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Chloroplast phylogenomics to resolve the phylogenetic relationships of major taxonomic groups in bryophytes

Research Project

Project/Area Number 23370045
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionHiroshima University

Principal Investigator

DEGUCHI Hironori  広島大学, 理学(系)研究科(研究院), 特任教授 (60117017)

Co-Investigator(Kenkyū-buntansha) YAMAGUCHI Tomio  広島大学, 大学院・理学研究科, 教授 (60244290)
TSUBOTA Hiromi  広島大学, 大学院・理学研究科, 准教授 (10332800)
SHIMAMURA Masaki  広島大学, 大学院・理学研究科, 助教 (00432708)
SAKAKIBARA Keiko  広島大学, 大学院・理学研究科, 特任助教 (90590000)
Co-Investigator(Renkei-kenkyūsha) KURABAYASHI Atsushi  広島大学, 大学院・理学研究科, 助教 (00327701)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2011: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Keywordsコケ植物 / 葉緑体ゲノム / 分子系統 / 分類 / 進化 / 系統 / 分類学
Research Abstract

Chloroplast genomes of seven mosses, two liverworts and one hornworts species were newly sequenced. Comparison of the chloroplast genomes showed that T. lepidozioides had the largest cp genome in the mosses and the gene content was almost identical to those of liverworts and hornworts. Some gene-loss events through the evolution were indicated to be effective for considering the relationships of major moss lineages.
In addition, we firstly detected linear and circular DNA molecules of chloroplast genome in a Sphagnum moss. Some larger molecules seem to be derived from multimeric conformations of single genomes. The occurrence of linear and multimeric molecules also have been known in some flowering plants. Such structural plasticity of the chloroplast genome seems to be evolutionary conserved across land plants.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (15 results)

All 2013 2012 2011

All Presentation (15 results)

  • [Presentation] セン類ヨツバゴケとアリノオヤリの交雑に関する遺伝学的解析2013

    • Author(s)
      大西弥真人・ 山口富美夫・ 嶋村正樹
    • Organizer
      日本蘚苔類学会第42回大会
    • Place of Presentation
      岡山
    • Year and Date
      2013-08-06
    • Related Report
      2013 Final Research Report
  • [Presentation] クモノスゴケの葉緑体ゲノムの構造2013

    • Author(s)
      友岡秀文・ 嶋村正樹・ 山口富美夫・ 出口博則
    • Organizer
      日本蘚苔類学会第42回大会
    • Place of Presentation
      岡山
    • Year and Date
      2013-08-06
    • Related Report
      2013 Final Research Report
  • [Presentation] クモノスゴケの葉緑体ゲノムの構造2013

    • Author(s)
      友岡秀文・嶋村正樹・山口富美夫・出口博則
    • Organizer
      日本蘚苔類学会第42回大会
    • Related Report
      2013 Annual Research Report
  • [Presentation] セン類ヨツバゴケとアリノオヤリの交雑に関する遺伝学的解析2013

    • Author(s)
      大西弥真人・山口富美夫・嶋村正樹
    • Organizer
      日本蘚苔類学会第42回大会
    • Related Report
      2013 Annual Research Report
  • [Presentation] セン類イシヅチゴケの葉緑体ゲノム構造2012

    • Author(s)
      定光淳・ 嶋村正樹・ 榊原恵子・ 山口登美夫・ 出口博則
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Year and Date
      2012-09-16
    • Related Report
      2013 Final Research Report
  • [Presentation] The complete chloroplast genome sequences of four early divergent mosses : Takakia lepidozioides (Takakiopsida) , Sphagnum palustre (Sphagnopsida) , Andreaea nivalis (Andreaeopsida) and Oedipodium griffithianum (Oedipodiopsida)2012

    • Author(s)
      Sadamitsu, A. , Kosugi, I. , Sakakibara, K. , Tsubota, H. , Yamaguchi, T. , Deguchi, H. & Shimamura, M
    • Organizer
      Third International Symposium on Molecular Systematics of Bryophytes
    • Place of Presentation
      NY, USA
    • Year and Date
      2012-06-16
    • Related Report
      2013 Final Research Report
  • [Presentation] 葉緑体遺伝子大規模データセットに基づくセン類の分子系統解析2012

    • Author(s)
      定光淳・ 坪田博美・ 嶋村正樹・ 榊原恵子・ 山口登美夫・ 出口博則
    • Organizer
      日本植物分類学会第11回大会
    • Place of Presentation
      大阪
    • Year and Date
      2012-03-24
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] セン類イシヅチゴケの葉緑体ゲノム構造2012

    • Author(s)
      定光淳、嶋村正樹、榊原恵子、坪田博美、山口富美夫、出口博則
    • Organizer
      日本植物学会第76回大会
    • Related Report
      2012 Annual Research Report
  • [Presentation] The complete chloroplast genome sequences of four early divergent mosses: Takakia lepidozioides (Takakiopsida), Sphagnum palustre (Sphagnopsida), Andreaea nivalis (Andreaeopsida) and Oedipodium griffithianum (Oedpodiopsida).2012

    • Author(s)
      Sadamitsu, A., Kosugi, I., Sakakibara, K., Tsubota, H., Yamaguchi, T., Deguchi, H. & Shimamura, M.
    • Organizer
      moss 2012
    • Related Report
      2012 Annual Research Report
  • [Presentation] 葉緑体ゲノム構造からみたコケ植物セン類の系統関係2011

    • Author(s)
      定光淳・ 小杉一誠・ 嶋村正樹・ 山口富美夫・ 出口博則
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京
    • Year and Date
      2011-08-17
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] コケ植物セン類の葉緑体ゲノム構造の多様性2011

    • Author(s)
      小杉一誠・ 定光淳・ 嶋村正樹・ 山口富美夫・ 出口博則
    • Organizer
      日本蘚苔類学会第40回大会
    • Place of Presentation
      奈良
    • Year and Date
      2011-08-09
    • Related Report
      2013 Final Research Report
  • [Presentation] コケ植物セン類の葉緑体ゲノム構造の多様性2011

    • Author(s)
      小杉一誠・定光淳・嶋村正樹・山口富美夫・出口博則
    • Organizer
      日本蘚苔類学会第40回大会
    • Place of Presentation
      奈良県川上村
    • Year and Date
      2011-08-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] Phylogenetic position of the Takakiopsida (Bryophyta) inffered from comparative chloroplast genomics2011

    • Author(s)
      Sadamitsu, A., Shimamura, M., Yamaguchi, T., Deguchi, H.
    • Organizer
      XVIII International Botanical Congress
    • Place of Presentation
      メルボルン,オーストラリア
    • Year and Date
      2011-07-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] Chloroplast genome sequencing of the moss, Andreaea nivalis2011

    • Author(s)
      Kosugi, I., Shimamura, M., Yamaguchi, T., Deguchi, H.
    • Organizer
      XVIII International Botanical Congress
    • Place of Presentation
      メルボルン,オーストラリア
    • Year and Date
      2011-07-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] Chloroplast genome structure of a primitive moss, Sphagnum palustre (Bryophyta) : DNA sequencing and direct observation of single molecules2011

    • Author(s)
      Shimamura, M., Sadamitsu, A., Yamaguchi, T., Deguchi, H.
    • Organizer
      XVIII International Botanical Congress
    • Place of Presentation
      メルボルン,オーストラリア
    • Year and Date
      2011-07-26
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-12-27  

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