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Screening of the direct target genes of Nodal signaling in the mouse epiblast

Research Project

Project/Area Number 23770254
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionKyushu University

Principal Investigator

OKI Shinya  九州大学, 医学(系)研究科(研究院), 助教 (90452713)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsマウスエピブラスト / Nodal / 多能性 / エピブラスト / 多分化能 / マウス初期発生
Research Abstract

We performed transcriptome analysis with mouse epiblasts, which were isolated from the E5.5 mouse embryos cultured for short time in the presence or absence of a chemical inhibitor specific to Nodal signaling. As the result, we identified a number of direct target genes whose expression level was altered by the inhibitor. In particular, genes upregulated by the inhibitor included those involved in neural fate decision. We further validated the transcriptome analyses with in situ hybridization method for genes involved in mouse early development. Therefore, we could list the direct target genes of Nodal signaling out of those already known to be altered in Nodal knock-out mice.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (14 results)

All 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 4 results) Presentation (4 results) Remarks (2 results)

  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima K, Oki S, Ohkawa Y, Sumi T, Meno C.
    • Journal Title

      Dev Biol.

      Volume: 15;380(2) Pages: 222-32

    • Related Report
      2013 Final Research Report
  • [Journal Article] Epiblast ground state is controlled by canonical Wnt/β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells2013

    • Author(s)
      Sumi T, Oki S, Kitajima K, Meno C.
    • Journal Title

      PLoS One

      Volume: 14;8(5)

    • Related Report
      2013 Final Research Report
  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima, Oki, Ohkawa, Sumi, Meno
    • Journal Title

      Dev Biol

      Volume: 380 Issue: 2 Pages: 222-32

    • DOI

      10.1016/j.ydbio.2013.05.011

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epiblast ground state is controlled by canonical Wnt/ β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells2013

    • Author(s)
      Sumi, Oki, Kitajima, Meno
    • Journal Title

      PLoS One

      Volume: 8 Issue: 5 Pages: e63378-e63378

    • DOI

      10.1371/journal.pone.0063378

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos2012

    • Author(s)
      Miki R, Yoshida T, Murata K, Oki S, Kume K, Kume S.
    • Journal Title

      Mech Dev.

      Volume: 128(11-12) Pages: 597-609

    • Related Report
      2013 Final Research Report
  • [Journal Article] Restriction of Wnt signaling in the dorsal otocyst determines semicircular canal formation in the mouse embryo2012

    • Author(s)
      Noda T, Oki S, Kitajima K, Harada T, Komune S, Meno C.
    • Journal Title

      Dev Biol.

      Volume: 1;362(1) Pages: 83-93

    • Related Report
      2013 Final Research Report
  • [Journal Article] Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos.2012

    • Author(s)
      Miki R, Yoshida T, Murata K, Oki S, Kume K, Kume S.
    • Journal Title

      Mech. Dev.

      Volume: 128 Issue: 11-12 Pages: 597-609

    • DOI

      10.1016/j.mod.2011.12.004

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Restriction of Wnt signaling in the dorsal otocyst determines semicircular canal formation in the mouse embryo2012

    • Author(s)
      T.Noda, et al
    • Journal Title

      Developmental Biology

      Volume: 362 Issue: 1 Pages: 83-93

    • DOI

      10.1016/j.ydbio.2011.11.019

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Development of a Mac GUI Application to Visualize Published Raw ChIP-seq data2013

    • Author(s)
      Shinya Oki and Chikara Meno
    • Organizer
      The 61st NIBB Conference "Cellular Community in Mammalian Embryogenesis"
    • Place of Presentation
      岡崎コンファレンスセンター
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖真弥
    • Organizer
      定量生物学の会第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス銀杏会館
    • Related Report
      2013 Final Research Report
  • [Presentation] Development of a GUI software to visualize high through-put sequence read archives2013

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス 銀杏会館
    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.dev.med.kyushu-u.ac.jp

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.devbio.med.kyushu-u.ac.jp

    • Related Report
      2013 Final Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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