺伝子 / 発現制御 / ヘテロクロマチン / RNA干渉 / 分裂酵母 / RNAi / ユビキチン化
Research Abstract

In this research program, we tried to gain a better understanding of the molecular mechanisms underlying the establishment and maintenance of higher-order chromatin structure, heterochromatin. Using fission yeast as a model organism, we employed a genetic screening and successfully identified two novel RNAi factors, Ers1 and Dsh1, involved in heterochromatin assembly. Further analyses uncovered that these factors play roles in recruiting RNAi-effector complexes, such as RDRC, and promote siRNA production to form higher-order chromatin structure.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (46 results)

All 2014 2013 2012 2011 Other

All Journal Article (13 results) (of which Peer Reviewed: 12 results,  Acknowledgement Compliant: 1 results) Presentation (22 results) (of which Invited: 4 results) Book (10 results) Remarks (1 results)

  • [Journal Article] Biochemical and structural properties of heterochromatin protein 1: understanding its role in chromatin assembly.2014

    • Author(s)
      Nishibuchi G, Nakayama J
    • Journal Title

      J Biochem

      Volume: 56 Issue: 1 Pages: 11-20

    • DOI

      10.1093/jb/mvu032

    • NAID

      40020124382

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Spt6 prevents transcription-coupled loss of posttranslationally modified histone H3.2013

    • Author(s)
      Kato H, Okazaki K, Iida T, Nakayama J, Murakami Y, Urano T.
    • Journal Title

      Sci Rep.

      Volume: 3 Issue: 1 Pages: 2186-2186

    • DOI

      10.1038/srep02186

    • NAID

      120006539377

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single Cell Visualization of Yeast Gene Expression Shows Correlation of Epigenetic Switching Between Multiple Heterochromatic Regions Through Multiple Generations2013

    • Author(s)
      Yasunobu Mano, Tetsuya J. Kobayashi, Jun-ichi Nakayama, Hiroyuki Uchida, Masaya Oki
    • Journal Title

      Plos Biology

      Volume: 11 Issue: 7 Pages: e1001601-e1001601

    • DOI

      10.1371/journal.pbio.1001601

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] C-terminus of the Sgf73 subunit of SAGA and SLIK is important for retention in the larger complex and for heterochromatin boundary function.2013

    • Author(s)
      Kamata K, Hatanaka A, Goswami G, Shinmyozu K, Nakayama JI, Urano T, Hatashita M, Uchida H, Oki M.
    • Journal Title

      Genes cells

      Volume: 9 Issue: 9 Pages: 823-837

    • DOI

      10.1111/gtc.12075

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] ヘテロクロマチン構造の形成とRNAサイレンシング2013

    • Author(s)
      中山潤一
    • Journal Title

      生化学

      Volume: 85 Pages: 565-570

    • NAID

      10031190087

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel RNAi protein, Dsh1, assembles RNAi machinery on chromatin to amplify heterochromatic siRNA2012

    • Author(s)
      Kawakami K, Hayashi A, Nakayama J, & Murakami Y
    • Journal Title

      Genes Dev

      Volume: 26 Issue: 16 Pages: 811-1824

    • DOI

      10.1101/gad.190272.112

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsic Nucleic Acid-Binding activity of Chp1 Chromodomain Is Required for Heterochromatic Gene Silencing2012

    • Author(s)
      Ishida M, Shimojo H, Hayashi A, Kawaguchi R, Ohtani Y, Uegaki K, Nishimura Y, Nakayama J
    • Journal Title

      Mol Cell

      Volume: 47 Issue: 2 Pages: 228-241

    • DOI

      10.1016/j.molcel.2012.05.017

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two different RFC proteins, Ctf18 and RFC1 separately control PCNA-CRL4Cdt2-mediated Cdt1 proteolysis during S phase and following UV-irradiation2012

    • Author(s)
      Shiomi Y, Ishii T, Hayashi A, Shinmyozu K, Nakayama J, Sugasawa K, & Nishitani H
    • Journal Title

      Mol Cell Biol

      Volume: 32 Issue: 12 Pages: 2279-88

    • DOI

      10.1128/mcb.06506-11

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly2012

    • Author(s)
      Hayashi, A., Ishida, M., Kawaguchi, R., Urano, T., Murakami, Y., Nakayama, J-I.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: (印刷中) Issue: 16 Pages: 6159-64

    • DOI

      10.1073/pnas.1116972109

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA and epigenetic silencing : Insight from fission yeast2012

    • Author(s)
      Derek Goto
    • Journal Title

      Development, Growth & Differentiation

      Volume: 54 Issue: 1 Pages: 129-141

    • DOI

      10.1111/j.1440-169x.2011.01310.x

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex2011

    • Author(s)
      Hatanaka A, Chen B, Sun JQ, Mano Y, Funakoshi M, Kobayashi H, Ju Y, Mizutani T, Shinmyozu K, Nakayama J, Miyamoto K, Uchida H, & Oki M
    • Journal Title

      Genes Genet Syst

      Volume: 86 Pages: 305-314

    • NAID

      10030209843

    • URL

      https://www.jstage.jst.go.jp/article/ggs/86/5/86_5_305/_article

    • Related Report
      2013 Final Research Report
  • [Journal Article] Roles of fission yeast Grc3 protein in ribosomal RNA processing and heterochromatic gene silencing2011

    • Author(s)
      Jun-ichi Nakayama
    • Journal Title

      The Journal of biological chemistry

      Volume: 286 Issue: 17 Pages: 15391-402

    • DOI

      10.1074/jbc.m110.201343

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex2011

    • Author(s)
      Hatanaka A, Chen B, Sun J-Q, Mano Y, Funakoshi M, Kobayashi H, Ju Y, Mizutani T, Shimyozu K, Nakayama J, Miyamoto K, Uchida H, Oki M
    • Journal Title

      Genes & Genetic Systems

      Volume: 86 Issue: 5 Pages: 305-314

    • DOI

      10.1266/ggs.86.305

    • NAID

      10030209843

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Posttranslational modifications of HP1 regulate its function in heterochromatin formation2014

    • Author(s)
      中山潤 一
    • Organizer
      Keystone Symposia "Chromatin mechanisms and cell physiology"
    • Place of Presentation
      Oberstdorf Haus(ドイツ, オーベルストドルフ)
    • Year and Date
      2014-03-25
    • Related Report
      2013 Final Research Report
  • [Presentation] ヘテロクロマチンタンパク質HP1 による高次クロマチン構造形成の分子機構2013

    • Author(s)
      中山潤一
    • Organizer
      平成25年度遺伝研研究会
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Year and Date
      2013-10-17
    • Related Report
      2013 Final Research Report
  • [Presentation] ヘテロクロマチンタンパク質HP1 による高次クロマチン構造形成のメカニズム2013

    • Author(s)
      中山潤一
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2013-09-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Roles of chromodomain proteins in higher-order chromatin assembly2013

    • Author(s)
      中山潤一
    • Organizer
      エピジェネティクス国際シンポジウム
    • Place of Presentation
      グランディア芳泉(福井県あわら市)
    • Year and Date
      2013-09-02
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母ヘテロクロマチン形成におけるChp1 の役割2012

    • Author(s)
      中山潤一
    • Organizer
      第29回染色体ワークショップ
    • Place of Presentation
      ホテルニュー水戸屋(仙台市)
    • Year and Date
      2012-01-26
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母ヘテロクロマチン形成におけるChp1の役割2012

    • Author(s)
      中山潤一
    • Organizer
      第29回染色体ワークショップ
    • Place of Presentation
      仙台市
    • Year and Date
      2012-01-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒストン脱メチル化酵素RBP2 と相互作用する因子の探索と転写調節における役割の解明2012

    • Author(s)
      西淵剛平
    • Organizer
      第6回エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター(東京都千代田区)
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストン脱メチル化酵素RBP2 と相互作用する因子の探索と転写調節における役割の解明2012

    • Author(s)
      西淵剛平
    • Organizer
      第35回日本分子生物学会年
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母の遺伝子サイレンシングにおけるクロモドメインタンパク質の役割2012

    • Author(s)
      中山潤一
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母の遺伝子サイレンシングにおけるクロモドメインタンパク質の役割2012

    • Author(s)
      中山 潤一
    • Organizer
      第35回 日本分子生物学会年
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ヒストン脱メチル化酵素RBP2と相互作用する因子の探索と転写調節における役割の解明2012

    • Author(s)
      西淵 剛平
    • Organizer
      第35回 日本分子生物学会年
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒストン脱メチル化酵素RBP2と相互作用する因子の探索と転写調節における役割の解明2012

    • Author(s)
      西淵 剛平
    • Organizer
      第6回 エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター(東京都千代田区)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of chromodomain proteins in higher-order chromatin assembly2011

    • Author(s)
      中山潤一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-12-15
    • Related Report
      2013 Final Research Report
  • [Presentation] Roles of chromodomain proteins in higher-order chromatin assembly2011

    • Author(s)
      中山潤一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜市(招待講演)
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] 高次クロマチン構造の形成と維持の分子機構2011

    • Author(s)
      中山潤一
    • Organizer
      第62回染色体学会年会
    • Place of Presentation
      神奈川大学(神奈川県平塚市)
    • Year and Date
      2011-11-12
    • Related Report
      2013 Final Research Report
  • [Presentation] 高次クロマチン構造の形成と維持の分子機構2011

    • Author(s)
      中山潤一
    • Organizer
      第62回染色体学会年会
    • Place of Presentation
      横浜市(招待講演)
    • Year and Date
      2011-11-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] Roles of chromodomain proteins in RNAi-directed heterochromatin assembly2011

    • Author(s)
      中山潤一
    • Organizer
      第6回国際分裂酵母学会
    • Place of Presentation
      ボストン(アメリカ)
    • Year and Date
      2011-06-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Roles of chromodomain proteins in RNAi-directed heterochromatin assembly2011

    • Author(s)
      中山潤一
    • Organizer
      第6回国際分裂酵母学会
    • Place of Presentation
      ボストン(アメリカ)(招待講演)
    • Year and Date
      2011-06-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Roles of chromodomain proteins in higher-order chromatin assembly

    • Author(s)
      中山潤一
    • Organizer
      エピジェネティクス国際シンポジウム
    • Place of Presentation
      グランディア芳泉(福井県あわら市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ヘテロクロマチンタンパク質HP1による高次クロマチン構造形成のメカニズム

    • Author(s)
      中山潤一
    • Organizer
      第86回 日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ヘテロクロマチンタンパク質HP1による高次クロマチン構造形成の分子機構

    • Author(s)
      中山潤一
    • Organizer
      平成25年度遺伝研研究会
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Posttranslational modifications of HP1 regulate its function in heterochromatin formation

    • Author(s)
      中山潤一
    • Organizer
      Keystone Symposia "Chromatin mechanisms and cell physiology"
    • Place of Presentation
      Oberstdorf Haus(ドイツ、オーベストドルフ)
    • Related Report
      2013 Annual Research Report
  • [Book] エピジェネティクスキーワード事典2013

    • Author(s)
      中山潤一, 他
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report
  • [Book] エピジェネティクス2013

    • Author(s)
      中山潤一, 他
    • Publisher
      化学同人
    • Related Report
      2013 Final Research Report
  • [Book] 染色体と細胞核のダイナミクス2013

    • Author(s)
      中山潤一, 他
    • Publisher
      化学同人
    • Related Report
      2013 Final Research Report
  • [Book] ヘテロクロマチン構造の形成とサイレンシング2013

    • Author(s)
      中山潤 一
    • Publisher
      日本生化学会生化学
    • Related Report
      2013 Final Research Report
  • [Book] 染色体と細胞核のダイナミクス(第6章 ヘテロクロマチン)2013

    • Author(s)
      中山潤一
    • Total Pages
      15
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report
  • [Book] エピジェネティクス(第4章 ヒストンのアセチル化制御)2013

    • Author(s)
      中山潤一
    • Total Pages
      17
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report
  • [Book] エピジェネティクスキーワード事典(第5章ヒストンのアセチル化)2013

    • Author(s)
      中山潤一
    • Total Pages
      9
    • Publisher
      羊土社
    • Related Report
      2013 Annual Research Report
  • [Book] 実験医学2012年9月号「ヘテロクロマチン構造からみる非コードDNA と染色体」2012

    • Author(s)
      中山潤一
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report
  • [Book] ヘテロクロマチンタンパク質HP12011

    • Author(s)
      中山潤一
    • Publisher
      生体の科学
    • Related Report
      2013 Final Research Report
  • [Book] 高次クロマチン構造とノンコーディングRNA2011

    • Author(s)
      中山潤一
    • Publisher
      秀潤社, 細胞工学
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.nsc.nagoya-cu.ac.jp/~jnakayam/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-04-06   Modified: 2019-07-29  

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