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Investigation for the genetic factor of glaucoma in another viewpoint: an analysis of possible involvement of copy number variation (CNV) in genome

Research Project

Project/Area Number 23592562
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Ophthalmology
Research InstitutionHamamatsu University School of Medicine

Principal Investigator

MINOSHIMA Shinsei  浜松医科大学, メディカルフォトニクス研究センター, 教授 (90181966)

Co-Investigator(Kenkyū-buntansha) OHISHI Kentaro  浜松医科大学, メディカルフォトニクス研究センター, 助教 (80345826)
OHTSUBO Masafumi  浜松医科大学, メディカルフォトニクス研究センター, 助教 (10327653)
ISMAIL Thanseem  浜松医科大学, メディカルフォトニクス研究センター, 特任研究員 (60569846)
HOTTA Yoshihiro  浜松医科大学, 医学部, 教授 (90173608)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords開放隅角緑内障 / 正常眼圧緑内障 / コピー数多型 / CNV / ゲノムワイド解析 / マイクロアレイ / 欠失 / 重複 / 高眼圧症
Research Abstract

To detect the genomic copy number variation(s) (CNV) which affect the onset of primary open-angle glaucoma (POAG), 44 members from 34 families with the disease were subjected to the microarray assay. Of 1195 CNV loci found, 8 (6 sites of deletion and 2 of duplication) of patients-specific ones were novel or very rare and considered to change the dosage of gene. Deletion loci contained 7 genes and duplication ones 5 genes. These 12 genes possibly cause POAG by the abnormal increase or decrease of gene copy number.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (11 results)

All 2014 2013 2012 2011 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results)

  • [Journal Article] Interaction between optineurin and the bZIP transcription factor NRL2014

    • Author(s)
      Wang C, Hosono K, Ohtsubo M, Ohishi K, Gao J, Nakanishi N, Hikoya A, Sato M, Hotta Y, Minoshima S.
    • Journal Title

      Cell Biol. Int.

      Volume: 38(1) Issue: 1 Pages: 16-25

    • DOI

      10.1002/cbin.10174

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Clinical Phenotype in Ten Unrelated Japanese Patients with Mutations in the EYS Gene2014

    • Author(s)
      Suto K, Hosono K, Takahashi M, Hirami Y, Arai Y, Nagase Y, Ueno S, Terasaki H, Minoshima S, Kondo M, Hotta Y
    • Journal Title

      Ophthalmic Genet

      Volume: 35 Pages: 25-34

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Clinical Phenotype in Ten Unrelated Japanese Patients with Mutations in the EYS Gene.2013

    • Author(s)
      Suto K, Hosono K, Takahashi M, Hirami Y, Arai Y, Nagase Y, Ueno S, Terasaki H, Minoshima S, Kondo M, Hotta Y.
    • Journal Title

      Ophthalmic Genetics

      Volume: early on line Pages: 1-10

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Two Novel Mutations in the EYS Gene Are Possible Major Causes of Autosomal Recessive Retinitis Pigmentosa in the Japanese Population.2012

    • Author(s)
      Nakanishi H, Ueno S, Yokoi T, Hikoya A, Fujita T, Zhao Y, Nishina S, Shin JP, Kim IT, Yamamoto S, Azuma N, Terasaki H, Sato M, Kondo M, Minoshima M, Hotta Y.
    • Journal Title

      PLoS One

      Volume: 7(2) Issue: 2 Pages: e31036-e31036

    • DOI

      10.1371/journal.pone.0031036

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Elevated transcription factor specificity protein 1 in autistic brains alters the expression of autism candidate genes.2012

    • Author(s)
      Thanseem I
    • Journal Title

      Biol Psychiatry

      Volume: 71 Issue: 5 Pages: 410-8

    • DOI

      10.1016/j.biopsych.2011.09.020

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Clinical features of a Japanese case with Bothnia dystrophy2012

    • Author(s)
      Nojima K, Hosono K, Zhao Y, Toshiba T, Hikoya A, Asai T, Kato M. Kondo M, Minoshima S, Hotta Y
    • Journal Title

      Ophthalmic Genet

      Volume: 33(2) Issue: 2 Pages: 83-88

    • DOI

      10.3109/13816810.2011.634877

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.2012

    • Author(s)
      Gough CA, Homma K, Yamaguchi-Kabata Y, Shimada MK, Chakraborty R, Fujii Y, Iwama H, Minoshima S, Sakamoto S, Sato Y, Suzuki Y, Tada-Umezaki M, Nishikawa K, Imanishi T, Gojobori T.
    • Journal Title

      PLoS One

      Volume: 7 Issue: 11 Pages: e50445-e50445

    • DOI

      10.1371/journal.pone.0050445

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A novel big protein TPRBK possessing 25 units of TPR motif is essential for the progress of mitosis and cytokinesis.2012

    • Author(s)
      Izumiyama T, Minoshima S, Yoshida T, Shimizu N.
    • Journal Title

      Gene

      Volume: 511 Issue: 2 Pages: 202-17

    • DOI

      10.1016/j.gene.2012.09.061

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Two novel mutations in the EYS gene are possible major causes of autosomal recessive retinitis pigmentosa in the Japanese population2012

    • Author(s)
      Hosono K, Ishigami C, Takahashi M, Park DH, Hirami Y, Nakanishi H, Ueno S, Yokoi T, Fujita T, Shin JP, Kim IT, Yamamoto S, Azuma N, Terasaki H, Sato M, Kondo M, Minoshima S, Hotta Y et al
    • Journal Title

      PLoS One

      Volume: 7(2):e31036 Pages: 1-10

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Novel USH2A mutations in Japanese Usher syndrome type 2 patients: marked differences in the mutation spectrum between the Japanese and other populations2011

    • Author(s)
      Nakanishi H, Ohtsubo M, Iwasaki S, Hotta Y, Usami S, Mizuta K, Mineta H, Minoshima S
    • Journal Title

      J Hum Genet

      Volume: 56(7) Pages: 484-490

    • NAID

      10030659974

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Oligomerization of Optineurin and Its Oxidative Stress- or E50K Mutation-Driven Covalent Cross-Linking : Possible Relationship with Glaucoma Pathology

    • Author(s)
      Gao J, Ohtsubo M, Hotta Y, Minoshima S
    • Journal Title

      PLoS ONE

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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