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Elucidation of repair mechanism for oxidative damage in budding yeast based on genome-wide phenotype analyses

Research Project

Project/Area Number 23510250
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied genomics
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

ANDO Akira  独立行政法人農業・食品産業技術総合研究機構, 野菜茶業研究所野菜病害虫・品質研究領域, 主任研究員 (50414496)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords酸化ストレス / パン酵母 / 遺伝子破壊株セット / 網羅的表現型解析 / 出芽酵母
Research Abstract

To identify gene functions involved in repair mechanism for oxidative damage in budding yeast Saccharomyces cerevisiae,we conducted genome-wide phenotype analyses using the complete collection of mutant strains deleted for each of all non-essential genes of budding yeast and the Decreased Abundance by mRNA Perturbation (DAmP) Yeast Library. The results suggest that genes related to RNA polymerases and the Ubiquitin-Proteasome system, as well as vacuolar acidification that were identified to be critical for tolerance to oxidative stress in our previous study, play important roles in tolerance to oxidative stress. We constructed a systematic library for comprehensive overexpression screens in S. cerevisiae using the systematic collection of yeast genome in a high-copy vector. Using this overexpression library, we screened strains that showed resistance or sensitivity to oxidative stress.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (24 results)

All 2013 2012 2011 Other

All Journal Article (10 results) (of which Peer Reviewed: 6 results) Presentation (14 results)

  • [Journal Article] パンづくりを支える微生物機能-酵母と乳酸菌を中心にして-2013

    • Author(s)
      島純、小松崎典子、吉田綾子、安藤聡、中村敏英
    • Journal Title

      生物工学会誌

      Volume: 91 Pages: 618-620

    • Related Report
      2013 Final Research Report
  • [Journal Article] パンづくりを支える微生物機能-酵母と乳酸菌を中心にして-2013

    • Author(s)
      島純、小松崎典子、吉田綾子、安藤聡、中村敏英
    • Journal Title

      生物工学会誌

      Volume: 91 Pages: 618-620

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 平成21年産市販パン酵母の品質について2013

    • Author(s)
      安藤聡、中村敏英、島純、皆川あけみ
    • Journal Title

      日本イースト工業会技術懇談会報告

      Volume: 80

    • Related Report
      2012 Research-status Report
  • [Journal Article] Overexpression of vacuolar H+-ATPase-related genes in bottom-fermenting yeast enhances ethanol tolerance and fermentation rates during high-gravity fermentation2012

    • Author(s)
      Hasegawa S, Ogata T, Tanaka K, Ando A, Takagai H, Shima J
    • Journal Title

      Journal of the Institute of Brewing

      Volume: 118 Issue: 2 Pages: 179-185

    • DOI

      10.1002/jib.32

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Ethanol production by repeated-batch simultaneous saccharification and fermentation (SSF) of alkalitreated rice straw using immobilized Saccharomyces cerevisiae cells2012

    • Author(s)
      Watanabe I, Miyata N, Ando A, Shiroma R, Tokuyasu K, Nakamura T
    • Journal Title

      Bioresource Technology

      Volume: 123 Pages: 695-698

    • DOI

      10.1016/j.biortech.2012.07.052

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification of an acetate-tolerant strain of Saccharomyces cerevisiae and characterization by gene expression analysis2012

    • Author(s)
      Haitani Y, Tanaka K, Yamamoto M, Nakamura T, Ando A, Ogawa J, Shima J
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 114 Pages: 648-651

    • NAID

      110009578160

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of Candida sp. NY7122, a novel pentose-fermenting soil yeast2012

    • Author(s)
      Watanabe I, Ando A and Nakamura T
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: 39 Pages: 307-315

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of Candida sp. NY7122, a novel pentose-fermenting soil yeast.2012

    • Author(s)
      Watanabe I, Ando A and Nakamura T
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: 39 Issue: 2 Pages: 307-315

    • DOI

      10.1007/s10295-011-1033-5

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 優れた発酵特性を有する酵母の探索2011

    • Author(s)
      安藤聡、中村敏英
    • Journal Title

      微生物遺伝資源探索収集調査報告書

      Volume: 24 Pages: 51-56

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 環境ストレス耐性に着目したバイオエタノール生産酵母開発の試み2011

    • Author(s)
      島純、安藤聡、中村敏英
    • Journal Title

      生物工学会誌

      Volume: 89 Pages: 536-538

    • NAID

      110008750614

    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] 産業プロセスに有用な酢酸ストレス耐性酵母の同定と耐性メカニズムの解析2013

    • Author(s)
      田中晃一、灰谷豊、吉山洋子、山本まみ、中村敏英、安藤聡、小川順、島純
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学
    • Year and Date
      2013-03-26
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 酸化ストレス耐性に関与する酵母必須遺伝子群の網羅的探索2012

    • Author(s)
      岡田奈津実、安藤聡、小川順、島純
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2012-10-26
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 液胞プロトンポンプ関連遺伝子の過剰発現によりビール酵母はエタノールストレス耐性を獲得する2012

    • Author(s)
      長谷川園子、尾形智夫、田中晃一、安藤聡、小川順、高木博史、島純
    • Organizer
      第4回日本醸造学会若手シンポジウム
    • Place of Presentation
      北とぴあ(東京都北区)
    • Year and Date
      2012-09-27
    • Related Report
      2013 Final Research Report
  • [Presentation] γ-アミノ酪酸資化欠損パン酵母変異株を用いたパン生地発酵2012

    • Author(s)
      安藤聡、中村敏英
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Year and Date
      2012-03-24
    • Related Report
      2013 Final Research Report
  • [Presentation] 遺伝子発現解析とエタノール発酵能に基づく酸耐性酵母の特性評価2012

    • Author(s)
      灰谷豊、中村敏英、安藤聡、小川順、島純
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Year and Date
      2012-03-23
    • Related Report
      2013 Final Research Report
  • [Presentation] 出芽酵母の高温耐性能に関与する遺伝子の探索2012

    • Author(s)
      中村敏英、山本まみ、安藤聡、渡邉樹、島純
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Year and Date
      2012-03-23
    • Related Report
      2013 Final Research Report
  • [Presentation] γ-アミノ酪酸資化欠損パン酵母変異株を用いたパン生地発酵2012

    • Author(s)
      安藤聡、中村敏英
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] 雪室保存の野沢菜漬けから分離した低温増殖性乳酸菌の特性2012

    • Author(s)
      西脇俊和、下條明、安藤聡
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] 遺伝子発現解析とエタノール発酵能に基づく酸耐性酵母の特性評価2012

    • Author(s)
      灰谷豊、中村敏英、安藤聡、小川順、島純
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] 出芽酵母の高温耐性能に関与する遺伝子の探索2012

    • Author(s)
      中村敏英、山本まみ、安藤聡、渡邉樹、島純
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] Improvement of ethanol tolerance by overexpression of genes involved in yeast vacuolar ATPases (V-ATPase) function2011

    • Author(s)
      長谷川園子、安藤聡、小川順、高木博史、島純
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-16
    • Related Report
      2013 Final Research Report
  • [Presentation] Improvement of ethanol tolerance by overexpression of genes involved in yeast vacuolar ATPases (V-ATPase) function2011

    • Author(s)
      長谷川園子、安藤聡、小川順、高木博史、島純
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] 新規アラビノース発酵性酵母の分離およびそのエタノール生産能の評価2011

    • Author(s)
      渡邉樹、安藤聡、中村敏英
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京農工大学(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] 液胞プロトンポンプ関連遺伝子の過剰発現によりビール酵母はエタノールストレス耐性を獲得する

    • Author(s)
      長谷川園子、尾形智夫、田中晃一、安藤聡、小川順、高木博史、島純
    • Organizer
      第4回日本醸造学会若手シンポジウム
    • Place of Presentation
      北とぴあ(東京都北区)
    • Related Report
      2012 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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