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Experimental elucidation of dynamic behaviors to facilitate protein functions

Research Project

Project/Area Number 23750015
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Physical chemistry
Research InstitutionOsaka University

Principal Investigator

MIZUNO Misao  大阪大学, 理学(系)研究科(研究院), 助教 (10464257)

Project Period (FY) 2011-04-28 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords共鳴ラマン分光法 / 時間分解分光法 / 微生物型ロドプシン / タンパク質ダイナミクス / 光異性化 / イオン輸送 / 光センサー / 古細菌型ロドプシン
Outline of Final Research Achievements

Microbial rhodopsins function as either light-driven ion pumps or photosensors. In this study, structural dynamics of microbial rhodopsins were revealed by time-resolved resonance Raman spectroscopy. First, protein responses to photoisomerization of the retinal chromophore in the picosecond regime were investigated. Spectral changes in the ultraviolet resonance Raman bands due to the tryptophan and tyrosine residues in the vicinity of the chromophore were observed. It was found that the rates of primary protein response to the chromophore isomerization are similar among the rhodopsins. Second, temporal evolutions of the chromophore structure after nanoseconds were investigated by visible resonance Raman spectroscopy. For ion pumps, we revealed the structural changes of the hydrogen-bond network around the retinal chromophore which facilitate the ion pumping.

Report

(5 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (22 results)

All 2015 2014 2013 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (15 results) (of which Invited: 8 results) Remarks (4 results)

  • [Journal Article] The early steps in the photocycle of a photosensor protein sensory rhodopsin I from Salinibacter ruber2014

    • Author(s)
      Sudo, Y., Mizuno, M., Wei, Z., Takeuchi S., Tahara. T., Mizutani. Y.
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 6 Pages: 1510-1518

    • DOI

      10.1021/jp4112662

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Primary Structural Response in Tryptophan Residues of Anabaena Sensory Rhodopsin to Photochromic Reactions of the Retinal Chromophore2013

    • Author(s)
      Seisuke Inada, Misao Mizuno, Yoshitaka Kato, Akira Kawanabe, Hideki Kandori, Zhengrong Wei, Satoshi Takeuchi, Tahei Tahara, and Yasuhisa Mizutani
    • Journal Title

      Chemical Physics

      Volume: 419 Pages: 65-73

    • DOI

      10.1016/j.chemphys.2013.01.031

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Large spectral change due to amide modes of a β-sheet upon the formation of an early photointermediate of middle rhodopsin2013

    • Author(s)
      Furutani, Y., Okitsu, T., Reissig, L., Mizuno, M., Homma, M., Wada, A., Mizutani, Y., Sudo, Y.
    • Journal Title

      J. Phys. Chem. B

      Volume: 117 Issue: 13 Pages: 3449-3458

    • DOI

      10.1021/jp308765t

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Structural evolution of the retinal chromophore in the photocycle of microbial ion pumps2015

    • Author(s)
      Misao Mizuno
    • Organizer
      5th Asian Spectroscopy Conference
    • Place of Presentation
      University of Sydney, Australia
    • Year and Date
      2015-09-29 – 2015-10-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 時間分解共鳴ラマン分光法をもちいたレチナールタンパク質におけるレアイベント観測2015

    • Author(s)
      水野 操
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13 – 2015-09-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structural evolution of the retinal chromophore in the photocycle of microbial ion pumps2015

    • Author(s)
      Misao Mizuno, Ayumi Nakajima, Hideki Kandori, and Yasuhisa Mizutani
    • Organizer
      17th International Conference on Time-Resolved Vibrational Spectroscopy (TRVS2015)
    • Place of Presentation
      Wisconsin Institutes for Discovery, WI, USA
    • Year and Date
      2015-06-21 – 2015-06-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] 新規塩化物イオンポンプの発色団水素結合2015

    • Author(s)
      久保田 真司、水野 操、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学理工学部(千葉県船橋市)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Time-resolved Resonance Raman Study on Structural Evolution of Chromophore in Halorhodopsin from Natoronobacterium pharaonis2014

    • Author(s)
      Misao Mizuno, Ayumi Nakajima, Hideki Kandori, and Yasuhisa Mizutani
    • Organizer
      16th International Conference on Retinal Proteins (ICRP2014)
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Evolution of Chromophore Structure in Halorhodopsin Photointermediates2014

    • Author(s)
      Misao Mizuno, Ayumi Nakajima, Yumi Shimoo, Hideki Kandori, and Yasuhisa Mizutani
    • Organizer
      24th International Conference on Raman Spectroscopy (ICORS2014)
    • Place of Presentation
      Friedrich Schiller University Jena, Germany
    • Year and Date
      2014-08-10 – 2014-08-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Proton Release and Uptake in Retinal Chromophore of Cyanobacterial Ion-pumping Rhodopsin Revealed by Time-resolved Resonance Raman Spectroscopy2014

    • Author(s)
      Ayumi Nakajima, Misao Mizuno, Hideki Kandori, and Yasuhisa Mizutani
    • Organizer
      24th International Conference on Raman Spectroscopy (ICORS2014)
    • Place of Presentation
      Friedrich Schiller University Jena, Germany
    • Year and Date
      2014-08-10 – 2014-08-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Picosecond protein response to the chromophore isomerization in microbial rhodopsins2013

    • Author(s)
      Misao Mizuno, Seisuke Inada, Yumi Shimoo, Hideki Kandori, Yuki Sudo, and Yasuhisa Mizutani
    • Organizer
      16th International Conference on Time-Resolved Vibrational Spectroscopy (TRVS2013)
    • Place of Presentation
      別府湾ロイヤルホテル(大分)
    • Related Report
      2013 Research-status Report
  • [Presentation] ハロロドプシン光反応中間体のタンパク質構造ダイナミクス観測2013

    • Author(s)
      水野 操、下尾 祐未、神取 秀樹、水谷 泰久
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都テルサ(京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] 時間分解紫外共鳴ラマン分光法でとらえるタンパク質反応ダイナミクス

    • Author(s)
      水野 操
    • Organizer
      第13回日本蛋白質科学会年会ワークショップ「タンパク質反応における感応性化学種」
    • Place of Presentation
      とりぎん文化会館(鳥取)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 塩化物イオンポンプのタンパク質ダイナミクス

    • Author(s)
      水野 操、水谷 泰久
    • Organizer
      平成25年度生理研研究会「膜機能分子の機能・構造ゆらぎの時空間スペクトル解析」
    • Place of Presentation
      生理学研究所(岡崎)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 時間分解紫外共鳴ラマン分光法による高速タンパク質ダイナミクス観測

    • Author(s)
      水野 操
    • Organizer
      高エネ機構フォトンファクトリー 第2回先進的観測技術研究会-時間分解計測の最前線-
    • Place of Presentation
      高エネルギー加速器研究機構(つくば)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Observation of protein dynamics by ultraviolet resonance Raman spectroscopy

    • Author(s)
      Misao Mizuno
    • Organizer
      7th International Conference of Advanced Vibrational Spectroscopy (ICAVS-7)
    • Place of Presentation
      神戸コンベンションセンター(神戸)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Picosecond protein dynamics revealed by time-resolved ultraviolet resonance Raman spectroscopy

    • Author(s)
      Misao Mizuno
    • Organizer
      8th Asian conference of ultrafast phenomena
    • Place of Presentation
      ホテル北野プラザ六甲荘(神戸)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 紫外共鳴ラマン分光法によるタンパク質の高速ダイナミクス観測

    • Author(s)
      水野 操
    • Organizer
      先端的レーザー分校技術による分子科学の新展開
    • Place of Presentation
      自然科学研究機構 岡崎コンファレンスセンター
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks] 大阪大学水谷研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪大学 水谷研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 大阪大学水谷研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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