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Control and elucidation of gene expression at a molecular level

Research Project

Project/Area Number 24225005
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionKyoto University

Principal Investigator

SUGIYAMA Hiroshi  京都大学, 理学研究科, 教授 (50183843)

Co-Investigator(Kenkyū-buntansha) 板東 俊和  京都大学, 理学(系)研究科(研究院), 准教授 (20345284)
遠藤 政幸  京都大学, 学内共同利用施設等, 准教授 (70335389)
Co-Investigator(Renkei-kenkyūsha) ARIVAZHAGAN RAJENDRAN  京都大学, 大学院理学研究科, 研究員 (90723122)
Suzuki Yuki  京都大学, 大学院理学研究科, 研究員 (50636066)
NAMASIVAYAN Ganesh Pandian  京都大学, 物質-細胞統合システム拠点, 特定研究員 (20625446)
SATO Shinsuke  京都大学, 大学院理学研究科, 特定職員
Research Collaborator HIDAKA Kumi  
EMURA Tomoko  
HASHIYA Kaori  
Taylor Rhys D.  
KAWAMOTO Yusuke  
ASAMITSU Sefan  
TANIGUCHI Junichi  
Project Period (FY) 2012-05-31 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥212,810,000 (Direct Cost: ¥163,700,000、Indirect Cost: ¥49,110,000)
Fiscal Year 2016: ¥26,000,000 (Direct Cost: ¥20,000,000、Indirect Cost: ¥6,000,000)
Fiscal Year 2015: ¥26,260,000 (Direct Cost: ¥20,200,000、Indirect Cost: ¥6,060,000)
Fiscal Year 2014: ¥56,810,000 (Direct Cost: ¥43,700,000、Indirect Cost: ¥13,110,000)
Fiscal Year 2013: ¥64,480,000 (Direct Cost: ¥49,600,000、Indirect Cost: ¥14,880,000)
Fiscal Year 2012: ¥39,260,000 (Direct Cost: ¥30,200,000、Indirect Cost: ¥9,060,000)
Keywords遺伝子発現制御 / エピジェネティックス / 細胞初期化 / Py-Imポリアミド / DNAナノ構造体 / 遺伝子発現 / 初期化 / エピジェネティクス
Outline of Final Research Achievements

The regulating methodologies of epigenetic gene expression were developed by using functional Py-Im polyamide conjugates in our laboratory. In addition, dynamic motions for one molecule level were directly visualized by using DNA frame technologies with atomic force microscope (AFM). By the combination with these chemical biology researches,we would realize to elucidate the mechanism of specific gene expression through the chemical approach based on DNA structures and functions.

Assessment Rating
Verification Result (Rating)

A+

Assessment Rating
Result (Rating)

A+: Progress in the research exceeds the initial goal. More than expected research results are expected.

Report

(9 results)
  • 2017 Research Progress Assessment (Verification Result) ( PDF )
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Products Report
  • Research Products

    (81 results)

All 2016 2015 2014 2013 2012 Other

All Journal Article (62 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 62 results,  Open Access: 9 results,  Acknowledgement Compliant: 20 results) Presentation (14 results) (of which Int'l Joint Research: 3 results,  Invited: 6 results) Remarks (2 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 2 results)

  • [Journal Article] Lipid-bilayer-assisted two-dimensional self-assembly of DNA origami nanostructures2015

    • Author(s)
      Yuki Suzuki, Masayuki Endo, Hiroshi Sugiyama
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 8052-8052

    • DOI

      10.1038/ncomms9052

    • NAID

      120005649314

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Single-MolecSingle-Molecule Visualization of the Zn2+-Dependent DNAzyme Functions2015

    • Author(s)
      M. Endo Y. Takeuchi, Y. Suzuki, T. Emura, K. Hidaka, F. Wang, I. Willner, H. Sugiyama
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 54 Issue: 36 Pages: 10550-10554

    • DOI

      10.1002/anie.201504656

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Direct visualization of walking motions of a photo-controlled DNA nanomachine on the DNA nanostructure2015

    • Author(s)
      Y. Yang, M. Goetzfried, K. Hidaka, M. You, W. Tan, H. Sugiyama, M. Endo
    • Journal Title

      Nano Letters

      Volume: 15 Issue: 10 Pages: 6672-6676

    • DOI

      10.1021/acs.nanolett.5b02502

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Single-Molecule Manipulation of the Duplex Formation and Dissociation at the G-quadruplex/i-motif Site in the DNA Nanostructure2015

    • Author(s)
      M. Endo, X. Xing, X. Zhou, T. Emura, K. Hidaka, B. Tuesuwan, H. Sugiyama
    • Journal Title

      ACS Nano

      Volume: 9 Issue: 10 Pages: 9922-9929

    • DOI

      10.1021/acsnano.5b03413

    • NAID

      120006462492

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Linking Two DNA Duplexes with a Rigid Linker for DNA Nanotechnology2015

    • Author(s)
      R. Tashiro, M. Iwamoto, H. Morinaga, T. Emura, K. Hidaka, M. Endo, H. Sugiyama
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Issue: 14 Pages: 6692-6700

    • DOI

      10.1093/nar/gkv662

    • NAID

      120005818257

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A novel detection technique of polyamide binding sites by photo-induced electron transfer in BrU substituted DNA2015

    • Author(s)
      Saha, A., Hashiya, F., Kizaki, S., Asamitsu, S., Hashiya, K., Bando, T., Sugiyama, H.
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 77 Pages: 14485-14488

    • DOI

      10.1039/c5cc05104e

    • NAID

      120006462491

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Selective Targeting of the KRAS Codon 12 Mutation Sequence by Pyrrole–Imidazole Polyamide seco-CBI Conjugates.2015

    • Author(s)
      Taylor RD, Chandran A, Kashiwazaki G, Hashiya K, Bando T, Nagase H and Sugiyama H.
    • Journal Title

      Chemistry.

      Volume: 21 Issue: 42 Pages: 14996-5003

    • DOI

      10.1002/chem.201501870

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A synthetic transcriptional activator of genes associated with retina in human dermal fibroblasts2015

    • Author(s)
      J. Syed, C. Anandhakumar, Ganesh N. Pandian, J. Taniguchi, S. Sato, K. Hashiya, G. Kashiwazaki, T. Bando, and H. Sugiyama
    • Journal Title

      ChemBioChem

      Volume: In press Issue: 10 Pages: 1497-1501

    • DOI

      10.1002/cbic.201500140

    • NAID

      120005670900

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preclinical Study of Novel Gene Silencer Pyrrole-Imidazole Polyamide Targeting Human TGF-β1 Promoter for Hypertrophic Scars in a Common Marmoset Primate Model.2015

    • Author(s)
      Igarashi J, Fukuda N, Inoue T, Nakai S, Saito K, Fujiwara K, Matsuda H, Ueno T, Matsumoto Y, Watanabe T, Nagase H, Bando T Sugiyama H Itoh T Soma M.
    • Journal Title

      PlosOne.

      Volume: 10(5) Issue: 5 Pages: e0125295-e0125295

    • DOI

      10.1371/journal.pone.0125295

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Integrating epigenetic modulators into NanoScript for enhanced chondrogenesis of stem cells2015

    • Author(s)
      S. Patel, T. Pongkulapa, P. Yin, Ganesh N. Pandian, C. Rathnam, T. Bando, T. Vaijayanthi, H. Sugiyama and K-B. Lee.
    • Journal Title

      Journal of the American Chemical Society (ACS Publications)

      Volume: 137 Issue: 14 Pages: 4598-4601

    • DOI

      10.1021/ja511298n

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tandem trimer pyrrole-imidazole polyamide probes targeting 18 base pairs in human telomere sequences2015

    • Author(s)
      Yusuke Kawamoto, Asuka Sasaki, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima, Hiroshi Sugiyama
    • Journal Title

      Chemical Science

      Volume: 6 Issue: 4 Pages: 2307-2312

    • DOI

      10.1039/c4sc03755c

    • NAID

      120005841416

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Rational design of specific binding hairpin Py-Im polyamides targeting human telomere sequences.2015

    • Author(s)
      Guo, C. X ., Kawamoto, Y., Asamitsu, S., Sawatani, Y., Hashiya, K., Bando, T., Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 23 Issue: 4 Pages: 855-860

    • DOI

      10.1016/j.bmc.2014.12.025

    • NAID

      120005555482

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A Synthetic DNA-binding Domain Guides Distinct Chromatin-modifying Small Molecules to Activate an Identical Gene Network.2015

    • Author(s)
      Han, L., Pandian, G, N., Chandran, A., Sato, S., Taniguchi, J., Kashiwazaki, G., Sawatani, Y., Hashiya, K., Bando, T., Xu, Y., Qian, X., Sugiyama, H.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 54 Issue: 30 Pages: 8700-8703

    • DOI

      10.1002/anie.201503607

    • NAID

      120006460099

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Inhibition of KRAS codon 12 mutants using a novel DNA-alkylating pyrrole-imidazole polyamide conjugate.2014

    • Author(s)
      Hiraoka K, Inoue T, Taylor RD, Watanabe T, Koshikawa N, Yoda H, Shinohara K, Takatori A, Sugimoto H, Maru Y, Denda T, Fujiwara K, Balmain A, Ozaki T, Bando T, Sugiyama H, Nagase H.
    • Journal Title

      Nat. Commun.

      Volume: 6 Issue: 1 Pages: 6706-6706

    • DOI

      10.1038/ncomms7706

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Specific Alkylation of Human Telomere Repeat Sequences by a Tandem-Hairpin Motif of Pyrrole-Imidazole Polyamides with Indole-Seco-CBI2014

    • Author(s)
      Yamamoto, M.; Bando, T.; Kawamoto, Y.; Taylor, R. D.; Hashiya, K.; Sugiyama, H.
    • Journal Title

      Bioconjugate Chem.

      Volume: 25 Issue: 3 Pages: 552-559

    • DOI

      10.1021/bc400567m

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Sequence-specific DNA Alkylation by Tandem Py-Im Polyamide Conjugates.2014

    • Author(s)
      Taylor, R, D.; Kawamoto, Y.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      Chem. Asian J.

      Volume: 9 Issue: 9 Pages: 2527-2533

    • DOI

      10.1002/asia.201402331

    • NAID

      120005647509

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Chemical Modification of a Synthetic Small Molecule Boosts its Biological Efficacy against Pluripotency Genes in Mouse Fibroblast.2014

    • Author(s)
      Saha, A.; Pandian, G. N.; Sato, S.; Taniguchi, J.; Kawamoto, Y.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      ChemMedChem

      Volume: 9 Issue: 10 Pages: 2374-2380

    • DOI

      10.1002/cmdc.201402117

    • NAID

      120005657928

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-Specific DNA Alkylation and Transcriptional Inhibition by Long-Chain Hairpin Pyrrole-Imidazole Polyamide-Chlorambucil Conjugates Targeting CAG/CTG Trinucleotide Repeats.2014

    • Author(s)
      Asamitsu, S.; Kawamoto, Y.; Hashiya, F.; Hashiya, K.; Yamamoto, M.; Kizaki, S.; Bando, T.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 22 Issue: 17 Pages: 4646-4657

    • DOI

      10.1016/j.bmc.2014.07.019

    • NAID

      120005474526

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Targeted Suppression of EVI1 Oncogene Expression by Sequence-Specific Pyrrole-imidazole Polyamide2014

    • Author(s)
      Junetha, S.; Pandian, G, N.; Sato, S.; Taniguchi, J.; Anandhakumar, C.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      Chem. Biol.

      Volume: 23 Issue: 10 Pages: 1370-1380

    • DOI

      10.1016/j.chembiol.2014.07.019

    • NAID

      120005512270

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Evaluation of Tandem Hairpin Pyrrole-Imidazole Polyamides Recognizing Human Telomeres.2014

    • Author(s)
      Akiyoshi Hirata, Kiyoshi Nokihara, Yusuke Kawamoto, Toshikazu Bando, Asuka Sasaki, Satoru Ide, Kazuhiro Maeshima, Takeshi Kasama, and Hiroshi Sugiyama
    • Journal Title

      Journal of the American Chemical Society

      Volume: 136 Issue: 32 Pages: 11546-11554

    • DOI

      10.1021/ja506058e

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] NanoScript: A Nanoparticle-Based Artificial Transcription Factor for Effective Gene Regulation.2014

    • Author(s)
      Patel, S.; Jung, D.; Yin, P.; Carlton, P.; Yamamoto, M.; Bando, T.; Sugiyama, H.; Lee, K, B.
    • Journal Title

      ACS Nano.

      Volume: 8 Issue: 9 Pages: 8959-8967

    • DOI

      10.1021/nn501589f

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Next-Generation Sequencing Studies Guide the Design of Pyrrole-Imidazole Polyamides with Improved Binding Specifictiy by the Addition of β-alanine.2014

    • Author(s)
      Anandhakumar, C.; Li, Y.; Kizaki, S.; Pandian, G. N.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      ChemBioChem

      Volume: 15 Issue: 18 Pages: 2647-2651

    • DOI

      10.1002/cbic.201402497

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a Small Molecule that Turns `ON` the Pluripotency Gene Circuitry in Human Fibroblasts.2014

    • Author(s)
      Pandian, G, N.; Sato, S.; Anandhakumar, C.; Taniguchi, J.; Takashima, K.; Syed, J; Han, L.; Saha, A.; Bando, T.; Nagase, H.; Sugiyama, H.
    • Journal Title

      ACS Chem. Biol.

      Volume: 9 Issue: 12 Pages: 2729-2736

    • DOI

      10.1021/cb500724t

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA Origami Based Visualization System for Studying Site-Specific Recombination Events2014

    • Author(s)
      Y. Suzuki, M. Endo, Y. Katsuda, K. Ou, K. Hidaka, H. Sugiyama
    • Journal Title

      Journal of the American Chemical Society

      Volume: 136(1) Issue: 1 Pages: 211-218

    • DOI

      10.1021/ja408656y

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Helical DNA origami tubular structures with various sizes and arrangements2014

    • Author(s)
      M. Endo, S. Yamamoto, T. Emura, K. Hidaka, N. Morone, J. E. Heuser, H. Sugiyama
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 53 Issue: 29 Pages: 7484-7490

    • DOI

      10.1002/anie.201402973

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Single-molecule mechanochemical sensing using DNA origami nanostructures2014

    • Author(s)
      D. Koirala, P. Shrestha, T. Emura, K. Hidaka, S. Mandal, M. Endo, H. Sugiyama, H. Mao
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 53 Issue: 31 Pages: 8137-8141

    • DOI

      10.1002/anie.201404043

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Direct and single-molecule visualization of the solution-state structures of G-hairpin and G-triplex intermediates2014

    • Author(s)
      A. Kajendran, M. Endo, K. Hidaka. H. Sugivama
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 53 Issue: 16 Pages: 4107-4112

    • DOI

      10.1002/anie.201308903

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] State-of-the Art High Speed Atomic Force Microscopy for the Investigation of Single-Molecular Dynamics of Proteins2014

    • Author(s)
      A. Rajendran, M. Endo, H. Sugiyama
    • Journal Title

      Chemical Reviews

      Volume: 114(2) Issue: 2 Pages: 1493-1520

    • DOI

      10.1021/cr300253x

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Construction and Characterization of Cy3- or Cy5-Conjugated Hairpin Pyrrole / Imidazole Polyamide Binding to DNA in the Nucleosome2014

    • Author(s)
      Han, Y-W.; Tsunaka, Y.; Yokota, H.; Matsumoto, T.; Kashiwazaki, G.; Morinaga, H.; Hashiya, K.; Bando, T.; Sugiyama, H.; Harada, Y.
    • Journal Title

      Biomater. Sci.

      Volume: 2 Issue: 3 Pages: 297-307

    • DOI

      10.1039/c3bm60202h

    • NAID

      120005587835

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-Specific DNA Recognition by Dimerized Cysteine Cyclic Pyrrole-Imidazole Polyamides2014

    • Author(s)
      Yamamoto, M.; Bando, T.; Morinaga, N.; Kawamoto, Y.; Hashiya, K.; Sugiyama, H.
    • Journal Title

      Chem. Eur. J.

      Volume: 20 Issue: 3 Pages: 752-759

    • DOI

      10.1002/chem.201302482

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Controlling Electron Rebound Within Four-Base Pi-Stacks in Z-DNA by Changing Sugar Moiety from Deoxy- to Ribonucleotide2014

    • Author(s)
      Sannohe, Y.; Kizaki, S.; Kanesato, S.;Fujiwara, A.;Morinaga, H.; Tashiro, R.;Sugiyama, H.
    • Journal Title

      Chem. Eur. J.

      Volume: 20 Issue: 5 Pages: 1223-1225

    • DOI

      10.1002/chem.201303930

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Emissive Deoxyguanine Analogue Capable of Direct Visualization of B-Z Transition2014

    • Author(s)
      Park, S.; Otomo, H.; Zheng, L.; Sugiyama, H.
    • Journal Title

      Chem. Comm.

      Volume: 50 Issue: 13 Pages: 1573-1575

    • DOI

      10.1039/c3cc48297a

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinct DNA-based epigenetic switches trigger differential transcriptional activation in human dermal fibroblasts2014

    • Author(s)
      Pandian GN, Nagase H
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 3843-3843

    • DOI

      10.1038/srep03843

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Long-Loop G-Quadruplexes are Misfolded Population Minorities with Fast Transition Kinetics in Human Telomeric Sequences2013

    • Author(s)
      Koirala, D.; Ghimire, C.; Bohrer, C.; Sannohe, Y.; Sugiyama, H.; Mao, H.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 135 Issue: 6 Pages: 2235-2241

    • DOI

      10.1021/ja309668t

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-specific electron injection into DNA from an intermolecular electron donor2013

    • Author(s)
      Morinaga H, Takenaka T, Hashiya F, Kizaki S, Hashiya K, Toshikazu B, Sugiyama H.
    • Journal Title

      Nucleic Acids Res.

      Volume: (印刷中) Issue: 8 Pages: 4724-4728

    • DOI

      10.1093/nar/gkt123

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and Biological Evaluation of a Targeted DNA-Binding Transcriptional Activator with HDAC8 Inhibitory Activity2013

    • Author(s)
      Saha, A.; Pandian, G. N.; Sato, S.; Taniguchi, J.; Hashiya, K.; Bando, T.;Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 21 Issue: 14 Pages: 4201-4209

    • DOI

      10.1016/j.bmc.2013.05.002

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solid-Supported DNA for Asymmetric Synthesis: a Stepping-Stone toward Practical Applications2013

    • Author(s)
      Han, Y-W.; Kashiwazaki, G.; Morinaga, H.; Matsumoto, T.; Hashiya, K.; Bando, T.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 21 Issue: 17 Pages: 5436-5441

    • DOI

      10.1016/j.bmc.2013.06.005

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solid-Supported DNA for Asymmetric Synthesis: a Stepping-Stone toward Practical Applications2013

    • Author(s)
      Park, S.; Ikehata, K.;Sugiyama, H.
    • Journal Title

      Biomater. Sci.

      Volume: 1 Issue: 10 Pages: 1034-1036

    • DOI

      10.1039/c3bm60134j

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Controlling the Stoichiometry and Strand Polarity of a Tetramolecular G-quadruplex Structure by Using a DNA Origami Frame2013

    • Author(s)
      A. Rajendran, M. Endo, K. Hidaka, P. L. T. Tran, J-L. Mergny, H. Sugiyama
    • Journal Title

      Nucleic Acids Research

      Volume: 41(18) Issue: 18 Pages: 8738-8747

    • DOI

      10.1093/nar/gkt592

    • NAID

      120005347132

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A Synthetic Small Molecule Enforces Targeted Transcriptional Activation of Germ Cell Genes in a Human Somatic Cell.2013

    • Author(s)
      Han L, Pandian GN, Junetha S, Sato S, Anandhakumar C, Taniguchi J, Saha A, Bando T, Nagase H and Sugiyama H.
    • Journal Title

      Angewandte Chemie

      Volume: 52 Issue: 50 Pages: 13410-13413

    • DOI

      10.1002/anie.201306766

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Evaluation of Tandem Hairpin Pyrrole-Imidazole Polyamides Recognizing Human Telomeres.2013

    • Author(s)
      Yusuke Kawamoto, Toshikazu Bando, Fukumi Kamada, Yue Li, Kaori Hashiya, Kazuhiro Maeshima, and Hiroshi Sugiyama
    • Journal Title

      Journal of the American Chemical Society

      Volume: 135 Issue: 44 Pages: 16468-77

    • DOI

      10.1021/ja406737n

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Clinical-Grade iPS Cells: Need For Versatile Small Molecules and Optimal Cell Sources2013

    • Author(s)
      Wu, Y-L.; Pandian, G. N.; Ding, Y-P.;Zhang, W.; Tanaka, Y.; Sugiyama, H.
    • Journal Title

      Chem. Biol.

      Volume: 20 Issue: 11 Pages: 1311-1322

    • DOI

      10.1016/j.chembiol.2013.09.016

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of B-Z Conformational Transition and Complex Formation with a Z-form-binding Protein by Introduction of Constraint to Double-stranded DNA using DNA Nanoscaffold2013

    • Author(s)
      M. Endo, M. Inoue, Y. Suzuki, C. Masui, H. Morinaga, K. Hidaka, H. Sugiyama
    • Journal Title

      Chemistry A European Journal

      Volume: 19(50) Issue: 50 Pages: 16887-16890

    • DOI

      10.1002/chem.201303830

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] HIV-I nucleocapsid proteins as molecular chaperones for tetramolecular antiparallel G-quadruplex formation2013

    • Author(s)
      A. Rajendran, M. Endo, K. Hidaka, P. L. T. Tran. J. -L.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 135 Issue: 49 Pages: 18575-18585

    • DOI

      10.1021/ja409085j

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-Specific DNA Alkylation Targeting for Kras Codon 13 Mutation by Pyrrole-Imidazole Polyamide seco-CBI Conjugates2013

    • Author(s)
      Taylor RD, Asamitsu S, Takenaka T, Yamamoto M, Hashiya K, Kawamoto Y, Bando T, Nagase H, Sugiyama H
    • Journal Title

      Chemistry

      Volume: 20 Issue: 5 Pages: 1310-1317

    • DOI

      10.1002/chem.201303295

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA-templated DNA origami structures2013

    • Author(s)
      M. Endo, S. Yamamoto, K. Tatsumi, T. Emura, K. Hidaka, H. Sugiyama
    • Journal Title

      Chemical Communications

      Volume: 49 Issue: 28 Pages: 2879-2881

    • DOI

      10.1039/c3cc38804b

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct and real-tine observation of rotary movement of a DNA nanomechanical device2013

    • Author(s)
      A. Rajendran, M. Endo, K. Hidaka, H. Sugiyama
    • Journal Title

      J.Am, Chem. Soc.

      Volume: 135 Issue: 3 Pages: 1117-1123

    • DOI

      10.1021/ja310454k

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design of a New Fluorescent Probe: Pyrrole/Imidazole Hairpin Polyamides with Pyrene Conjugation at Their γ-Turn2013

    • Author(s)
      Vaijayanthi, T.; Bando, T.; Hashiya, K.; Pandian, G. N.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 21 Issue: 4 Pages: 852-855

    • DOI

      10.1016/j.bmc.2012.12.018

    • NAID

      120005241442

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Control of the two-dimensional crystallization of DNA origami with various loop arrangements2013

    • Author(s)
      A. Rajendran, M. Endo, K. Hidaka, H. Sugiyaia
    • Journal Title

      Chem. Commun.

      Volume: 49 Issue: 7 Pages: 686-688

    • DOI

      10.1039/c2cc37257f

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA origami technology for biomaterials application2013

    • Author(s)
      Endo, M., Yang, Y., Sugiyama, H.
    • Journal Title

      Biomaterial Science

      Volume: 1 Issue: 4 Pages: 347-360

    • DOI

      10.1039/c2bm00154c

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Strategies to Tinker with Heritable Epigenetic Defects in Cellular Machinery: Lessons from Nature2013

    • Author(s)
      Pandian, G. N.; Sugiyama, H.
    • Journal Title

      Pharmaceuticals

      Volume: 6 Issue: 1 Pages: 1-24

    • DOI

      10.3390/ph6010001

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoreactivities of 5-Bromouracil-containing RNAs2013

    • Author(s)
      Morinaga H, Kizaki S, Takenaka T, Kanesato S, Sannohe Y, Tashiro R, Sugiyama H.
    • Journal Title

      Bioorg Med Chem

      Volume: 21 Issue: 2 Pages: 466-469

    • DOI

      10.1016/j.bmc.2012.11.010

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A synthetic small molecule for rapid induction of multiple pluripotency genes in mouse embryonic fibroblasts2012

    • Author(s)
      Pandian GN, Nakano Y, Sato S, Morinaga H, Bando T, Nagase H, Sugiyama H
    • Journal Title

      Sci Rep

      Volume: 2:544 Issue: 1 Pages: 544-544

    • DOI

      10.1038/srep00544

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of Pyrrole-Imidazole Polyamide Seco-CBI Conjugates with a Vinyl Linker recognizing 7 bp DNA sequence.2012

    • Author(s)
      Takagaki, T.; Bando, T.; Sugiyama, H.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 135 Issue: 31 Pages: 13074-13081

    • DOI

      10.1021/ja3044294

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photo-controllable DNA Origami Nanostructures Assembling into Predesigned Multiorientational Patterns2012

    • Author(s)
      Y. Yang, M. Endo, K. Hidaka, H. Sugiyama
    • Journal Title

      Journal of the American Chemical Society

      Volume: 134 Issue: 51 Pages: 20645-20653

    • DOI

      10.1021/ja307785r

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Binding of hairpin pyrrole and imidazole polyamides to DNA : relationship between torsion angle and association rate constants2012

    • Author(s)
      Han YW, Matsumoto T, Yokota H, Kashiwazaki G, Morinaga H, Hashiya K, Bando T, Harada Y, Sugiyama H.
    • Journal Title

      Nucleic Acids Res

      Volume: 40 Issue: 22 Pages: 11510-11517

    • DOI

      10.1093/nar/gks897

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Progress and Prospects of Pyrrole-Imidazole Polyamide-Fluorophore Conjugate as Sequence-Selective DNA Probes2012

    • Author(s)
      Vaijayanthi, T.; Bando, T.; Pandian, G. N.; Sugiyama, H.
    • Journal Title

      ChemBioChem

      Volume: 13 Issue: 15 Pages: 2170-2185

    • DOI

      10.1002/cbic.201200451

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct Visualization of the Movement of a Single T7 RNA Polymerase and Transcription on a DNA Nanostructure2012

    • Author(s)
      M. Endo, K. Tatsumi, K. Terushima, Y. Katsuda, K. Hidaka, Y. Harada, H. Sugiyama
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 51 Issue: 35 Pages: 8778-8782

    • DOI

      10.1002/anie.201201890

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule Visualization of the Hybridization and Dissociation of Photoresponsive Oligonucleotides and Their Reversible Switching Behavior in a DNA Nanostructure2012

    • Author(s)
      M. Endo, Y. Yang, Y. Suzuki, K. Hidaka, H. Sugiyama
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 51 Issue: 42 Pages: 10518-10522

    • DOI

      10.1002/anie.201205247

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Programmable Genetic Switiches to Control Transcrpitional Machinery of Pluripotency2012

    • Author(s)
      Pandian, G. N.; Sugiyama, H.
    • Journal Title

      Biotechnol. J.

      Volume: 7 Issue: 6 Pages: 798-809

    • DOI

      10.1002/biot.201100361

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and Functional Analysis of Proteins by High-Speed Atomic Force Microscopy2012

    • Author(s)
      A. Rajendran, M. Endo, H. Sugiyama
    • Journal Title

      Advances in Protein Chemistry and Structural Biology

      Volume: 87 Pages: 5-55

    • DOI

      10.1016/b978-0-12-398312-1.00002-0

    • ISBN
      9780123983121
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of Programmable Small DNA-Binding Molecules with Epigenetic Activity for Induction of Core Pluripotency Genes2012

    • Author(s)
      Pandian, G. N.; Ohtsuki, A.; Bando, T.; Sato, S.; Hashiya, K.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 20 Issue: 8 Pages: 2656-2660

    • DOI

      10.1016/j.bmc.2012.02.032

    • NAID

      120004025596

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Identification of genomic targets of DNA binding small molecules using next generation sequencing2015

    • Author(s)
      Anandhakumar Chandran, Rhys Taylor, Junetha Syed Jabarulla, Shinsuke Sato, Gengo Kashiwazaki, Toshikazu Bando, Hiroshi Sugiyama
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015 (PACIFICHEM 2015)
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthetic transcriptional activator of genes associated with retina in human dermal fibroblasts2015

    • Author(s)
      Junetha Syed Jabarulla, Anadhakumar Chandran, Ganesh Namasivayam Pandian, Junichi Taniguchi, Shinsuke Sato, Kaori Hashiya, Gengo Kashiwazaki, Toshikazu Bando, Hirosi Sugiyama
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015 (PACIFICHEM 2015)
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 小分子化合物によるOct3/4遺伝子発現の活性化2015

    • Author(s)
      佐藤慎祐、朝光世煌、Thangavel Vaijayanthi, Namasivayam Ganesh Pandian、谷口純一、Junetha Syed Jabarulla, Anandhakumar Chandran, Tingting Zou, Yulei Wei、橋谷かおり、板東俊和、杉山弘
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会(BMB2015)
    • Place of Presentation
      神戸市
    • Year and Date
      2015-12-03
    • Related Report
      2015 Annual Research Report
  • [Presentation] Sequence selective electron injection into the DNA using pyrrole imidazole polyamide: a novel approach for determining sequence selectivity2014

    • Author(s)
      Abhijit Saha、橋谷 文貴、木崎 誠一朗、Yue Li、板東 俊和、杉山 弘
    • Organizer
      第36回日本光医学・光生物学会
    • Place of Presentation
      豊中市、大阪大学
    • Year and Date
      2014-07-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] エピジェネティック活性を有する小分子化合物を用いた遺伝子発現制御2014

    • Author(s)
      谷口純一、Namasivayam Ganesh Pandian、Junetha Syed、佐藤慎祐、Le Han、板東俊和、杉山弘
    • Organizer
      日本ケミカルバイオロジー学会第9回年会
    • Place of Presentation
      豊中市、大阪大学
    • Year and Date
      2014-06-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Dynamic Assembly/Disassembly Processes of Photoresponsive DNA Origami Nanostructures Directly Visualized on a Lipid Membrane Surface2014

    • Author(s)
      Yuki Suzuki, Masayuki Endo, Yangyang Yang, Hiroshi Sugiyama
    • Organizer
      Foundations of Nanoscience Meeting (FNANO14)
    • Place of Presentation
      Snowbird, Utah, USA
    • Year and Date
      2014-04-17
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chemical Biology that Controls Structure and Function of DNA2013

    • Author(s)
      Hiroshi Sugiyama
    • Organizer
      A3RONA 2013 Japan
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] Chemical Biology that Controls Structure and Function:DNA Origami and Artifitial Genetic Switch2013

    • Author(s)
      Hiroshi Sugiyama
    • Organizer
      The 8th National Conference on Chemical Biology of China
    • Place of Presentation
      Shanghai, China
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Chemical Biology that Controls Structure and Function:DNA Origami and Artifitial Genetic Switch2013

    • Author(s)
      Hiroshi Sugiyama
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Chemical Biology that Controls DNA Structure and Function : DNA Origami and Artificial Genetic Switch2013

    • Author(s)
      Sugiyama, H.
    • Organizer
      International Symposium on Challenges in Chemical Biology, CSIR-Indian Institute of Chemical Biology
    • Place of Presentation
      Kolkata, India
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] DNA Origami and Artificial Genetic Switch2012

    • Author(s)
      Sugiyama, H.
    • Organizer
      TSRC(Telluride Science Research Center) Workshops, Nucleic Acid Topics, Telluride, USA
    • Place of Presentation
      Telluride, CO, USA
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Cell Reprogramming by SAHA-Polyamide Conjugate2012

    • Author(s)
      Sugiyama, H.
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Nagoya, Japan
    • Related Report
      2012 Annual Research Report
  • [Presentation] Chemical Biology of Nucleic Acids2012

    • Author(s)
      Sugiyama, H
    • Organizer
      4th EuCheMS Chemistry Congress
    • Place of Presentation
      Prague, Czech
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Chemical Biology that Controls DNA Structure and Function2012

    • Author(s)
      Sugiyama, H.
    • Organizer
      17th Malaysian Chemical Congress(17MCC)
    • Place of Presentation
      Kuala Lumpure, Malaysia
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks] 京都大学大学院理学研究科 化学専攻 生物化学分科

    • URL

      http://kuchem.kyoto-u.ac.jp/chembio/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 京都大学大学院理学研究科 化学専攻、生物化学分科

    • URL

      http://kuchem.kyoto-u.ac.jp/chembio

    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] ドライバーオンコジーンの遺伝子変異を標的にアルキル化する新規アルキル化剤2016

    • Inventor(s)
      永瀬浩喜, 杉山弘, 板東俊和
    • Industrial Property Rights Holder
      千葉県, 国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-05-10
    • Related Report
      Products Report
    • Overseas
  • [Patent(Industrial Property Rights)] ドライバーオンコジーンの遺伝子変異を標的にアルキル化する新規アルキル化剤2016

    • Inventor(s)
      永瀬浩喜, 杉山弘, 板東俊和
    • Industrial Property Rights Holder
      千葉県, 国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-04-07
    • Related Report
      Products Report
    • Overseas
  • [Patent(Industrial Property Rights)] 特定遺伝子の発現を活性化するCTB-PIポリアミドコンジュゲート2015

    • Inventor(s)
      杉山 弘 板東俊和
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-025715
    • Filing Date
      2015-02-12
    • Related Report
      2014 Annual Research Report

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Published: 2012-11-27   Modified: 2019-07-29  

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