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Analysis of the molecular properties of vertebrate novel UV-absorbing proteins

Research Project

Project/Area Number 23770074
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Animal physiology/Animal behavior
Research InstitutionKyoto University

Principal Investigator

YAMASHITA Takahiro  京都大学, 大学院・理学研究科, 助教 (50378535)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords動物生理化学 / 光受容 / 蛋白質 / 紫外光 / 脳・神経
Research Abstract

We analyzed the molecular properties of Opn5 group which contains photoreceptive proteins widely distributed in vertebrates. We revealed that, among several subgroups of Opn5 group, Opn5m and Opn5L2 can bind 11-cis-retinal to form UV-sensitive pigments and photoisomerization into all-trans-retinal results in G protein activation. In addition, non-mammalian Opn5m and Opn5L2 can also directly bind all-trans-retinal to activate G protein without light irradiation. These data suggest that Opn5 proteins possibly provide the molecular basis for UV reception in vertebrates including humans and non-mammalian Opn5 proteins are also responsible for non-photoreceptive function.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (49 results)

All 2013 2012 2011 Other

All Journal Article (16 results) (of which Peer Reviewed: 15 results) Presentation (28 results) (of which Invited: 1 results) Book (4 results) Remarks (1 results)

  • [Journal Article] Glutamate acts as a partial inverse agonist to metabotropic glutamate receptor with a single amino acid mutation in the transmembrane domain.2013

    • Author(s)
      M. Yanagawa, T. Yamashita and Y. Shichida
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Issue: 14 Pages: 9593-601

    • DOI

      10.1074/jbc.m112.437780

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Chloride-dependent spectral tuning mechanism of L-group cone visual pigments2013

    • Author(s)
      Takahiro Yamashita
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 7 Pages: 1192-1197

    • DOI

      10.1021/bi3016058

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unique haplotype in exon 3 of cone opsin mRNA affects splicing of its precursor, leading to congenital color vision defect.2012

    • Author(s)
      H. Ueyama, S. Muraki-Oda, S. Yamade, S. Tanabe, T. Yamashita, Y. Shichidaand H. Ogita.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 424 Issue: 1 Pages: 152-7

    • DOI

      10.1016/j.bbrc.2012.06.094

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photochemical properties of mammalian melanopsin.2012

    • Author(s)
      T. Matsuyama, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 27 Pages: 5454-62

    • DOI

      10.1021/bi3004999

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment2012

    • Author(s)
      K. Sato, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 21 Pages: 4300-8

    • DOI

      10.1021/bi3000885

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The C-terminus of the G protein αsubunit controls the affinity of nucleotides2012

    • Author(s)
      N. Kimata, T. Yamashita, T. Matsuyama, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 2768-74

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A non-mammalian type opsin 5 functions dually in the photoreceptive and non-photoreceptive organs of birds.2012

    • Author(s)
      H. Ohuchi, T. Yamashita, S. Tomonari, S. Fujita-Yanagibayashi, K. Sakai, S. Noji and Y. Shichida
    • Journal Title

      PLoS One

      Volume: 7 Issue: 2 Pages: e31534-e31534

    • DOI

      10.1371/journal.pone.0031534

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photochemical nature of parietopsin.2012

    • Author(s)
      K. Sakai, Y. Imamoto, C.Y. Su, H. Tsukamoto, T. Yamashita, A. Terakita, K.W. Yau and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 9 Pages: 1933-41

    • DOI

      10.1021/bi2018283

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The C-Terminus of the G Protein α Subunit Controls the Affinity of Nucleotides.2012

    • Author(s)
      N. Kimata
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 2768-2774

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] A non-mammalian type opsin 5 functions dually in the photoreceptive and non-photoreceptive organs of birds.2012

    • Author(s)
      H. Ohuchi
    • Journal Title

      PLoS One

      Volume: 7

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Photochemical nature of parietopsin.2012

    • Author(s)
      K. Sakai
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 1933-1941

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments2011

    • Author(s)
      Keita Sato, Takahiro Yamashita, Hideyo Ohuchi, Yoshinori
    • Journal Title

      Biochemistry

      Volume: 50 Issue: 48 Pages: 10484-10490

    • DOI

      10.1021/bi201212z

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparative fluorescence resonance energy transfer analysis of metabotropic glutamate receptors: implications about the dimeric arrangement and rearrangement upon ligand bindings.2011

    • Author(s)
      M. Yanagawa, T. Yamashita and Y. Shichida
    • Journal Title

      J. Biol. Chem

      Volume: 286 Issue: 26 Pages: 22971-81

    • DOI

      10.1074/jbc.m110.206870

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments.2011

    • Author(s)
      K. Sato
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 10484-10490

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Comparative fluorescence resonance energy transfer analysis of metabotropic glutamate receptors: implications about the dimeric arrangement and rearrangement upon ligand bindings.2011

    • Author(s)
      M. Yanagawa
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 22971-22981

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 脊椎動物新規紫外光受容タンパク質~ヒトも紫外線を感じる?~2011

    • Author(s)
      山下高廣
    • Journal Title

      生物物理

      Volume: 51 Pages: 186-187

    • NAID

      10029140146

    • Related Report
      2011 Research-status Report
  • [Presentation] Molecular properties of vertebrate non-visual opsins, Opn5 and Opn5-like protein2012

    • Author(s)
      T. Yamashi ta
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Ascona/Switzerland
    • Year and Date
      2012-10-03
    • Related Report
      2012 Final Research Report
  • [Presentation] Comparative analysis of transducin activation by rhodopsin and cone pigments in nanodiscs2012

    • Author(s)
      K. Kojima, R. Maeda, Y. Imamoto, T. Ya ma shi t aand Y. Shichida
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大/愛知県
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of molecular properties of vertebrate non-visual opsins,Opn5 and Opn5-like protein2012

    • Author(s)
      T. Yamashi ta, H. Ohuchi, S. Tomonari, S. Fujita-Yanagibayashi, K. Sakai, S. Noji and Y. Shichida
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大/愛知県
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] Single amino acid substitution in the transmembrane domain of metabotropic glutamate receptor changes an agonist into an inverse agonist2012

    • Author(s)
      M. Ya nag a wa , T. Ya ma shi t aand Y. Shichida
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大/愛知県
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 非哺乳類脊椎動物が持つ光受容タンパク質Opn5L2の解析2012

    • Author(s)
      山下高廣・大内淑代・友成さゆり・柳林(藤田)彩理・酒井佳寿美・野地澄晴・七田芳則
    • Organizer
      日本動物学会第83回大会
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2012-09-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 非哺乳類脊椎動物が持つ光受容タンパク質Opn5L1の分子特性解析2012

    • Author(s)
      佐藤恵太・山下高廣・大内淑代・友成さゆり・湯本茜・柳林(藤田)彩理・酒井佳寿美・野地澄晴・七田芳則
    • Organizer
      日本動物学会第83回大会
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2012-09-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 新規Opn5類似タンパク質の分子特性解析2012

    • Author(s)
      湯本茜・山下高廣・大内淑代・友成さゆり・野地澄晴・七田芳則
    • Organizer
      日本動物学会第83回大会(
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2012-09-13
    • Related Report
      2012 Final Research Report
  • [Presentation] マウスメラノプシンの光応答特性2012

    • Author(s)
      松山オジョス武・山下高廣・今元泰・七田芳則
    • Organizer
      日本動物学会第83回大会
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2012-09-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 脊椎動物非視覚オプシンOpn5と類似タンパク質の比較解析2012

    • Author(s)
      山下高廣・大内淑代・友成さゆり・柳林(藤田)彩理・酒井佳寿美・野地澄晴・七田芳則
    • Organizer
      第16回視覚科学フォーラム
    • Place of Presentation
      埼玉医科大/埼玉県
    • Year and Date
      2012-08-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 非哺乳類特異的なオプシン5類似光受容タンパク質の解析2012

    • Author(s)
      山下高廣・大内淑代・友成さゆり・柳林(藤田)彩理・酒井佳寿美・野地澄晴・七田芳則
    • Organizer
      動物学会近畿支部春季発表会
    • Place of Presentation
      良女子大/奈良県
    • Year and Date
      2012-05-12
    • Related Report
      2012 Final Research Report
  • [Presentation] 脊椎動物光受容タンパク質Opn5の分子特性に関する比較解析2011

    • Author(s)
      湯本茜・山下高廣・酒井佳寿美・友成さゆり・大内淑代・七田芳則
    • Organizer
      日本動物学会第82回大会
    • Place of Presentation
      旭川市大雪クリスタルホール/北海道
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 非哺乳類が持つOpn5類似光受容タンパク質の分子特性解析2011

    • Author(s)
      山下高廣・大内淑代・友成さゆり・柳林(藤田)彩理・酒井佳寿美・野地澄晴・七田芳則
    • Organizer
      日本動物学会第82回大会
    • Place of Presentation
      旭川市大雪クリスタルホール/北海道
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 脊椎動物視物質のアポタンパク質"オプシン"におけるGタンパク質活性化能の比較解析2011

    • Author(s)
      澤登悠子・柳川正隆・山下高廣・七田芳則
    • Organizer
      日本動物学会第82回大会
    • Place of Presentation
      旭川市大雪クリスタルホール/北海道
    • Year and Date
      2011-09-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 長波長感受性錐体視物質に結合した塩化物イオンは活性状態の生成を促進する2011

    • Author(s)
      佐藤恵太・森住威文・山下高廣・今元泰・七田芳則
    • Organizer
      日本動物学会第82回大会
    • Place of Presentation
      旭川市大雪クリスタルホール/北海道
    • Year and Date
      2011-09-21
    • Related Report
      2012 Final Research Report
  • [Presentation] What should we learn from animal opsin diversification?2011

    • Author(s)
      T. Yamashi ta
    • Organizer
      第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-17
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of photobleaching processes of rhodopsin and cone pigments in nanodiscs2011

    • Author(s)
      K. Kojima, R. Maeda,I. Seki, T. Ya ma shi t a, Y. Imamoto and Y. Shichida
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Exploring the molecular function of Parietopsin2011

    • Author(s)
      K. Sakai, Y. Imamoto, T. Yamashitaand Y. Shi chi da
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] G protein activation mechanism by activated rhodopsin2011

    • Author(s)
      N. Kimata, T. Yamashita, T. Matsuyama. H, Y. Imamoto and Y.Shi chi da
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      日本生物物理学会第49回年会
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Dimeric arrangement of metabotropic glutamate receptor and its synergistic rearrangement upon the binding of two glutamates2011

    • Author(s)
      M. Ya nag a wa , T. Ya ma shi t aand Y. Shichida
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Molecular characterization of vertebrate ancient-long opsin2011

    • Author(s)
      K. Sato, T. Yamashita and Y. Shichida
    • Organizer
      5th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      奈良県新公会堂/奈良県
    • Year and Date
      2011-07-31
    • Related Report
      2012 Final Research Report
  • [Presentation] Direct interlink between C-Terminus of G Protein and its nucleotide-binding site2011

    • Author(s)
      N. Kimata, T. Yamashita, T. Matsuyama, Y. Imamoto and Y. Shichida
    • Organizer
      5th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      奈良県新公会堂/奈良県
    • Year and Date
      2011-07-31
    • Related Report
      2012 Final Research Report
  • [Presentation] Characterization of ligand induced and constitutive activity in rhodopsin2011

    • Author(s)
      T. Matsuyama, T. Yamashita, Y. Imamoto and Y. Shichida
    • Organizer
      5th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      奈良県新公会堂/奈良県
    • Year and Date
      2011-07-31
    • Related Report
      2012 Final Research Report
  • [Presentation] Functional evolution of opsins2011

    • Author(s)
      T. Yamashi ta
    • Organizer
      第13回日本進化学会年会シンポジウム
    • Place of Presentation
      京都大/京都府
    • Year and Date
      2011-07-30
    • Related Report
      2012 Final Research Report
  • [Presentation] Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein2011

    • Author(s)
      T. Yamashi ta, H. Ohuchi, S. Tomonari, K. Ikeda, K. Sakai and Y. Shichida
    • Organizer
      FASEB Conference "Biology & Chemistry of Vision"
    • Place of Presentation
      Tucson/USA
    • Year and Date
      2011-06-22
    • Related Report
      2012 Final Research Report
  • [Presentation] アフリカツメガエルVALオプシンの解析2011

    • Author(s)
      佐藤恵太・山下高廣・大内淑代・七田芳則
    • Organizer
      動物学会近畿支部春季発表会
    • Place of Presentation
      京都大/京都府
    • Year and Date
      2011-05-14
    • Related Report
      2012 Final Research Report
  • [Presentation] What should we learn from animal opsin diversification? Novel UV light-sensing system in vertebrates2011

    • Author(s)
      山下高廣
    • Organizer
      日本生物物理学会第49回年会(招待講演)
    • Place of Presentation
      兵庫県立大学
    • Related Report
      2011 Research-status Report
  • [Presentation] Functional evolution of opsins -Novel UV light-sensing system in vertebrates-2011

    • Author(s)
      山下高廣
    • Organizer
      日本進化学会第13回大会(招待講演)
    • Place of Presentation
      京都大学
    • Related Report
      2011 Research-status Report
  • [Presentation] Molecular properties of vertebrate non-visual opsins, Opn5 and Opn5-like protein

    • Author(s)
      山下高廣
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      スイス、アスコナ
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] Evolution and Senses2013

    • Author(s)
      Y. Shi chi da , T. Ya ma shi t a, H. Imai and T. Kishida
    • Publisher
      Springer
    • Related Report
      2012 Final Research Report
  • [Book] Evolution and Senses2013

    • Author(s)
      Y. Shichida
    • Total Pages
      46
    • Publisher
      Springer
    • Related Report
      2012 Annual Research Report
  • [Book] 「多様な光環境への動物の適応メカニズム」 「生き物たちのつづれ織り上」2012

    • Author(s)
      七田芳則、山下高廣
    • Publisher
      京都大学学術出版会
    • Related Report
      2012 Final Research Report
  • [Book] 脊椎動物新規紫外光受容タンパク質~ヒトも紫外線を感じる?~2011

    • Author(s)
      山下高廣
    • Publisher
      生物物理
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://photo1.biophys.kyoto-u.ac.jp/shichida/home_jp.html

    • Related Report
      2012 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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