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Study on chemical biology for protein SUMOylation

Research Project

Project/Area Number 23510288
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemical biology
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

ITO Akihiro  独立行政法人理化学研究所, 吉田化学遺伝学研究室, 専任研究員 (40391859)

Co-Investigator(Renkei-kenkyūsha) HIRAI Go  独立行政法人理化学研究所, 袖岡有機合成化学研究室, 専任研究員 (50359551)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsSUMO / 阻害剤 / 抗がん剤 / 脱SUMO化酵素 / SUMOylation / がん / ケミカルバイオロジー
Research Abstract

The aim of this study is to elucidate roles of protein SUMOylation in carcinogenesis using a chemical biology approach. Using an in situ cell-based SUMOylation assay system, we identified several small molecule inhibitors of SUMOylation including spectomycin B1 as SUMO E2 (Ubc9) inhibitor. Our findings suggested that Ubc9 inhibitors such as spectomycin B1 have a potential as a therapeutic agent against ERalpha-dependent breast cancers. Furthermore, we identified a novel deSUMOylatuon enzyme, SENP1, inhibitor by an in situ deSUMOylation assay. We found that SENP1 inhibitor reduced the activity of HIF-1alpha,an important transcriptional factor for cancer survival under hypoxia microenvironment. In addition, we succeeded in developing novel assay systems for detecting non-covalent interactions between SUMO and SIM using a split-luciferase complementation and identified first small molecules that inhibit SUMO-dependent protein-protein interactions.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (29 results)

All 2014 2013 2012 2011 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 1 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Identification of 1,2,5-Oxadiazoles as a New Class of SENP2 Inhibitors Using Structure Based Virtual Screening.2014

    • Author(s)
      Kumar A, Ito A, Takemoto M, Yoshida M, Zhang KY.
    • Journal Title

      J. Chem. Inf. Model.

      Volume: 54 Issue: 3 Pages: 870-880

    • DOI

      10.1021/ci4007134

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Inhibition of protein SUMOylation by davidiin, an ellagitannin from Davidia involucrata2014

    • Author(s)
      M. Takemoto, Y. Kawamura, M. Hirohama, Y. Yamaguchi, H. Handa, H. Saitoh, Y. Nakao, M. Kawada, K. Khalid, H. Koshino, K. Kimura, A. Ito, M. Yoshida
    • Journal Title

      J. Antibiot. (Tokyo)

      Volume: 67 Issue: 4 Pages: 335-338

    • DOI

      10.1038/ja.2013.142

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Assay methods for small ubiquitin-like modifier (SUMO)-SUMO-interacting motif (SIM) interactions in vivo and in vitro using a split-luciferase complementation system2014

    • Author(s)
      Hirohama M, Voet AR, Ozawa T, Saitoh H, Nakao Y, Zhang KY, Ito A, Yoshida M.
    • Journal Title

      Anal Biochem.

      Volume: 448 Pages: 92-4

    • DOI

      10.1016/j.ab.2013.12.009

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of small molecule inhibitors targeting the SUMO-SIM interaction using a protein interface consensus approach2014

    • Author(s)
      Voet AR, Ito A, Hirohama M, Matsuoka S, Tochiode N, Kigawa T, Yoshida M, Zhang KY.
    • Journal Title

      MedChemComm

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of small molecule inhibitors targeting the SUMOSIM interaction using a protein interface consensus approach2013

    • Author(s)
      Voet A#, Ito A#, Hirohama M, Yoshida M, Zhang KY. #equally contributed
    • Journal Title

      Medchemcomm.

      Volume: in press

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Spectomycin B1 as a novel SUMOylation inhibitor that directly binds to SUMO E2.2013

    • Author(s)
      Hirohama M, Kumar A, Fukuda I, Matsuoka S, Igarashi Y, Saitoh H, Takagi M, Shin-ya K, Honda K, Kondoh Y, Saito T, Nakao Y, Osada H, Zhang KY, Yoshida M, Ito A
    • Journal Title

      ACS Chem Biol

      Volume: 8 Issue: 12 Pages: 2635-2642

    • DOI

      10.1021/cb400630z

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of quinazolinyloxy biaryl urea as a new class of SUMO activating enzyme 1 inhibitors.2013

    • Author(s)
      Kumar A, Ito A, Hirohama M, Yoshida M, Zhang KY.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 23 Issue: 18 Pages: 5145-5149

    • DOI

      10.1016/j.bmcl.2013.07.022

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of sumoylation activating enzyme 1 inhibitors by structure-based virtual screening.2013

    • Author(s)
      Kumar A, Ito A, Hirohama M, Yoshida M, Zhang KY.
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 53 Issue: 4 Pages: 809-820

    • DOI

      10.1021/ci300618e

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] タンパク質 SUMO化を標的とした化合物の同定とその抗がん活性2014

    • Author(s)
      伊藤昭博
    • Organizer
      新学術領域天然物ケミカルバイオロジー地区ミニシンポジウム「化学と生物学の打開策次世代天然物ケミカルバイオロジー研究の開拓へ」
    • Place of Presentation
      和光
    • Year and Date
      2014-03-01
    • Related Report
      2013 Final Research Report
  • [Presentation] タンパク質 SUMO化を標的とした阻害剤の探索 -タンパク質SUMO化酵素阻害剤および SUMO-SIM結合阻害剤について -2014

    • Author(s)
      伊藤昭博
    • Organizer
      第11回SUMO研究会
    • Place of Presentation
      和光
    • Year and Date
      2014-01-10
    • Related Report
      2013 Final Research Report
  • [Presentation] タンパク質SUMO化を標的とした阻害剤の探索―タンパク質SUMO化酵素阻害剤およびSUMO-SIM結合阻害剤について―2014

    • Author(s)
      伊藤昭博
    • Organizer
      第11回SUMO研究会
    • Place of Presentation
      和光
    • Related Report
      2013 Annual Research Report
  • [Presentation] タンパク質SUMO化を標的とした化合物の同定とその抗がん活性2014

    • Author(s)
      伊藤昭博
    • Organizer
      新学術領域研究 天然物ケミカルバイオロジー地区ミニシンポジウム 「化学と生物学の壁と打開策:次世代天然物ケミカルバイオロジー研究の開拓へ」
    • Place of Presentation
      和光
    • Related Report
      2013 Annual Research Report
  • [Presentation] タンパク質SUMO化を標的とした化合物の探索2013

    • Author(s)
      伊藤昭博、吉田稔
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Year and Date
      2013-09-11
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 脱SUMO化酵素SENP1阻害剤の探索2013

    • Author(s)
      伊藤昭博、掛谷秀昭、吉田稔
    • Organizer
      第17回日本がん分子標的治療学会学術集会
    • Place of Presentation
      京都
    • Year and Date
      2013-06-13
    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
  • [Presentation] 脱SUMO化酵素SENP1を標的とした阻害剤の探索2013

    • Author(s)
      竹本操、伊藤昭博、広浜美香子、掛谷秀昭、吉田稔
    • Organizer
      日本ケミカルバイオロジー学会 第8回年会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] SUMO化・脱SUMO化阻害剤の現状2012

    • Author(s)
      伊藤昭博
    • Organizer
      第10回SUMO化研究会
    • Place of Presentation
      熊本
    • Year and Date
      2012-11-22
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] SUMO E2阻害剤としてのエラグ酸の発見とがん治療薬としての可能性2012

    • Author(s)
      伊藤昭博、木村賢一、吉田稔
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      札幌
    • Year and Date
      2012-09-21
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] Spectomycin B1 suppresses Estrogen Receptor α-Dependent Breast Cancer Cell Growth by inhibiting a SUMO E2 Activity2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, Hiroyuki Osada, Minoru Yoshida
    • Organizer
      2nd SNU-RIKEN Joint Symposium on Chemical Biology, Chuncheon
    • Place of Presentation
      Chuncheon, South Korea
    • Year and Date
      2012-05-18
    • Related Report
      2013 Final Research Report
  • [Presentation] エラグ酸によるタンパク質SUMO化阻害2012

    • Author(s)
      米山操、広浜美香子、木村賢一、半田宏、伊藤昭博、吉田稔
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-23
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Discovery of spectomycin B1 as a SUMO E2 inhibitor and its potential for anti-breast cancer therapy2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, Hiroyuki Osada, Minoru Yoshida
    • Organizer
      Riken-Max Planck Joint Research Centerkick off symposium
    • Place of Presentation
      Dortmund, Germany
    • Year and Date
      2012-03-06
    • Related Report
      2013 Final Research Report
  • [Presentation] Discovery of Spectomycin B1 as a SUMO E2 Inhibitor2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, hiroyuki Osada, Minoru Yoshida
    • Organizer
      The 6th Korean-JapanChemical Biology Symposium
    • Place of Presentation
      札幌
    • Year and Date
      2012-01-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Spectomycin B1 suppresses Estrogen Receptor α-Dependent Breast Cancer Cell Growth by inhibiting a SUMO E2 Activity2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, Hiroyuki Osada, Minoru Yoshida
    • Organizer
      2nd SNU-RIKEN Joint Symposium on Chemical Biology
    • Place of Presentation
      Chuncheon, South Korea
    • Related Report
      2012 Research-status Report
  • [Presentation] Discovery of Spectomycin B1 as a SUMO E2 Inhibitor2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, hiroyuki Osada, Minoru Yoshida
    • Organizer
      The 6th Korean-Japan Chemical Biology Symposium
    • Place of Presentation
      札幌
    • Related Report
      2011 Research-status Report
  • [Presentation] Discovery of spectomycin B1 as a SUMO E2 inhibitor and its potential for anti-breast cancer therapy2012

    • Author(s)
      Akihiro Ito, Mikako Hirohama, Yasuhiro Igarashi, Yasumitsu Kondoh, Tamio Saito, Hiroyuki Osada, Minoru Yoshida
    • Organizer
      Riken-Max Planck Joint Research Center kick off symposium
    • Place of Presentation
      Dortmund, Germany
    • Related Report
      2011 Research-status Report
  • [Presentation] SUMO E2阻害剤の発見2011

    • Author(s)
      伊藤昭博
    • Organizer
      第2回京都大学GCOE-理化学研究所共同シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2011-11-11
    • Related Report
      2013 Final Research Report
  • [Presentation] タンパク質SUMO化を標的とした小分子化合物の探索2011

    • Author(s)
      伊藤昭博
    • Organizer
      第9回SUMO研究会
    • Place of Presentation
      出雲
    • Year and Date
      2011-09-30
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Spectomycin B1はSUMO E2を標的とする新規SUMO化阻害剤である2011

    • Author(s)
      伊藤昭博、吉田稔
    • Organizer
      日本がん分子標的治療学会第15回学術集会
    • Place of Presentation
      東京
    • Year and Date
      2011-06-23
    • Related Report
      2013 Final Research Report
  • [Presentation] Spectomycin B1はSUMO E2を標的とする新規SUMO化阻害剤である2011

    • Author(s)
      伊藤昭博、吉田稔
    • Organizer
      日本がん分子標的治療学会 第15回学術集会
    • Place of Presentation
      東京
    • Related Report
      2011 Research-status Report
  • [Remarks] 理化学研究所 環境資源科学研究センター ケミカルゲノミクス研究グループ

    • URL

      http://www.riken.jp/research/labs/csrs/chem_genom/

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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