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Analysis for the computation, memory and learning abilities of the Physarum plasmodium in terms of intelligent informatics

Research Project

Project/Area Number 23700187
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research Institution防衛大学校 (2012)
防衛大学校(総合教育学群、人文社会科学群、応用科学群、電気情報学群及びシステム工学群) (2011)

Principal Investigator

SHIRAKAWA Tomohiro  防衛大学校, 電気情報学群, 助教 (60582905)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords真性粘菌変形体 / 学習と知識獲得 / 生物計算 / アロメトリー / 走磁性 / 探索行動
Research Abstract

The plasmodium of true slime mold Physarum polycephalum is a unicellular and multinuclear giant amoeba. Recent studies demonstrated the presence of the abilities of computation, memory and learning in the organism. In this study, we tried to elucidate the mechanism of such phenomena and performed some experiments. As a result, we got following findings: 1. The motility of the plasmodium is ruled by some allometric laws. 2. The plasmodium has magnetotaxis. 3. The plasmodium is capable of associative learning. Furthermore, we found some clues to understand these phenomena by performing some simulations based on our experimental findings.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (41 results)

All 2013 2012 2011 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (24 results) Remarks (2 results)

  • [Journal Article] Construction of Molecular Learning Network2012

    • Author(s)
      Shirakawa T. and Sato H.
    • Journal Title

      Construction of Molecular Learning Network

      Pages: 111-116

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel taxis of the Physarum plasmodium and a taxis-based simulation of Physarum swarm2012

    • Author(s)
      Shirakawa T., Konagano R. and Inoue K.
    • Journal Title

      Proceeding of the 6th International Conference on Soft Computing and Intelligent Systems, and the 13th International Symposium on Advanced Intelligent Systems

      Pages: 296-300

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multi-scaled adaptability in motility and pattern formation of the Physarum plasmodium2012

    • Author(s)
      Shirakawa T., Yokoyama K., Yamachiyo M., Gunji Y.-P. and Miyake Y.
    • Journal Title

      Int. J. of Bio-Inspired Computation

      Volume: 4 Pages: 131-138

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Allometric Scaling Laws in the Exploratory Behavior of the Physarum Plasmodium2012

    • Author(s)
      Shirakawa T.
    • Journal Title

      Int. J. Artif. Life. Res.

      Volume: 3 Pages: 22-33

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Fractal-Based Analysis for the Energy Consumption Efficiency of Biological Networks2012

    • Author(s)
      Furuki H., Sato H. and Shirakawa T.
    • Journal Title

      Proceeding of the 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 16 Pages: 187-192

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of Molecular Learning Network2012

    • Author(s)
      Shirakawa T. and Sato H.
    • Journal Title

      Proceeding of the 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 16 Pages: 111-116

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Classification of Language Network by Bioinformatics Techniques2012

    • Author(s)
      Sato H., Shirakawa T., Kubo M. and Namatame A.
    • Journal Title

      Proceeding of the 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 16 Pages: 58-63

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multi-scaled adaptability in motility and pattern formation of the Physarum plasmodium2012

    • Author(s)
      Shirakawa T., Yokoyama K., Yamachiyo M., Gunji Y.-P. and Miyake Y.,
    • Journal Title

      Int. J. of Bio-Inspired Computation

      Volume: 印刷中

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cell Motility Viewed as Softness2012

    • Author(s)
      Koji Sawa, Igor Balaz and Shirakawa T.
    • Journal Title

      Int. J. Artif. Life. Res.

      Volume: 3 Issue: 1 Pages: 1-9

    • DOI

      10.4018/jalr.2012010101

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] An associative learning experiment using the plasmodium of Physarum polycephalum2011

    • Author(s)
      Shirakawa T., Gunji Y.-P. and Miyake Y.
    • Journal Title

      Nano Com. Net.

      Volume: 2 Pages: 99-105

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Analyzing double image illusion through double indiscernibility and lattice theory2011

    • Author(s)
      Sonoda K., Kitamura E., Tani I., Shirakawa T. and Gunji Y.-P.
    • Journal Title

      tripleC

      Volume: 9 Pages: 510-519

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] An adaptive and robust biological network based on the vacant-particle transportation model2011

    • Author(s)
      Gunji Y.-P., Shirakawa T. Niizato T., Yamachiyo Y. and Tani I.
    • Journal Title

      J. Theor. Biol.

      Volume: 100 Issue: 1 Pages: 187-200

    • DOI

      10.1016/j.jtbi.2010.12.013

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] The Physarum Plasmodium Spontaneously Switches its Morphological Development Pattern2011

    • Author(s)
      Yamachiyo M., Shirakawa T. and Gunji Y.-P.
    • Journal Title

      Proceeding of the 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 15 Pages: 19-22

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cell Motility Viewed as Softness2011

    • Author(s)
      Koji Sawa, Igor Balaž and Shirakawa T.
    • Journal Title

      Proceeding of the 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 15 Pages: 44-48

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Allometric Scaling Laws in the Exploratory Behavior of the Physarum Plasmodium2011

    • Author(s)
      Shirakawa T.
    • Journal Title

      Proceeding of the 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems

      Volume: 15 Pages: 131-137

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 真性粘菌変形体の走磁性とそれに基づく探索行動2013

    • Author(s)
      白川智弘,小長野隆介,井上桂太
    • Organizer
      日本機械学会第 25回バイオエンジニアリング講演会
    • Place of Presentation
      産業技術総合研究所つくばセンター
    • Year and Date
      2013-01-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Construction of molecular learning network2012

    • Author(s)
      Shirakawa T. and Sato H.
    • Organizer
      The 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      Kyoto (Japan)
    • Year and Date
      2012-12-13
    • Related Report
      2012 Final Research Report
  • [Presentation] Novel taxis of the Physarum plasmodium and a taxis-based simulation of Physarum swarm2012

    • Author(s)
      Shirakawa T., Konagano R. and Inoue K.
    • Organizer
      The 6th International Conference on Soft Computing and Intelligent Systems, The 13th International Symposium on Advanced Intelligent Systems
    • Place of Presentation
      Kobe (Japan),
    • Year and Date
      2012-11-21
    • Related Report
      2012 Final Research Report
  • [Presentation] Allometric scaling laws in the exploratory behavior of the Physarum plasmodium2011

    • Author(s)
      Shirakawa T.
    • Organizer
      The 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      Yokosuka (Japan)
    • Year and Date
      2011-11-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Allometries in the cell motility of the Physarum plasmodium,2011

    • Author(s)
      Shirakawa T.
    • Organizer
      International Symposium on Complex Systems 2011
    • Place of Presentation
      Tokyo (Japan)
    • Year and Date
      2011-11-01
    • Related Report
      2012 Final Research Report
  • [Presentation] The tubular structure of the Physarum plasmodium drives its cell motility,2011

    • Author(s)
      Shirakawa T.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 体長の伸展に駆動される真性粘菌変形体の細胞運動2011

    • Author(s)
      白川智弘,横山幹
    • Organizer
      日本機械学会 2011 年度年次大会
    • Place of Presentation
      東京工業大学大岡山キャンパス
    • Year and Date
      2011-09-14
    • Related Report
      2012 Final Research Report
  • [Presentation] 生物ネットワークが持つ形態のフラクタル次元とエネルギー消費量との相関

    • Author(s)
      古木秀和,佐藤浩,白川智弘
    • Organizer
      第 7 回内部観測研究会・第 24回計測自動制御学会SI部門共創システム部会研究会
    • Place of Presentation
      理化学研究所和光キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 行進タスク遂行時における歩行パターンの分析

    • Author(s)
      白川智弘,髙木晶寛,佐藤浩
    • Organizer
      第 7 回内部観測研究会・第 24回計測自動制御学会SI部門共創システム部会研究会
    • Place of Presentation
      理化学研究所和光キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生物の樹状ネットワークのフラクタル次元とその機能の相関

    • Author(s)
      古木秀和,佐藤浩,白川智弘
    • Organizer
      日本機械学会第 25 回バイオエンジニアリング講演会
    • Place of Presentation
      産業技術総合研究所つくばセンター
    • Related Report
      2012 Annual Research Report
  • [Presentation] 真性粘菌変形体の走磁性とそれに基づく探索行動

    • Author(s)
      白川智弘,小長野隆介,井上桂太
    • Organizer
      日本機械学会第 25 回バイオエンジニアリング講演会
    • Place of Presentation
      産業技術総合研究所つくばセンター
    • Related Report
      2012 Annual Research Report
  • [Presentation] 行進行動時における歩行パターンの分析

    • Author(s)
      高木晶寛,佐藤浩,白川智弘
    • Organizer
      日本機械学会第 25 回バイオエンジニアリング講演会
    • Place of Presentation
      産業技術総合研究所つくばセンター
    • Related Report
      2012 Annual Research Report
  • [Presentation] Fractal-based analysis for the energy consumption efficiency of biological networks

    • Author(s)
      Furuki H., Sato H. and Shirakawa T.
    • Organizer
      IES2012: The 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      Kansai Seminar House
    • Related Report
      2012 Annual Research Report
  • [Presentation] Construction of molecular learning network

    • Author(s)
      Shirakawa T. and Sato H.
    • Organizer
      IES2012: The 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      Kansai Seminar House
    • Related Report
      2012 Annual Research Report
  • [Presentation] Classification of language network by bioinformatics techniques

    • Author(s)
      Sato H., Shirakawa T., Kubo M. and Namatame A.
    • Organizer
      IES2012: The 16th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      Kansai Seminar House
    • Related Report
      2012 Annual Research Report
  • [Presentation] Novel taxis of the Physarum plasmodium and a taxis-based simulation of Physarum swarm

    • Author(s)
      Shirakawa T., Konagano R. and Inoue K.
    • Organizer
      SCIS-ISIS2012: The 6th International Conference on Soft Computing and Intelligent Systems, The 13th International Symposium on Advanced Intelligent Systems
    • Place of Presentation
      Kobe International Conference Center
    • Related Report
      2012 Annual Research Report
  • [Presentation] Allometries in the CThe Physarum Plasmodium Spontaneously Switches its Morphological Development Patternell Motility of the Physarum Plasmodium

    • Author(s)
      Yamachiyo M., Shirakawa T. and Gunji Y.-P.
    • Organizer
      IES2011: The 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      京急観音崎ホテル(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Cell Motility Viewed as Softness

    • Author(s)
      Koji Sawa, Igor Balaž and Shirakawa T.,
    • Organizer
      IES2011: The 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      京急観音崎ホテル(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Allometric Scaling Laws in the Exploratory Behavior of the Physarum Plasmodium

    • Author(s)
      Shirakawa T.
    • Organizer
      IES2011: The 15th Asia Pacific Symposium on Intelligent and Evolutionary Systems
    • Place of Presentation
      京急観音崎ホテル(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Allometries in the Cell Motility of the Physarum Plasmodium

    • Author(s)
      Shirakawa T.
    • Organizer
      International Symposium on Complex Systems 2011
    • Place of Presentation
      東京大学本郷キャンパス(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] Dimension-physiology correlationship in the network of the Physarum plasmodium

    • Author(s)
      Furuki H. and Shirakawa T
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(兵庫県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Motility of the Physarum plasmodium in a magnetic field

    • Author(s)
      Konagano R. and Shirakawa T.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(兵庫県)
    • Related Report
      2011 Research-status Report
  • [Presentation] The tubular structure of the Physarum plasmodium drives its cell motility

    • Author(s)
      Shirakawa T
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(兵庫県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Cell motility of the Physarum plasmodium driven by the development of its tubular structure

    • Author(s)
      白川智弘,横山幹
    • Organizer
      日本機械学会2011年度年次大会
    • Place of Presentation
      東京工業大学大岡山キャンパス(東京都)
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://www.nda.ac.jp/~sirakawa/

    • Related Report
      2012 Final Research Report
  • [Remarks] Tomohiro Shirakawa official website

    • URL

      http://www.nda.ac.jp/~sirakawa/index.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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