• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of transcription therapy for skin cell rejuvenation using design-on-demand artificial transcription factors

Research Project

Project/Area Number 23K27298
Project/Area Number (Other) 23H02607 (2023)
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund (2024)
Single-year Grants (2023)
Section一般
Review Section Basic Section 47010:Pharmaceutical chemistry and drug development sciences-related
Basic Section 47050:Environmental and natural pharmaceutical resources-related
Sections That Are Subject to Joint Review: Basic Section47010:Pharmaceutical chemistry and drug development sciences-related , Basic Section47050:Environmental and natural pharmaceutical resources-related
Research InstitutionKyoto University

Principal Investigator

ナマシヴァヤム パンディアン  京都大学, 高等研究院, 講師 (20625446)

Co-Investigator(Kenkyū-buntansha) 杉山 弘  京都大学, 高等研究院, 研究員 (50183843)
Project Period (FY) 2024-04-01 – 2026-03-31
Project Status Granted (Fiscal Year 2024)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2025: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2024: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2023: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywordsミトコンドリア / 転写療法 / 活性酸素種 / 皮膚細胞の若返り / エピジェネティックコード
Outline of Research at the Start

細胞レベルでは加齢による皮膚の老化に伴って、ミトコンドリアのレドックス恒常性が低下し、遺伝子転写機構の変化・エピゲノムの乱れ・活性酸素種 (ROS) の過剰な産生が行われる。既存の生物活性化合物により、核やミトコンドリアによるROSを調節する複雑な遺伝子転写機構の分子成分を個別に標的とすることは可能である。しかし、複数の標的をオンデマンドで協調的に調節するプログラム可能な合成ツールは存在していない。本研究では、皮膚細胞の若返りに関与する複雑な核およびミトコンドリア遺伝子転写機構の協調的な調節を可能にするナノ粒子ベースの人工転写因子 (PRO-TF) を構築し、評価することを目標とする。

Outline of Annual Research Achievements

This fiscal year we have pioneered transcription theranostic platforms to achieve cellular rejuvenation by targeting inflammaging at the interface of epigenetic regulation, mitochondrial health, and nanotechnology. Biomass-derived and nitrogen-doped carbon quantum dots were developed as non-toxic, stimuli-responsive biosensors capable of detecting and modulating inflammatory signals, such as IL-6 and ROS, in vitro and in vivo. A synthetic epigenetic-metabolic modulator enhanced PGC1α-driven mitochondrial biogenesis,restored mitochondrial function, reduced oxidative stress, and improved metabolic flexibility in insulin-resistant cells. Complementary tools like AI-designed small molecules and DNA-based nanostructures enabled useful tools to achieve targeted transcription therapeutics.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

The project advanced more swiftly than planned, with key milestones completed ahead of schedule. Foundational experimental systems were established, expediting the design and validation of transcription-based theranostic platforms for cellular rejuvenation. Interdisciplinary collaborations enabled the seamless convergence of nanoparticle engineering, targeted bioimaging, and epigenetic-mitochondrial modulation, resulting in eight peer-reviewed publications. Through the institutional exchange framework, Skintegrity faculty members and early-career researchers engaged in bilateral visits between Kyoto University and the University of Zurich, enhancing collaborative synergies. Also, Kyoto University launched the INtelligent ChemBioInformatics, a multi-lateral initiative on healthy aging.

Strategy for Future Research Activity

Building on our successful development of carbon-based biosensors and mitochondrial immunomodulators, this year’s research will focus on fine-tuning the transcription therapy tools for rejuvenation of aged skin cells. Using artificially-induced senescent cells and aged fibroblast models, we will assess transcriptional responses and mtDNA heteroplasmy via qPCR and transcriptome profiling. Dual treatment will clarify cross-talk between nuclear and mitochondrial targets and their influence on ROS regulation via DCFH-DA flow cytometry, collagen profiling, marker identification using FACS. Telomere-targeting PIPs will be used to track rejuvenation potential, while a microfluidic skin-on-chip model enable 3D model to fast-track the translation of our targeted transcription therapeutics.

Report

(2 results)
  • 2024 Research-status Report
  • 2023 Annual Research Report
  • Research Products

    (33 results)

All 2025 2024 2023 Other

All Int'l Joint Research (8 results) Journal Article (13 results) (of which Int'l Joint Research: 13 results,  Peer Reviewed: 13 results,  Open Access: 10 results) Presentation (10 results) (of which Int'l Joint Research: 5 results,  Invited: 10 results) Remarks (2 results)

  • [Int'l Joint Research] IIT Roorkee/IIT Bombay/Vellore Institute of Technology(インド)

    • Related Report
      2024 Research-status Report
  • [Int'l Joint Research] University of Zurich/AO Research Institute(スイス)

    • Related Report
      2024 Research-status Report
  • [Int'l Joint Research] National Cheng Kung University-Taiwan(その他の国・地域)

    • Related Report
      2024 Research-status Report
  • [Int'l Joint Research] University of Zurich/AO Research Institute/University of Basel(スイス)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] MacDiarmid Institute(ニュージーランド)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Vellore Institute of Technology/Anna University/University of Madras(インド)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] National Cheg Kung University(その他の国・地域)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Rutgers University(米国)

    • Related Report
      2023 Annual Research Report
  • [Journal Article] Bio-inspired nitrogen-doped carbon quantum dots: A green route for bioimaging and nano-biosensing2025

    • Author(s)
      Kumar Mahima、Shrestha Binod Babu、Chinnathambi Shanmugavel、Dutta Basudeb、Sivaniah Easan、Pandian Ganesh N.
    • Journal Title

      Industrial Crops and Products

      Volume: 227 Pages: 120817-120817

    • DOI

      10.1016/j.indcrop.2025.120817

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clock-Sleep Communication2025

    • Author(s)
      Pandi-Perumal Seithikurippu R.、Paul Sayan、Saravanan Konda Mani、Namasivayam Ganesh Pandian、Chidambaram Saravana Babu
    • Journal Title

      Current Molecular Medicine

      Volume: 25 Issue: 4 Pages: 399-415

    • DOI

      10.2174/0115665240305615240630113434

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Doxorubicin-Conjugated Terbium-Doped Carbon Dots for Site-Specific Colon Cancer Theranostics2025

    • Author(s)
      K. Dhanavardhini、A. S. P. Matthew、D. Tiasha、G R Tharani、R.Tamizhselvi、S. Anandh、N. Nireekshana、U. Kanniyappan、K. Venkat.、K. Subramani、C. Shanmugavel、Pandian Ganesh N.、G. A. Nirmala、C. S. Casimeer、M. Rajendiran
    • Journal Title

      ACS Applied Nano Materials

      Volume: 8 Issue: 13 Pages: 6274-6287

    • DOI

      10.1021/acsanm.4c06365

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Biomass-derived carbon dots as fluorescent quantum probes to visualize and modulate inflammation2024

    • Author(s)
      Kumar Mahima、Chinnathambi Shanmugavel、Bakhori Noremylia、Abu Norhidayah、Etezadi Fatemeh、Thangavel Vaijayanthi、Packwood Daniel、Sivaniah Easan、Pandian Ganesh N.
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 12665-12677

    • DOI

      10.1038/s41598-024-62901-7

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Subcutaneous adipose tissue: Implications in dermatological diseases and beyond2024

    • Author(s)
      Ziadlou Reihane、Pandian Ganesh N.、Hafner J?rg、Akdis Cezmi A.、Stingl Georg、Maverakis Emanual、Br?ggen Marie‐Charlotte
    • Journal Title

      Allergy

      Volume: 79 Issue: 12 Pages: 3310-3325

    • DOI

      10.1111/all.16295

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular Design for Cardiac Cell Differentiation Using a Small Data Set and Decorated Shape Features2024

    • Author(s)
      Etezadi Fatemeh、Ito Shunichi、Yasui Kosuke、Kado Abdalkader Rodi、Minami Itsunari、Uesugi Motonari、Ganesh Pandian Namasivayam、Nakano Haruko、Nakano Atsushi、Packwood Daniel M.
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 64 Issue: 23 Pages: 8824-8837

    • DOI

      10.1021/acs.jcim.4c01353

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Creation of Metal-Complex-Integrated Tensegrity Triangle DNA Crystals2024

    • Author(s)
      Abe Katsuhiko、Eki Haruhiko、Hirose Yuki、Park Soyoung、Chinnathambi Shanmugavel、Namasivayam Ganesh Pandian、Takeda Kazuki、Sugiyama Hiroshi、Endo Masayuki
    • Journal Title

      Molecules

      Volume: 29 Issue: 19 Pages: 4674-4674

    • DOI

      10.3390/molecules29194674

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] MOFs for next-generation cancer therapeutics through a biophysical approach?a review2024

    • Author(s)
      Shano Leon Bernet、Karthikeyan Subramani、Kennedy Lourdusamy John、Chinnathambi Shanmugavel、Pandian Ganesh N.
    • Journal Title

      Frontiers in Bioengineering and Biotechnology

      Volume: 12

    • DOI

      10.3389/fbioe.2024.1397804

    • Related Report
      2024 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Surface charge-dependent cytokine production using near-infrared emitting silicon quantum dots2024

    • Author(s)
      Chinnathambi Shanmugavel、Shirahata Naoto、Lesani Pooria、Thangavel Vaijayanthi、Pandian Ganesh N.
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 9618-9618

    • DOI

      10.1038/s41598-024-60536-2

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chalcone derivatives' interaction with human serum albumin and cyclooxygenase-22024

    • Author(s)
      Karthikeyan Subramani、Thirunarayanan Ayyavu、Shano Leon Bernet、Hemamalini Arasappan、Sundaramoorthy Anandh、Mangaiyarkarasi Rajendiran、Abu Norhidayah、Ganesan Singaravelu、Chinnathambi Shanmugavel、Pandian Ganesh N.
    • Journal Title

      RSC Advances

      Volume: 14 Issue: 4 Pages: 2835-2849

    • DOI

      10.1039/d3ra07438b

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleic acid‐based small molecules as targeted transcription therapeutics for immunoregulation2023

    • Author(s)
      Bai Dan、Ziadlou Reihane、Vaijayanthi Thangavel、Karthikeyan Subramani、Chinnathambi Shanmugavel、Parthasarathy Anutthaman、Cai Li、Br?ggen Marie‐Charlotte、Sugiyama Hiroshi、Pandian Ganesh N.
    • Journal Title

      Allergy

      Volume: 79 Issue: 4 Pages: 843-860

    • DOI

      10.1111/all.15959

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bat-associated microbes: Opportunities and perils, an overview2023

    • Author(s)
      Dhivahar J.、Parthasarathy Anutthaman、Krishnan Kathiravan、Kovi Basavaraj S.、Pandian Ganesh N.
    • Journal Title

      Heliyon

      Volume: 9 Issue: 12 Pages: e22351-e22351

    • DOI

      10.1016/j.heliyon.2023.e22351

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of biomass waste-based carbon quantum dots and their potential application as non-toxic bioimaging agents2023

    • Author(s)
      Abu Norhidayah、Chinnathambi Shanmugavel、Kumar Mahima、Etezadi Fatemeh、Bakhori Noremylia Mohd、Zubir Zuhana Ahmad、Md Salleh Shahrul Nizam、Shueb Rafidah Hanim、Karthikeyan Subramani、Thangavel Vaijayanthi、Abdullah Jaafar、Pandian Ganesh N.
    • Journal Title

      RSC Advances

      Volume: 13 Issue: 40 Pages: 28230-28249

    • DOI

      10.1039/d3ra05840a

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Mitochondrial Immunotherapy2025

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      World Immune Regulation Meeting- University of Zurich
    • Related Report
      2024 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Biomimetic nano-molecular codes for targeted transcription therapy2024

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Indo-Japan Symposium on Nanotheranostics -IIT Roorkee, India
    • Related Report
      2024 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Nucleic acid-based small molecule tools for cell fate control2024

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      IIT Bombay-Kyoto University Workshop on Chemical Biology on Nucleic Acids, India
    • Related Report
      2024 Research-status Report
    • Invited
  • [Presentation] SMART epigenetic switches for targeted stem cell differentiation2024

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      International Human iPSC and Cell Therapy Summit, Tainan city, Taiwan
    • Related Report
      2024 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Towards healthy aging: Precision cellular rejuvenation via programmable epigenetic switches2024

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Longevity Initiative, Indian Institute of Science, India
    • Related Report
      2024 Research-status Report
    • Invited
  • [Presentation] Targeted transcription therapy for autoimmune and inflammatory disorders: Progress & Prospects2024

    • Author(s)
      Ganesh Pandian NAMASIVAYAM
    • Organizer
      World Immune Regulation Meeting-2024, Davos.
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Scripting an Eco-system for Precision Medicine: Navigating the Journey to Bridge Boundaries for Synergistic Integration?"2024

    • Author(s)
      Ganesh Pandian NAMASIVAYAM
    • Organizer
      International Winter School "Quantifying Dynamics of Life"
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] Transcription Therapeutics for precision medicine2024

    • Author(s)
      Ganesh Pandian NAMASIVAYAM
    • Organizer
      Indian Institute of Science-Lecture series
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] DNA-based epigenetic switches as targeted transcription therapeutics2024

    • Author(s)
      Ganesh Pandian NAMASIVAYAM
    • Organizer
      Asia Symposium on Pharmaceutical Sciences for the Next Generation: Chemical Biology 1
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transcription therapy for cell fate control2023

    • Author(s)
      Ganesh Pandian NAMASIVAYAM
    • Organizer
      AO Research Institute, Davos.
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Remarks] Strengthening Indo-Japanese Collaborations

    • URL

      https://ir.iitr.ac.in/blog/posts/1876/

    • Related Report
      2024 Research-status Report
  • [Remarks] Joint research lab on healthy ageing

    • URL

      https://www.biospectrumasia.com/news/26/25254/iit-roorkee-and-kyoto-university-open-joint-research-lab-in-japan-with-focus-on-healthy-ageing.html

    • Related Report
      2024 Research-status Report

URL: 

Published: 2023-04-18   Modified: 2025-12-26  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi