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Development of a universal organ segmentation method based on similar image retrieval and machine-learning by using a large database of medical images

Research Project

Project/Area Number 23500118
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Media informatics/Database
Research InstitutionGifu University

Principal Investigator

ZHOU Xiangrong  岐阜大学, 医学(系)研究科(研究院), 助教 (00359738)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2013: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsデータベース / 情報システム / 学習と知識獲得 / 画像情報処理 / 医用・生体画像 / 体幹部CT画像 / 臓器の自動抽出 / 医用画像データベース / 機械学習 / 臓器領域の自動抽出 / 画像データベース / 解剖構造の理解 / 類似画像検索 / 国際情報交換「米国」 / 解剖学的構造 / 計算機支援診断
Research Abstract

The aim of this research (one procedure solves different organ segmentation problems on medical images) was almost realized. Our research policy for procedure design by using (machine learning and data driven based approach instead of transferring the human experience to computer program directly) was proved to be efficient to solve organ segmentation problems on medical images. We reached a conclusion that (image processing procedures such as organ segmentation can be greatly simplified under the supporting of a large database and well preparations). The algorithm that proposed to (accomplish the automatic organ segmentation within several tens of seconds) was implemented. We evaluated the performance of the algorithm and confirmed that the major organ such as kidney, spleen, and so on can be segmented automatically within one minute from the torso CT images.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (51 results)

All 2014 2013 2012 2011 Other

All Journal Article (18 results) (of which Peer Reviewed: 14 results,  Acknowledgement Compliant: 1 results) Presentation (24 results) Book (5 results) Remarks (4 results)

  • [Journal Article] Development and evaluation of statistical shape modeling for principal inner organs on torso CT images2014

    • Author(s)
      Xiangrong Zhou
    • Journal Title

      Radiological Physics and Technology

      Volume: 7 Issue: 2 Pages: 1-7

    • DOI

      10.1007/s12194-014-0261-6

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A universal approach for automatic organ segmentations on 3D CT images based on organ localization and 3D GrabCut2014

    • Author(s)
      X.Zhou, T.Ito, X.Zhou, H.Chen, T.Hara, R.Yokoyama, M.Kanematsu, H.Hoshi, and H.Fujita
    • Journal Title

      Proc. of SPIE Medical Imaging 2014: Computer-Aided Diagnosis

      Volume: 9035 Pages: 90352V-90352V

    • DOI

      10.1117/12.2043507

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Automatic organ localizations on 3D CT images by using majority-voting of multiple 2D detections based on local binary patterns and Haar-like features2013

    • Author(s)
      X.Zhou, A.Yamaguti, X.Zhou, T.Hara, R.Yokoyam, M.Kanematsu, and H.Fujita
    • Journal Title

      Proc. of SPIE Medical Imaging 2013: Computer-Aided Diagnosis

      Volume: 8670 Pages: 86703A-86703A

    • DOI

      10.1117/12.2007466

    • Related Report
      2013 Annual Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Pulmonary emphysema classification based on an improved texton learning model by sparse representation2013

    • Author(s)
      M.Zhang, X.Zhou, H.Chen, C.Muramatsu, T.Hara, R.Yokoyama, M.Kanematsu, and H.Fujita
    • Journal Title

      Proc. of SPIE Medical Imaging 2013: Computer-Aided Diagnosis

      Volume: 8670 Pages: 86700F-86700F

    • DOI

      10.1117/12.2007934

    • Related Report
      2013 Annual Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Model-Based Approach to Recognize the Rectus Abdominis Muscle in CT Images2013

    • Author(s)
      N.Kamiya, X.Zhou, H.Chen, C.Muramatsu, T.Hara, and H.Fujita
    • Journal Title

      IEICE Transactions on Information and Systems

      Volume: E96.D Issue: 4 Pages: 869-871

    • DOI

      10.1587/transinf.E96.D.869

    • NAID

      10031182852

    • ISSN
      0916-8532, 1745-1361
    • Related Report
      2013 Annual Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Particle system based adaptive sampling on spherical parameter space to improve the MDL method for construction of statistical shape models2013

    • Author(s)
      R.Xu, X.Zhou, Y.Hirano, R.Tachibana, T.Hara, S.Kido, and H.Fujita
    • Journal Title

      Computational and Mathematical Methods in Medicine

      Volume: 2013年度 Pages: 196259-196268

    • DOI

      10.1155/2013/196259

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Age-related changes in trabecular and cortical bone microstructure, International Journal of Endocrinology2013

    • Author(s)
      H.Chen, X.Zhou, H.Fujita, M.Onozuka, and K.Kubo
    • Journal Title

      International Journal of Endocrinology

      Volume: 2013 Pages: 1-9

    • DOI

      10.1155/2013/213234

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Local binary pattern statistics feature for reduced reference image quality assessment2013

    • Author(s)
      M.Zhang, X.Mou, H.Fujita, L.Zhang, X.Zhou, and W.Xue
    • Journal Title

      Proc. of IS&T/SPIE Symposium on Electronic Imaging 2013

      Volume: 8660 Pages: 86600L-86600L

    • DOI

      10.1117/12.2008646

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 歯科パノラマX線写真における左右差分像技術を用いた上顎洞の異常自動検出法2013

    • Author(s)
      原 武史,田上元基,森進太郎,金田 隆,勝又明敏,周 向栄,村松千左子,藤田広志
    • Journal Title

      電子情報通信学会論文誌D

      Volume: J96-D (4) Pages: 885-891

    • NAID

      110009596336

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Automatic localization of solid organs on 3D CT images by a collaborative majority voting decision based on ensemble learning2012

    • Author(s)
      X.Zhou, S.Wang, H.Chen, T.Hara, R.Yokoyama, M.Kanematsu, and H.Fujita
    • Journal Title

      Computerized Medical Imaging and Graphics

      Volume: Vol.36, No.4 Issue: 4 Pages: 304-313

    • DOI

      10.1016/j.compmedimag.2011.12.004

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Automatic organ segmentation on torso CT images by using content-based image retrieval2012

    • Author(s)
      Xiangrong Zhou, Atsuto Watanabe, Xinxin Zhou, Takeshi Hara,Ryujiro Yokoyama, Masayuki Kanematsu, Hiroshi Fujita
    • Journal Title

      Proc. SPIE Medical Imaging

      Volume: 8314 Pages: 83143E-83143E

    • DOI

      10.1117/12.912359

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Automated segmentation of psoas major muscle in X-ray CT images by use of a shape model : Preliminary study2012

    • Author(s)
      N.Kamiya, X.Zhou, H.Chen, C.Muramatsu, T.Hara, R.Yokoyama, M.Kanematsu, H.Hoshi, H.Fujita
    • Journal Title

      Radiological Physics and Technology

      Volume: 5 Issue: 1 Pages: 5-14

    • DOI

      10.1007/s12194-011-0127-0

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] An application of the texton learning model via sparse representation on pulmonary emphysema classification2012

    • Author(s)
      M.Zhang, X.Zhou, H.Chen, C.Muramatsu, T.Hara, R.Yokoyama, M.Kanematsu, H.Fujita
    • Journal Title

      Proc.of SPIE medical imaging

      Volume: 8315 Pages: 831534-831534

    • DOI

      10.1117/12.912454

    • Related Report
      2011 Research-status Report
  • [Journal Article] Automated scheme for measuring mandibular cortical thickness on dental panoramic radiographs for osteoporosis screening2012

    • Author(s)
      T.Matsumoto, T.Hayashi, T.Hara, A.Katsumata, C.Muramatsu, X.Zhou, Y.Iida, M.Matsuoka, K.Katagi, H.Fujita
    • Journal Title

      Proc.of SPIE medical imaging

      Volume: 8315 Pages: 83152L-83152L

    • DOI

      10.1117/12.912309

    • Related Report
      2011 Research-status Report
  • [Journal Article] A new screening pathway for identifying asymptomatic patients using dental panoramic radiographs2012

    • Author(s)
      T.Hayashi, T.Matsumoto, T.Sawagashira, M.Tagami, A.Katsumata, Y.Hayashi, C.Muramatsu, X.Zhou, Y.Iida, M.Matsuoka, K.Katagi, H.Fujita
    • Journal Title

      Proc. SPIE Medical Imaging

      Volume: 8315 Pages: 83152K-83152K

    • DOI

      10.1117/12.911791

    • Related Report
      2011 Research-status Report
  • [Journal Article] User-friendly tools on hand-held devices for observer performance study2012

    • Author(s)
      T.Matsumoto, T.Hara, J.Shiraishi, H.Abe, X.Zhou, H.Fujita
    • Journal Title

      Proc. SPIE Medical Imaging

      Volume: 8318 Pages: 83181J-83181J

    • DOI

      10.1117/12.912307

    • Related Report
      2011 Research-status Report
  • [Journal Article] A fast and fully automatic method for cerebrovascular segmentation on time-of-flight (TOF) MRA image2011

    • Author(s)
      X.Gao, Y.Uchiyama, X.Zhou, T.Hara, T.Asano, H.Fujita
    • Journal Title

      Journal of Digital Imaging

      Volume: 24 Issue: 4 Pages: 609-625

    • DOI

      10.1007/s10278-010-9326-1

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Automated segmentation of recuts abdominis muscle using shape model in X-ray CT images2011

    • Author(s)
      N.Kamiya, X.Zhou, H.Chen, C.Muramatsu, T.Hara, R.Yokoyama, M.Kanematsu, H.Hoshi, H.Fujita
    • Journal Title

      Proc.of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society

      Volume: 1 Pages: 7993-7996

    • DOI

      10.1109/iembs.2011.6091971

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] A universal approach for automatic organ segmentations on 3D CT images based on organ localization and 3D grabcut2014

    • Author(s)
      X.Zhou, K.Ito, X.Zhou, T.Hara, R.Yokoyam, M.Kanematsu, and H.Fujita
    • Organizer
      Proc. of SPIE Medical Imaging 2014 : Computer-Aided Diagnosis
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] 臓器位置検出とGrabCutによる3次元CT画像からの複数臓器領域の自動検出2014

    • Author(s)
      伊藤隆晃,周 向栄,原 武史,姜 慧研,横山龍二郎,陳 華岳,兼松雅之,星 博昭,藤田広志
    • Organizer
      電子情報通信学会 医用画像研究会
    • Place of Presentation
      沖縄県 那覇市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 機械学習に基づく大規模なCTデータベースからの複数臓器位置の自動検出と性能評価2014

    • Author(s)
      守田翔一,周 向栄,陳 華岳,原 武史,姜 慧研,横山龍二郎,兼松雅之,星 博昭,藤田広志
    • Organizer
      電子情報通信学会 医用画像研究会
    • Place of Presentation
      沖縄県 那覇市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Automatic organ localizations on 3D CT images by using majority-voting of multiple 2D detections based on local binary patterns and Haar-like features2013

    • Author(s)
      X.Zhou, A.Yamaguti, X.Zhou, T.Hara, R.Yokoyam, M.Kanematsu, and H.Fujita
    • Organizer
      Proc. of SPIE Medical Imaging 2013 : Computer-Aided Diagnosis
    • Place of Presentation
      Orlando, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] Automatic Multi-organ Localizations on 3D CT Images by Using Machine-learning Approach Based on a Large Dataset2013

    • Author(s)
      X.Zhou, H.Chen, T.Hara, R.Yokoyama, M.Kanematsu, and H.Fujita
    • Organizer
      The Radiological Society of North America (RSNA2013)
    • Place of Presentation
      Chicago, US
    • Related Report
      2013 Annual Research Report
  • [Presentation] CT画像における体幹部の解剖学的構造のデータベース構築法に関する考察2013

    • Author(s)
      山口昌太郎, 周 向栄, 陳 華岳, 原 武史, 姜 慧研, 横山龍二郎, 兼松雅之, 星 博昭, 藤田広志
    • Organizer
      電子情報通信学会医用画像研究会技術報告
    • Place of Presentation
      那覇
    • Related Report
      2012 Research-status Report
  • [Presentation] 皮下脂肪領域の除去によるCT画像の仮想展開と腹直筋領域の自動認識2013

    • Author(s)
      神谷直希, 村松千左子, 周 向栄, 陳 華岳, 原 武史, 星 博昭, 藤田広志
    • Organizer
      電子情報通信学会医用画像研究会技術報告
    • Place of Presentation
      那覇
    • Related Report
      2012 Research-status Report
  • [Presentation] モルフォロジー演算を用いた歯科パノラマX線写真上の頸動脈石灰化の自動検出法2013

    • Author(s)
      澤頭 毅, 原 武史, 勝又明敏, 村松千左子, 周 向栄, 飯田幸弘, 脇阪 孝, 松岡正登, 藤田広志
    • Organizer
      電子情報通信学会技術報告
    • Place of Presentation
      那覇
    • Related Report
      2012 Research-status Report
  • [Presentation] A01-3 Model Construction for Computational Anatomy: Progress Overview FY20122013

    • Author(s)
      H.Fujita, T.Hara, X.Zhou, C.Muramatsu, N.Kamiya, M.Zhang, D.Fukuoka, Y.Hatanaka, T.Matsubara, A.Teramoto, Y.Uchiyama, H.Chen, and H.Hoshi
    • Organizer
      Proc. of the Fourth International Symposium on the Project “Computational Anatomy
    • Place of Presentation
      大阪大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Automatic organ segmentation on torso CT images by using content-based image retrieval2012

    • Author(s)
      X.Zhou, A.Watanabe, X.Zhou, T.Hara, R.Yokoyama, M.Kanematsu, and H.Fujita
    • Organizer
      Proc. of SPIE Medical Imaging
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] 二肢強制選択法によるステレオシンチグラムにおける集積位置の距離弁別能の測定2012

    • Author(s)
      原 武史,山崎雄章,片渕哲朗,小林龍徳,松迫正樹,村松千左子,周 向栄,藤田広志
    • Organizer
      電子情報通信学会医用画像研究会技術研究報告
    • Place of Presentation
      山口大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Automatic organs segmentation from non-contrast CT images by using content-based image retrieval2012

    • Author(s)
      A.Watanabe, X.Zhou, H. Chen, T.Hara, R.Yokoyama, M.Kanematsu, H.Hoshi, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Probabilistic atlas construction and performance evaluation of multiple organs in X-ray torso CT Images2012

    • Author(s)
      J.Sawada, T.Hayashi, X.Zhou, H.Chen, T.Hara, H.Jiang, R. Yokoyama, M.Kanematsu, H.Hoshi, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Construction of the statistical shape models and its performance evaluation for the 3D torso organs using the MDL method2012

    • Author(s)
      S.Yamaguchi, X.Zhou, R.Xu, T.Hara, R.Yokoyama, M.Kanematsu, H. Hoshi, S.Kido, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Improvement of MDL method by adaptive sampling on spherical parameter space2012

    • Author(s)
      R.Xu, X.Zhou, Y.Hirano, R.Tachibana, S.Kido, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Analysis of temporal changes and anatomical Standardized Uptake Value model on torso FDG-PET scans2012

    • Author(s)
      T.Suzuki, Y.Shimizu, T.Hara, T.Kobayashi, X.Zhou, S.Ito, T.Katafuchi, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Evaluation of anatomical registration method for torso FDG-PET scans2012

    • Author(s)
      Y.Shimizu, T.Suzuki, T.Kobayashi, T.Hara, X.Zhou, S.Itoh, S. Kumita, K.Ishihara, T.Katafuchi, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Osteoporosis screening by use of automated scheme for measuring mandibular cortical thickness on dental panoramic radiographs2012

    • Author(s)
      T.Matsumoto, T.Hayashi, T.Hara, A.Katsumata, C.Muramatsu, X.Zhou, Y.Iida, M.Matsuoka, K.Katagi, E.Ariji, S.Mori, T.Kaneda, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Development of automated analysis for early signs of cerebral infarctions on head X-ray CT images in emergency medical care2012

    • Author(s)
      K.Oshima, T.Hara, X.Zhou, K.Sakashita, C.Muramatsu, H.Fujita
    • Organizer
      メディカルイメージング連合フォーラム
    • Place of Presentation
      沖縄
    • Related Report
      2011 Research-status Report
  • [Presentation] Automatic method for measuring mandibular cortical thickness by using active contour model on dental panoramic radiographs2011

    • Author(s)
      T.Matsumto, T.Hayashi, T.hara, A.Katsumata, C.Muramatsu, X.Zhou, Y.Iida, M.Matsuoka, K.Katagi, E.Ariji, S.Mori, T.Kaneda, H.Fujita
    • Organizer
      医用画像研究会
    • Place of Presentation
      北海道
    • Related Report
      2011 Research-status Report
  • [Presentation] Automatic Organ Localization in X-ray Torso CT Images Using Machine-learning Approach2011

    • Author(s)
      Xiangrong Zhou, Takeshi Hara , Huayue Chen, Ryujiro Yokoyama, Masayuki Kanematsu, Hiroshi Fujita
    • Organizer
      第97回北米放射線学会
    • Place of Presentation
      シカゴ,アメリカ
    • Related Report
      2011 Research-status Report
  • [Presentation] Quantitative Staging the Hepatic Fibrosis: Computer-aided Diagnosis by Shape, Texture, Volume, and Elasticity Analysis2011

    • Author(s)
      Xuejun Zhang, Satoshi Goshima, Xiangrong Zhou, Takeshi. Hara , Masayuki Kanematsu, Hiroshi Fujita
    • Organizer
      第97回北米放射線学会
    • Place of Presentation
      シカゴ,アメリカ
    • Related Report
      2011 Research-status Report
  • [Presentation] Methodology of Statistical Image Analysis by Using Normal Cases for Torso FDG-PET Images2011

    • Author(s)
      Satoshi Ito, Takeshi Hara, Tetsuro Katafuchi, Takuya Matsumoto, Tokifumi Suzuki, Tatsunori Kobayashi, Xiangrong Zhou, Hiroshi Fujita
    • Organizer
      第97回北米放射線学会
    • Place of Presentation
      シカゴ,アメリカ
    • Related Report
      2011 Research-status Report
  • [Presentation] Effect of Screening for Systemic Diseases Using Panoramic Radiographs: The New Role of Preventive Care in Dentistry2011

    • Author(s)
      H. Fujita, T. Hayashi, T. Sawagashira, T. Matsumoto, T. Hara, A. Katsumata, Y. Hayashi, M. Tagami, C. Muramatsu, X. Zhou, Y. Iida, M. Matsuoka, K. Katagi
    • Organizer
      第97回北米放射線学会
    • Place of Presentation
      シカゴ,アメリカ
    • Related Report
      2011 Research-status Report
  • [Book] Computational Intelligence in Biomedical Imaging, ed. by K.Suzuki2014

    • Author(s)
      T.Hayashi, H.Chen, K.Miyamoto, X.Zhou, T.Hara, and H.Fujita
    • Total Pages
      25
    • Publisher
      Springer, New York
    • Related Report
      2013 Annual Research Report
  • [Book] Automatic organ localization on X-ray CT images by using ensemble-learning techniques, in Machine Learning in Computer-Aided Diagnosis : Medical Imaging Intelligence and Analysis, ed. by K.Suzuki2012

    • Author(s)
      X.Zhou and H.Fujita
    • Total Pages
      500
    • Publisher
      IGI Global, USA
    • Related Report
      2013 Final Research Report
  • [Book] 医用画像ハンドブック, 2.3.4 距離変換2012

    • Author(s)
      周向栄(分担執筆)
    • Total Pages
      1571
    • Publisher
      日本医用画像工学会, 東京
    • Related Report
      2013 Final Research Report
  • [Book] Automatic organ localization on X-ray CT images by using ensemble-learning techniques, Chapter 19 in Machine Learning in Computer-Aided Diagnosis: Medical Imaging Intelligence and Analysis2012

    • Author(s)
      Xiangrong Zhou, Hiroshi Fujita
    • Total Pages
      16
    • Publisher
      IGI Global
    • Related Report
      2011 Research-status Report
  • [Book] Sophisticated Imaging Technology in the Assessment of Osteoporosis Risk, Chapter 10 in Osteoporosis2012

    • Author(s)
      Huayue Chen, Tatsuro Hayashi, Xiangrong Zhou, Hiroshi Fujita, Minoru Onozuka, Kin-ya Kubo
    • Total Pages
      14
    • Publisher
      InTech
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://www.fjt.info.gifu-u.ac.jp

    • Related Report
      2013 Final Research Report
  • [Remarks] 岐阜大学藤田研究室

    • URL

      http://www.fjt.info.gifu-u.ac.jp/publication/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 藤田研究室

    • Related Report
      2012 Research-status Report
  • [Remarks] http//www.fjt.info.gifu-u.ac.jp

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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