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Monitoring the function of molecular beacon type probe at the single molecule level

Research Project

Project/Area Number 23655155
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

KAWAI Kiyohiko  大阪大学, 産業科学研究所, 准教授 (50314422)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
KeywordsDNA / 一分子観測 / 生物有機化学 / 蛍光相関分光 / blinking / 三重項励起状態 / 遺伝子診断 / 一分子計測(SMD) / RNA / 蛍光 / FCS / モレキュラービーコン / 診断 / 1分子 / 一塩基多型
Research Abstract

DNA site specifically modified with fluorescent molecule were synthesized. The lifetime of a fluorescent molecule in the triplet excited state was measured, which is reflected in the duration of the off time during the blinking of the fluorescence (tOFF). tOFF was determined by fluorescence correlation spectroscopy (FCS). It was demonstrated that the more a fluorescent molecule is exposed to a solvent, the faster its triplet excited state is quenched by molecular oxygen, resulting in a decrease of tOFF. DNA conformational change between a duplex and hairpin structure, function of the molecular beacon type probe, was successfully monitored by the blinking triggered by the changes in the solvent accessibility of the fluorescent molecule.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (57 results)

All 2014 2013 2012 2011 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results) Presentation (39 results) (of which Invited: 1 results) Book (6 results)

  • [Journal Article] Detection of single-nucleotide variations by monitoring the blinking of fluorescence induced by charge transfer in DNA2013

    • Author(s)
      K. Kawai, T. Majima, A. Maruyama
    • Journal Title

      ChemBioChem

      Volume: 14 Issue: 12 Pages: 1430-1433

    • DOI

      10.1002/cbic.201300380

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and charge transferability of DNA possessing a naphthalimide photosensitizer at an extrahelical position2013

    • Author(s)
      Tadao Takada, Yuta Kawano, Akane Ashida, Mitsunobu Nakamura, Kiyohiko Kawai, Tetsuro Majima, Kazushige Yamana
    • Journal Title

      Tetrahedron Letters

      Volume: 54 Issue: 35 Pages: 4796-4799

    • DOI

      10.1016/j.tetlet.2013.06.140

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Kinetics of Charge Transfer through DNA across Guanine-Cytosine Repeats Intervened by Adenine-Thymine Base Pair(s)2013

    • Author(s)
      Y. Osakada, K. Kawai, T. Majima
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 86 Issue: 1 Pages: 25-30

    • DOI

      10.1246/bcsj.20120224

    • NAID

      130004153124

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hole Transfer Kinetics of DNA2013

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima
    • Journal Title

      Accounts of Chemical Research

      Volume: 46 Issue: 11 Pages: 2616-2625

    • DOI

      10.1021/ar400079s

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of singletoxygen during photosensitized one-electronoxidation of DNA2012

    • Author(s)
      Yasuko Osakada, Mamoru Fujitsuka, Tetsuro Majima
    • Journal Title

      Chemistry-A EuropeanJournal

      Volume: Vol.18 Issue: 4 Pages: 1060-1063

    • DOI

      10.1002/chem.201101964

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Excess Electron Transfer Dynamics in DNA Hairpins Conjugated with N,N-Dimethylaminopyrene as a Photosensitizing Electron Donor2012

    • Author(s)
      M. Fujitsuka, K. Kawai, T. Majima
    • Journal Title

      Chem. Commun

      Volume: 48 Issue: 89 Pages: 11008-11010

    • DOI

      10.1039/c2cc36054c

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Excess-electroninjection and transfer in terthiophene-modified DNA : Terthiophene as a photosensitizingelectron donor for thymine, cytosine, and adenine2012

    • Author(s)
      Man Jae Park, Mamoru Fujitsuka, Tetsuro Majima
    • Journal Title

      Chemistry-A European Journal

      Volume: Vol.18 Issue: 7 Pages: 2056-2062

    • DOI

      10.1002/chem.201103663

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hole Transfer in LNA and 5-Me-2'-deoxyzebularine-Modified DNA2012

    • Author(s)
      K. Kawai, M. Hayashi, T. Majima
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Issue: 22 Pages: 9406-9409

    • DOI

      10.1021/ja302641e

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] HOMO Energy Gap Dependence of Hole-Transfer Kinetics in DNA2012

    • Author(s)
      K. Kawai, M. Hayashi, T. Majima
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Issue: 10 Pages: 4806-4811

    • DOI

      10.1021/ja2109213

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 分子の輝き方から情報を読み出す -1 分子レベル蛍光観測によるDNA 内電荷移動測定-2012

    • Author(s)
      川井清彦
    • Journal Title

      社団法人日本化学会生体機能関連部会NEWS LETTER

      Volume: 26-4 Pages: 8-11

    • URL

      http://seitai.chemistry.or.jp/newsletter/NL26-04.pdf

    • Related Report
      2013 Final Research Report
  • [Journal Article] Direct measurement ofthe dynamics of excess electron transfer throughconsecutive thymine sequence in DNA2011

    • Author(s)
      Man Jae Park, Mamoru Fujitsuka, Tetsuro Majima
    • Journal Title

      Journalof the American Chemical Society

      Volume: Vol.133 Issue: 39 Pages: 15320-15323

    • DOI

      10.1021/ja2068017

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Probing the Charge-Transfer Dynamics in DNA at the Single-Molecule Level2011

    • Author(s)
      K. Kawai, E. Matsutani, T. Majima
    • Journal Title

      J. Am. Chem. Soc

      Volume: 133 Issue: 39 Pages: 15568-15577

    • DOI

      10.1021/ja206325m

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 蛍光分子の溶媒接触表面積に基づくblinking2014

    • Author(s)
      川井清彦
    • Organizer
      日本化学会第94回春季年会
    • Place of Presentation
      名古屋(名古屋大学)
    • Year and Date
      2014-03-30
    • Related Report
      2013 Final Research Report
  • [Presentation] 蛍光分子の溶媒接触表面積に基づくblinking2014

    • Author(s)
      川井清彦、古下嵩、丸山厚、真嶋哲朗
    • Organizer
      日本化学会第94回春季年会
    • Place of Presentation
      名古屋(名古屋大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Detection of Single-Nucleotide Variations by Monitoring the Blinking Triggered by Charge Separation in DNA2013

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      横浜(神奈川大学)
    • Year and Date
      2013-11-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Blinking 観測によるDNA 1塩基違いの検出2013

    • Author(s)
      川井清彦
    • Organizer
      光化学討論会
    • Place of Presentation
      松山(愛媛大学)
    • Year and Date
      2013-09-12
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 内ホール移動における電荷非局在化2013

    • Author(s)
      川井清彦
    • Organizer
      日本化学会第93回春季年会
    • Place of Presentation
      草津(立命館大学)
    • Year and Date
      2013-03-24
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 内π空間を介したホール移動の高速化2013

    • Author(s)
      川井清彦
    • Organizer
      高次π空間の創発と機能開発第9回公開シンポジウム
    • Place of Presentation
      神戸(シーサイドホテル舞子ビラ)
    • Year and Date
      2013-03-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Blinking観測によるDNA 1塩基違いの検出2013

    • Author(s)
      川井清彦、真嶋哲朗、丸山厚
    • Organizer
      光化学討論会2013
    • Place of Presentation
      松山(愛媛大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Detection of Single-Nucleotide Variations by Monitoring the Blinking Triggered by Charge Separation in DNA2013

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima, Atsushi Maruyama
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      横浜(神奈川大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分子の輝きから情報を読む2013

    • Author(s)
      川井清彦
    • Organizer
      東京工業大学生命理工学部セミナー
    • Place of Presentation
      横浜(東京工業大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA内ホール移動における電荷非局在化2013

    • Author(s)
      川井清彦、小阪田泰子、真嶋哲朗
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学(滋賀県)
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA内π空間を介したホール移動の高速化2013

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第9回公開シンポジウム
    • Place of Presentation
      シーサイドホテル舞子ビラ神戸(兵庫県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Hole-transfer dynamics determined by DNA flexibility2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋(名古屋大学)
    • Year and Date
      2012-11-16
    • Related Report
      2013 Final Research Report
  • [Presentation] Dynamics of Hole Transfer through DNA across Guanine-Cytosine Repeats2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      4th International Symposium on Emergence of Highly Elaborated π-Space and Its Function
    • Place of Presentation
      浜松(浜名湖ロイヤルホテル)
    • Year and Date
      2012-11-13
    • Related Report
      2013 Final Research Report
  • [Presentation] Hole Transfer through DNA : Mechanism and Single-Molecule Level Analysis2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      Japan-India Bilateral Seminar on Supramolecular Nanomaterials for Energy Innovaiton
    • Place of Presentation
      高松(アルファあなぶきホール)
    • Year and Date
      2012-10-14
    • Related Report
      2013 Final Research Report
  • [Presentation] DNAの柔軟性がホール移動速度に与える影響2012

    • Author(s)
      川井清彦
    • Organizer
      光化学討論会2012
    • Place of Presentation
      東京(東京工業大学)
    • Year and Date
      2012-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA内ホール移動速度の核酸塩基HOMO レベル依存性2012

    • Author(s)
      川井清彦
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      札幌(北海道大学)
    • Year and Date
      2012-09-06
    • Related Report
      2013 Final Research Report
  • [Presentation] CHARGE TRANSFER DYNAMICS IN DNA AT THE SINGLE MOLECULE LEVEL2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      XX International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Montreal (Canada)
    • Year and Date
      2012-08-06
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] DNAの柔軟化によるDNA内ホール移動の高速化2012

    • Author(s)
      川井清彦
    • Organizer
      高次π空間の創発と機能開発第8回公開シンポジウム
    • Place of Presentation
      加賀(ホテルアローレ)
    • Year and Date
      2012-07-19
    • Related Report
      2013 Final Research Report
  • [Presentation] HOMOレベル改変によるDNA 内電荷移動の高速化2012

    • Author(s)
      川井清彦
    • Organizer
      日本化学会第91回春季年会
    • Place of Presentation
      名古屋(名古屋大学)
    • Year and Date
      2012-03-26
    • Related Report
      2013 Final Research Report
  • [Presentation] Single molecule level DNA analysis based on charge transfer measurement2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC2012)
    • Place of Presentation
      東京(東京工業大学)
    • Related Report
      2013 Final Research Report
  • [Presentation] Single molecule level DNA analysis based on charge transfer measurement2012

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC2012)
    • Place of Presentation
      東京工業大学(東京都)
    • Related Report
      2012 Research-status Report
  • [Presentation] Hole-transfer dynamics determined by DNA flexibility2012

    • Author(s)
      Kiyohiko Kawai, Mitsuo Hayashi, Tetsuro Majima
    • Organizer
      第39回国際核酸化学シンポジウム
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Dynamics of Hole Transfer through DNA across Guanine-Cytosine Repeats2012

    • Author(s)
      Yasuko Osakada, Kiyohiko Kawai, and Tetsuro Majima
    • Organizer
      高次π空間の創発と機能開発第4回国際シンポジウム
    • Place of Presentation
      浜名湖ロイヤルホテル(静岡県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Hole Transfer through DNA: Mechanism and Single-Molecule Level Analysis2012

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      apan-India Bilateral Seminar on Supramolecular Nanomaterials for Energy Innovaiton
    • Place of Presentation
      アルファあなぶきホール(香川県)
    • Related Report
      2012 Research-status Report
  • [Presentation] DNAの柔軟性がホール移動速度に与える影響2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      光化学討論会2012
    • Place of Presentation
      東京工業大学(東京都)
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA内ホール移動速度の核酸塩基HOMOレベル依存性2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      第6 回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学(北海道)
    • Related Report
      2012 Research-status Report
  • [Presentation] Charge Transfer through DNA: Toward Single-Molecule Level DNA Analysis2012

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      Molecular Biology and Biochemistry, Simon Fraser University, Seminar
    • Place of Presentation
      Vancouver (Canada)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] DNAの柔軟化によるDNA内ホール移動の高速化2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第8回公開シンポジウム
    • Place of Presentation
      ホテルアローレ(石川県)
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA内電荷移動速度のHOMOレベルギャップ依存性2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] HOMOレベル改変によるDNA内電荷移動の高速化2012

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第7回公開シンポジウム
    • Place of Presentation
      松山
    • Related Report
      2011 Research-status Report
  • [Presentation] DNAが作り出すπ空間を通る電荷の移動2012

    • Author(s)
      川井清彦
    • Organizer
      生体π空間のイノベーション(招待講演)
    • Place of Presentation
      つくば
    • Related Report
      2011 Research-status Report
  • [Presentation] Single-molecule level measurement of charge-transfer dynamics in DNA2011

    • Author(s)
      Kiyohiko Kawai, Eri Matsutani, Atsushi Maruyama, and Tetsuro Majima
    • Organizer
      高次π空間の創発と機能開発第3回国際シンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2011 Research-status Report
  • [Presentation] Single-Molecule Level Measurement of Charge-Transfer Dynamics2011

    • Author(s)
      Kiyohiko Kawai, Eri Matsutani, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      第38回国際核酸化学シンポジウム
    • Place of Presentation
      札幌
    • Related Report
      2011 Research-status Report
  • [Presentation] Single-molecule level measurement of charge-recombination dynamics2011

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima
    • Organizer
      5th Pacific Symposium on Radical Chemistry(招待講演)
    • Place of Presentation
      白浜
    • Related Report
      2011 Research-status Report
  • [Presentation] 1分子レベル蛍光観測によるDNA配列情報の読み出し2011

    • Author(s)
      川井清彦、松谷恵利、丸山 厚、真嶋哲朗
    • Organizer
      第5 回バイオ関連化学シンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2011 Research-status Report
  • [Presentation] 蛍光分子を光増感剤とするDNA内電荷分離2011

    • Author(s)
      川井清彦、松谷恵利、真嶋哲朗
    • Organizer
      光化学討論会2011
    • Place of Presentation
      宮崎
    • Related Report
      2011 Research-status Report
  • [Presentation] Charge transfer dynamics in DNA at the single-molecule level2011

    • Author(s)
      Kiyohiko Kawai
    • Organizer
      2nd Seminar on Nanoparticles and Single(招待講演)
    • Place of Presentation
      高松
    • Related Report
      2011 Research-status Report
  • [Presentation] 分子の輝き方の観測に基づくDNA配列情報の読み出し2011

    • Author(s)
      川井清彦、松谷恵利、丸山 厚、真嶋哲朗
    • Organizer
      第33回日本光医学・光生物学会
    • Place of Presentation
      吹田
    • Related Report
      2011 Research-status Report
  • [Presentation] らせんねじれ角およびHOMOギャップ改変によるDNA分子ワイヤーの構築2011

    • Author(s)
      川井清彦、林 光雄、真嶋哲朗
    • Organizer
      高次π空間の創発と機能開発第6回公開シンポジウム
    • Place of Presentation
      岡崎
    • Related Report
      2011 Research-status Report
  • [Book] HOMO ギャップ改変および柔軟化によるDNA 分子ワイヤーの構築, 高次π空間の創発と機能開発2013

    • Author(s)
      川井清彦
    • Total Pages
      245
    • Publisher
      シーエムシー出版
    • Related Report
      2013 Final Research Report
  • [Book] 高次π空間の創発と機能開発2013

    • Author(s)
      川井清彦
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Research-status Report
  • [Book] Kinetics of long-range oxidative electron transfer through DNA, Radical and radicalion reactivity, in nucleic acid chemistry2011

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima
    • Total Pages
      458
    • Publisher
      Springer-Verlag, Inc
    • Related Report
      2013 Final Research Report
  • [Book] Electronic and Magnetic Properties of Chiral Molecules and Supramolecular Architectures for Topics in Current Chemistry2011

    • Author(s)
      K. Kawai, T. Majima
    • Publisher
      Springer-Verlag, Inc.
    • Related Report
      2011 Research-status Report
  • [Book] Photoinduced charge-separation in DNA, Photoinduced Phenomena in Nucleic Acids

    • Author(s)
      Kiyohiko Kawai, Tetsuro Majima
    • Publisher
      Springer-Verlag, Inc(in press)
    • Related Report
      2013 Final Research Report
  • [Book] DNA の光損傷・光回復, 光化学の事典

    • Author(s)
      川井清彦
    • Publisher
      朝倉書店(印刷中)
    • Related Report
      2013 Final Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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