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Biomolecular recognition ability of RecA as a model protein studied by using carbon nanotubes

Research Project

Project/Area Number 23540479
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics/Chemical physics
Research InstitutionTokyo University of Science

Principal Investigator

UMEMURA KAZUO  東京理科大学, 理学部, 准教授 (60281664)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords分子認識 / RecA / DNA / カーボンナノチューブ / 原子間力顕微鏡 / 電気泳動 / 蛋白質 / 生体分子認識
Research Abstract

RecA proteins and single-stranded DNA binding (SSB) proteins were reacted with hybrids of DNA and carbon nanotubes (CNT) in order to verify biomolecular recognition ability of the protein molecules. Hybrids of DNA and CNT were assumed as dummy molecules of DNA. We found that RecA molecules could bind onto DNA molecules adsorbed on CNT surfaces. However, helical filamentous structures that are formed on bare DNA molecules were not appeared in the case of the hybrids of DNA and CNT. We also found that SSB proteins could distinguish single-stranded DNA from double-stranded DNA molecules even on CNT surface. These results basically provided helpful information to understand tolerance of biomolecular recognition ability of the proteins. Furthermore, our data is valuable to evaluate conditions of DNA molecules on CNT surfaces.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (40 results)

All 2014 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (30 results) (of which Invited: 2 results) Remarks (4 results)

  • [Journal Article] Structures of Hybrids of DNA and Carbon Nanotubes Observed by Atomic Force Microscopy in Air and in Liquids2014

    • Author(s)
      Kazuo Umemura, Takuya Hayashida, Daisuke Nii, Yuuki Ymaguchi, Takuya Kawashima
    • Journal Title

      Journal of Multifunctional Composites

      Volume: 2 Pages: 67-70

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Surface morphology of hybrids of double-stranded DNA and single-walled carbon nanotubes studied by atomic force microscopy2013

    • Author(s)
      Takuya Hayashida, Kazuo Umemura
    • Journal Title

      Colloids and Surfaces B : Biointerfaces

      Volume: 101 Pages: 49-54

    • DOI

      10.1016/j.colsurfb.2012.06.018

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Atomic force microscopy imaging of dialyzed single-walled carbon nanotubes dispersed with sodium dodecyl sulfate2013

    • Author(s)
      Shigeyuki Hirayama, Takuya Hayashida, Kazuo Umemura
    • Journal Title

      International Journal of Smart and Nano Materials

      Volume: 4 Issue: 2 Pages: 119-127

    • DOI

      10.1080/19475411.2012.742170

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Controlling the adsorption and desorption of double-stranded DNA on functionalized carbon nanotube surface2013

    • Author(s)
      Daisuke Nii, Takuya Hayashida, Kazuo Umemura
    • Journal Title

      Colloids and Surfaces B : Biointerfaces

      Volume: 106 Pages: 234-239

    • DOI

      10.1016/j.colsurfb.2013.01.054

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kelvin Probe Force Microscopy of Single-Walled Carbon Nanotubes Modified with DNA or Polyethylene Glycol2013

    • Author(s)
      Takuya Hayashida, Takuya Kawashima, Daisuke Nii, Kazunari Ozasa, Kazuo Umemura
    • Journal Title

      Chemistry Letters

      Volume: 42 Issue: 6 Pages: 666-668

    • DOI

      10.1246/cl.130121

    • NAID

      10031176044

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fluctuation in the surface morphology of DNA-wrapped carbon nanotubes studied by continuous cross-sectional analysis of atomic force microscopy image2013

    • Author(s)
      Kazuo Umemura, Tomohiro Hirata, Takuya Hayashida, Daisuke Nii
    • Journal Title

      Researches and Applications in Mechanical Engineering (RAME), Review of Applied Physics

      Volume: 2 Pages: 51-54

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Selective adhesion of single-stranded DNA binding proteins onto hybrids of DNA and single-walled carbon nanotubes2014

    • Author(s)
      Kazuo Umemura, Daisuke Nii
    • Organizer
      Trends in Nanotechnology Japan (TNT Japan)
    • Place of Presentation
      Tokyo Big Sight, Japan
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Nanoscopic characterization of DNA molecules adsorbed on carbon nanotubes2014

    • Author(s)
      Kazuo Umemura
    • Organizer
      2014 EMN Spring Meeting
    • Place of Presentation
      Las Vegas, USA
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Invited
  • [Presentation] Bio-molecular recognition of RecA proteins for the DNA-modified Single-Walled Carbon Nanotubes2014

    • Author(s)
      大浦秀介, 二井大輔, 梅村和夫
    • Organizer
      第3回日本生物物理学会関東支部研究会
    • Place of Presentation
      明治大学中野キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] Bio-molecular recognition of RecA proteins for the DNA-modified Single-Walled Carbon Nanotubes2014

    • Author(s)
      大浦秀介,二井大輔,梅村和夫
    • Organizer
      第3回日本生物物理学会関東支部研究会
    • Place of Presentation
      東京都・明治大学中野キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] The effect of DNA adsorption on optical transitions in single-walled carbon nanotube2014

    • Author(s)
      Masahiro Ito, Yusuke Ito, Daisuke Nii, Hiroki Kato, Kazuo Umemura, Yoshikazu Homma
    • Organizer
      第46回 フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Place of Presentation
      東京大学 伊藤国際学術研究センター 伊藤謝恩ホール
    • Related Report
      2013 Annual Research Report
  • [Presentation] Optical Detection of DNA Hybridization and Denaturation on Single-Walled Carbon Nanotube Surface2014

    • Author(s)
      Yusuke Ito, Masahiro Ito, Daisuke Nii, Hiroki Kato, Kazuo Umemura, Yoshikazu Homma
    • Organizer
      第46回 フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Place of Presentation
      東京大学 伊藤国際学術研究センター 伊藤謝恩ホール
    • Related Report
      2013 Annual Research Report
  • [Presentation] ナノテクを用いた一分子・一細胞観察2013

    • Author(s)
      梅村和夫
    • Organizer
      福岡大学研究推進部主催研究会
    • Place of Presentation
      福岡大学
    • Year and Date
      2013-06-05
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] DNA and carbon nanotubes in liquids studied by atomic force microscopy2013

    • Author(s)
      Kazuo Umemura, Takuya Hayashida
    • Organizer
      International Conference on Surfaces, Coatings and Nanostructured Materials Asia (NANOSMAT-Asia)
    • Place of Presentation
      Wuhan, China
    • Related Report
      2013 Final Research Report
  • [Presentation] Attachment and detachment of double-stranded DNA molecules on functionalized single-walled carbon nanotubes2013

    • Author(s)
      K. Umemura, D. Nii, T. Hayashida
    • Organizer
      12th Asia Pacific Physics Conference
    • Place of Presentation
      Makuhari Messe, Chiba
    • Related Report
      2013 Final Research Report
  • [Presentation] Interaction of Biomolecules and Carbon Nanotubes Studied by Atomic Force Microscopy2013

    • Author(s)
      Kazuo Umemura
    • Organizer
      The 1st East-Asia Microscopy Conference (EAMC-1)
    • Place of Presentation
      Chongqing, China
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Selective adhesion of single-stranded DNA binding protein to DNA-SWNT hybrids2013

    • Author(s)
      二井大輔, 林田拓也, 梅村和夫
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] (5) 乾燥させた二本鎖DNA-単層カーボンナノチューブハイブリッドの光学測定2013

    • Author(s)
      伊藤 雅浩、小林 友樹、伊藤 悠介、林田 拓也、二井 大輔、梅村 和夫、本間 芳和
    • Organizer
      第74回応用物理学会秋季学術講演会
    • Place of Presentation
      同志社大学京田辺キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] (6) 単一化した二本鎖DNA-単層カーボンナノチューブハイブリッドの光学測定2013

    • Author(s)
      伊藤 悠介、伊藤 雅浩、小林 友樹、二井 大輔、梅村 和夫、本間 芳和
    • Organizer
      第74回応用物理学会秋季学術講演会
    • Place of Presentation
      同志社大学京田辺キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Photoluminescence from dried hybrids of double-stranded DNA and single walled carbon nanotubes2013

    • Author(s)
      Masahiro Ito, Yusuke Ito, Tomoki Kobayashi, Takuya Hayashida, Daisuke Nii, Kazuo Umemura, Yoshikazu Homma
    • Organizer
      第45回 フラーレン・ナノチューブ・グラフェン総合シンポジウム
    • Place of Presentation
      大阪府・大阪大学豊中キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Attachment and detachment of double-stranded DNA molecules on functionalized single-walled carbon nanotubes2013

    • Author(s)
      Kazuo. Umemura, Daisuke Nii, Takuya Hayashida
    • Organizer
      12th Asia Pacific Physics Conference
    • Place of Presentation
      Chiba, Japan
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA and carbon nanotubes in liquids studied by atomic force microscopy2013

    • Author(s)
      Kazuo Umemura, Takuya Hayashida
    • Organizer
      International Conference on Surfaces, Coatings and Nanostructured Materials Asia
    • Place of Presentation
      Ramada Plaza Optics Valley Hotel, Wuhan, China
    • Related Report
      2012 Research-status Report
  • [Presentation] 液中AFM 測定によるDNA‐単層カーボンナノチューブ複合体の直径評価2012

    • Author(s)
      林田拓也, 梅村和夫
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学
    • Related Report
      2013 Final Research Report
  • [Presentation] AFM画像の連続断面解析によるDNA-カーボンナノチューブ複合体の表面形状評価2012

    • Author(s)
      平田知宏, 林田拓也, 梅村和夫
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Study of dispersed single-walled carbon nanotubes by atomic force microscopy2012

    • Author(s)
      Kazuo Umemura, Takuya Hayashida, Tomohiro Hirata, Daisuke Nii, Yuuki Yamaguchi, Shigeyuki Hirayama
    • Organizer
      Fourth International Conference on Nano-structures SElf-Assembly
    • Place of Presentation
      Cagliari, Italy
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] Atomic force microscopy study of DNA-wrapped single-walled carbon nanotubes in aqueous conditions2012

    • Author(s)
      Takuya Hayashida, Kazuo Umemura
    • Organizer
      International Conference on Nanoscience + Technology (ICN+T 2012)
    • Place of Presentation
      Paris, France
    • Related Report
      2013 Final Research Report
  • [Presentation] Atomic force microscopy of dispersed carbon nanotubes2012

    • Author(s)
      Kazuo Umemura, Takuya Hayashida, Tomohiro Hirata, Daisuke Nii, Yuuki Yamaguchi, Shigeyuki Hirayama
    • Organizer
      International Conference on Nanoscience + Technology (ICN+T 2012)
    • Place of Presentation
      Paris, France
    • Related Report
      2013 Final Research Report
  • [Presentation] Controllable adsorption-desorption of double-stranded DNA onto single-walled carbon nanotube functionalized with polyethylene glycol2012

    • Author(s)
      Daisuke Nii, Takuya Hayashida, Kazuo Umemura
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Controllable adsorption-desorption of double-stranded DNA onto single-walled carbon nanotube functionalized with polyethylene glycol2012

    • Author(s)
      Daisuke Nii, Takuya Hayashida, Kazuo Umemura
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Atomic force microscopy study of DNA-wrapped single-walled carbon nanotubes in aqueous conditions2012

    • Author(s)
      Takuya Hayashida, Kazuo Umemura
    • Organizer
      International Conference on Nanoscience + Technology
    • Place of Presentation
      University Pierre et Marie Curie, Paris, France
    • Related Report
      2012 Research-status Report
  • [Presentation] Atomic force microscopy of dispersed carbon nanotubes2012

    • Author(s)
      Kazuo Umemura, Takuya Hayashida, Tomohiro Hirata, Daisuke Nii, Yuuki Yamaguchi, Shigeyuki Hirayama
    • Organizer
      International Conference on Nanoscience + Technology
    • Place of Presentation
      University Pierre et Marie Curie, Paris, France
    • Related Report
      2012 Research-status Report
  • [Presentation] 液中AFM測定によるDNA‐単層カーボンナノチューブ複合体の直径評価2012

    • Author(s)
      林田拓也、梅村和夫
    • Organizer
      日本物理学会 第67回年次大会
    • Place of Presentation
      兵庫県西宮市 関西学院大学西宮上ケ原キャンパス
    • Related Report
      2011 Research-status Report
  • [Presentation] AFM画像の連続断面解析によるDNA-カーボンナノチューブ複合体の表面形状評価2012

    • Author(s)
      平田知宏、林田拓也、梅村和夫
    • Organizer
      日本物理学会 第67回年次大会
    • Place of Presentation
      兵庫県西宮市 関西学院大学西宮上ケ原キャンパス
    • Related Report
      2011 Research-status Report
  • [Presentation] Surface structures of DNA-SWNT hybrids2011

    • Author(s)
      Takuya Hayashida, Kazuo Umemura
    • Organizer
      7th International Conference on Biological Physics (ICBP2011)
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] Comparative study of different types of DNA-wrapped single-walled carbon nanotubes2011

    • Author(s)
      Takuya Hayashida, Kazuo Umemura
    • Organizer
      3rd International Conference on Smart Materials and Nanotechnology in Engineering (SMN2011)
    • Place of Presentation
      Shenzhen, China
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Comparative study of DNA-carbon nanotube hybrids using atomic force microscopy2011

    • Author(s)
      Kazuo Umemura, Takuya Hayashida, Shigeyuki Hirayama
    • Organizer
      Trends in Nanotechnology International Conference (TNT2011)
    • Place of Presentation
      Tenerife, Spain
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Remarks]

    • URL

      http://www.rs.kagu.tus.ac.jp/biophys/index_en.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 梅村研究室ウェブサイト

    • URL

      http://www.rs.kagu.tus.ac.jp/biophys/index_jp.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 梅村研究室ウェブサイト

    • URL

      http://www.rs.kagu.tus.ac.jp/biophys/index_jp.html

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://ja-jp.facebook.com/pages/UME_lab-Biophysics-TUS/311200375604135

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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