• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

DNA methylation mapping device for cancer epigenome analysis

Research Project

Project/Area Number 24241050
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Microdevices/Nanodevices
Research InstitutionNagoya University

Principal Investigator

Baba Yoshinobu  名古屋大学, 工学(系)研究科(研究院), 教授 (30183916)

Co-Investigator(Renkei-kenkyūsha) KONDO Yutaka  名古屋市立大学, 大学院医学研究科, 教授 (00419897)
KAJI Noritada  名古屋大学, 大学院工学研究科, 准教授 (90402479)
OKAMOTO Yukihiro  大阪大学, 大学院基礎工学研究科, 講師 (50503918)
PARK Yeon-Su  SKIグローバルテクノロジー, 責任研究員 (50543534)
ONOSHIMA Daisuke  名古屋大学, 先端ナノバイオデバイス研究センター, 特任講師 (40510219)
YUKAWA Hiroshi  名古屋大学, 先端ナノバイオデバイス研究センター, 特任講師 (30634646)
YASUI Takao  名古屋大学, 大学院工学研究科, 助教 (00630584)
RAHONG Sakon  名古屋大学, 大学院工学研究科, 研究員 (20774277)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥47,710,000 (Direct Cost: ¥36,700,000、Indirect Cost: ¥11,010,000)
Fiscal Year 2015: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2014: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2013: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2012: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Keywordsナノバイオデバイス / DNAメチル化 / ナノ空間 / がん / エピジェネティクス / ナノデバイス / ナノピラー / ナノスリット / ナノバイオ / DNA / メチル化
Outline of Final Research Achievements

Not only inherent genome alternation but also acquired genome (epigenome) alternation is extremely important for people who have a high cancer or cancer death risk. In this research, we developed nanodevices to realize DNA methylation analysis, which is a typical cancer epigenome alternation, on a single DNA molecule. We demonstrated DNA methylation mapping on a single DNA molecule in the nano devices. Our developed system could analyze DNA methylation with higher accuracy and speed rather than conventional systems, and furthermore, it will help researchers to elucidate cancer pathogenic mechanism or realize early cancer diagnosis.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (38 results)

All 2015 2014 2013 2012 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results,  Acknowledgement Compliant: 5 results,  Open Access: 1 results) Presentation (14 results) (of which Int'l Joint Research: 4 results,  Invited: 10 results) Book (5 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Journal Article] Arrangement of a Nanostructure Array To Control Equilibrium and Nonequilibrium Transports of Macromolecules2015

    • Author(s)
      Yasui, T. Kaji, N. Ogawa, R. Hashioka, S. Tokeshi, M. Horiike, Y. Baba, Y.
    • Journal Title

      Nano Letters

      Volume: XXX Issue: 5 Pages: 3445-3451

    • DOI

      10.1021/acs.nanolett.5b00783

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Three-dimensional Nanowire Structures for Ultra-Fast Separation of DNA, Protein and RNA Molecules2015

    • Author(s)
      Rahong, S., T. Yasui, T. Yanagida, K. Nagashima, M. Kanai, G. Meng, Y. He, F.W. Zhuge, N. Kaji, T. Kawai, and Y. Baba
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 10584-10592

    • DOI

      10.1038/srep10584

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Conformation and dynamic behavior of single DNA molecules in nanofluidic channels for detection of dna methylation2015

    • Author(s)
      Sun, X., T. Yasui, S. Rahong, T. Yanagida, N. Kaji, M. Kanai, K. Nagashima, T. Kawai, and Y. Baba
    • Journal Title

      Micro Total Analysis Systems 2015

      Volume: 1 Pages: 1115-1117

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] High-throughput methylation mapping by detecting fluorescently stained methylation sites at a single molecule level2015

    • Author(s)
      Hattori, A., T. Yasui, N. Kaji, and Y. Baba
    • Journal Title

      Micro Total Analysis Systems 2015

      Volume: 1 Pages: 861-863

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Nanopillar, Nanowall, and Nanowire Devices for Fast Separation of Biomolecules2014

    • Author(s)
      T. Yasui, S. Rahong, N. Kaji, and Y. Baba
    • Journal Title

      Israel Journal of Chemistry

      Volume: 54 Pages: 1556-1563

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Microfluidic transfer of liquid interface for parallel stretching and stamping of terminal-unmodified single DNA molecules in zigzag-shaped microgrooves2014

    • Author(s)
      H. Yasaki, D. Onoshima, T. Yasui, H. Yukawa, N. Kaji, and Y. Baba
    • Journal Title

      Lab Chip

      Volume: 15 Issue: 1 Pages: 135-140

    • DOI

      10.1039/c4lc00990h

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MICROFLUIDIC STRETCHING OF DNA WITH FLUORESCENT GOLD NANOPARTICLE FOR OPTICAL/ELECTRON MICROSCOPIC IMAGING OF A SINGLE DNA METHYLATION2014

    • Author(s)
      D. Takeshita, D. Onoshima, Y. Hiroshi, T. Yashui, N. Kaji, and Y. Baba
    • Journal Title

      MicroTAS 2014

      Volume: 1 Pages: 2348-2350

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microfluidic biosensor for the detection of DNA by fluorescence enhancement and the following streptavidin detection by fluorescence quenching2014

    • Author(s)
      J. Wang, M. Aki, D. Onoshima, K. Arinag, N. Kaji, M. Tokeshi, S. Fujita, N. Yokoyama, Y. Baba
    • Journal Title

      Biosensors and Bioelectronics

      Volume: 51 Pages: 280-285

    • DOI

      10.1016/j.bios.2013.07.058

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plasmonic staining of DNA molecules with photo-induced Ag nanoparticles monitored using dark-field microscopy2013

    • Author(s)
      山本 裕子、平野 研、石堂 智美、村瀬 至生、馬場 嘉信、伊藤 民武
    • Journal Title

      PHYSICAL CHEMISTRY CHEMICAL PHYSICS

      Volume: 15 Issue: 25 Pages: 10316-10320

    • DOI

      10.1039/c3cp51494c

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plasmonic Imaging of Brownian Motion of Single DNA Molecules Spontaneously Binding to Ag Nanoparticles2013

    • Author(s)
      平野 研、石堂 智美、山本 裕子、村瀬 至生、市川 正敏、吉川 研一、馬場 嘉信、伊藤 民武
    • Journal Title

      NANO LETTERS

      Volume: 13 Issue: 5 Pages: 1877-1882

    • DOI

      10.1021/nl304247n

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simultaneous immunoassay analysis of plasma IL-6 and TNF-α on a microchip2013

    • Author(s)
      Abe K, Hashimoto Y, Yatsushiro S, Yamamura S, Bando M, Hiroshima Y, Kido J, Tanaka M, Shinohara Y, Ooie T, Baba Y, Kataoka M
    • Journal Title

      PLoS One

      Volume: 8 Issue: 1 Pages: e53620-e53620

    • DOI

      10.1371/journal.pone.0053620

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aqueous Phase Synthesized CdSe Magic-Sized Clusters: Solution Composition Dependence of Adsorption Layer Structure2012

    • Author(s)
      Yeon-Su Park, et al.
    • Journal Title

      J. Nanosci. Nanotech

      Volume: 12 Issue: 1 Pages: 539-546

    • DOI

      10.1166/jnn.2012.5354

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Monitoring transplanted adipose tissue-derived stem cells combined with heparin in the liver by fluorescence imaging using quantum dots2012

    • Author(s)
      Hiroshi Yukawa, et al.
    • Journal Title

      Biomaterials

      Volume: 33 Issue: 7 Pages: 2177-2186

    • DOI

      10.1016/j.biomaterials.2011.12.009

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Single Molecular DNA Methylation Points By Microfluidic Dna Molecule Stretching and Quantum Dot Detection2012

    • Author(s)
      Yukihiro Okamoto, et al.
    • Journal Title

      Micro Total Analysis Systems 2012

      Volume: - Pages: 1939-1941

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A deep microfluidic absorbance detection cell replicated from a thickly stacked SU-8 dry film resist mold2012

    • Author(s)
      D. Onoshima, et al.
    • Journal Title

      Analytical Methods

      Volume: 4 Issue: 12 Pages: 4368-4372

    • DOI

      10.1039/c2ay26099a

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differentiation of mouse pancreatic stem cells into insulin-producing cells by recombinant sendai virus-mediated gene transfer technology2012

    • Author(s)
      H. Yukawa, et al.
    • Journal Title

      Cell Medicine

      Volume: 3 Issue: 1-3 Pages: 51-61

    • DOI

      10.3727/215517912x639487

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Nanobiodevies for Future Medicine2015

    • Author(s)
      Baba, Y.
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NanoBiodevices for Cancer Diagnosis, Cancer Therapy, and iPS Cell Based Regenerative Medicine2015

    • Author(s)
      Baba, Y.
    • Organizer
      Symspoium on Recent trends in Nanofluidics and Nanofabrications
    • Place of Presentation
      Okinawa
    • Year and Date
      2015-10-31
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] HIGH-THROUGHPUT METHYLATION MAPPING BY DETECTING FLUORESCENTLY STAINED METHYLATION SITES AT A SINGLE MOLECULE LEVEL2015

    • Author(s)
      Hattori, A., T. Yasui, N. Kaji, and Y. Baba
    • Organizer
      The 19th International conference on miniaturized system for chemistry and life science (μTAS2015)
    • Place of Presentation
      Hwabaek International Convention Center, Gyeongju, KOREA
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nanobiodevices for Medical Innovation2015

    • Author(s)
      Baba, Y
    • Organizer
      GRDC (Global R&D Center) Symposium
    • Place of Presentation
      Seoul,Korea
    • Year and Date
      2015-10-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nano- and Quantum-Biodevices For Cancer Diagnosis, Cancer Therapy, and iPS Cell Based Regenerative Medicine2014

    • Author(s)
      Baba, Y
    • Organizer
      The 4th International Conference on Microfluidic Chip and Micro/NanoScale Bioseparation Analysis
    • Place of Presentation
      Wuhan, China
    • Year and Date
      2014-10-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] MICROFLUIDIC STRETCHING OF DNA WITH FLUORESCENCTGOLD NANOPPARTICLE FOR OPTICAL/ELECTRON MICROSCOPIC IMAGING OF A SINGLE DNA METHYLATION2014

    • Author(s)
      D. Takeshita, D. Onoshima, Y. Hiroshi, T. Yasui, N. Kaji, and Y. Baba
    • Organizer
      The 18th International COnference on Miniaturaized Systems for Chemistry and Life science
    • Place of Presentation
      San Antonio, USA
    • Year and Date
      2014-10-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nano- and Quantum-Biodevices For Cancer Diagnosis, Cancer Therapy, and iPS Cell Based Regenerative Medicine2014

    • Author(s)
      Baba, Y
    • Organizer
      Analytica
    • Place of Presentation
      Munich, Germany
    • Year and Date
      2014-04-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ライフ・ナノテクノロジー 次代の最先端技術・再生医療・個別化医療・イメージング2014

    • Author(s)
      馬場嘉信
    • Organizer
      第13回国際ナノテクノロジー総合展・技術会議 Life Technology特別シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ナノ・量子バイオデバイスによる次世代がん診断・治療とiPS細胞再生医療2014

    • Author(s)
      馬場嘉信
    • Organizer
      化学系学協会北海道支部冬季研究発表会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Nano- and Quantum-biodevices for Biomedical Applications2013

    • Author(s)
      Y. Baba
    • Organizer
      International Symposium on Multi-Omics and Nanobiotechnology
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Nanobiodevice based single molecule and single cell sensing for cancer diagnosis and in vivo imaging of stem cell therapy2012

    • Author(s)
      Y. Baba
    • Organizer
      The 3rd International Conference on Advances in Microfluidics and Nanofluidics (Plenary Lecture)
    • Place of Presentation
      Dalian, China
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ナノデバイスによる単一DNA分子からのメチル化部位検出

    • Author(s)
      水谷真夕, et al.
    • Organizer
      日本化学会第93春季大会
    • Place of Presentation
      立命館大学(滋賀県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 一分子ゲノムDNAのメチル化部位検出

    • Author(s)
      水谷真夕, et al.
    • Organizer
      第2回CSJ化学フェスタ
    • Place of Presentation
      東京工業大学(東京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Nanobiodevice based single molecule and cell analysis for cancer diagnosis and stem cell therapy

    • Author(s)
      Y. Baba
    • Organizer
      3rd International (West Lake) Forum on Microfluidic Analysis (Plenary Lecture)
    • Place of Presentation
      Hangzhou, China
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] ナノワイヤ3次元構造によるDNA解析技術の開発. バイオチップの基礎と応用―原理から最新の研究・開発動向まで―2015

    • Author(s)
      加地範匡, 安井隆雄, 湯川博, and 馬場嘉信
    • Total Pages
      8
    • Publisher
      シーエムシー出版
    • Related Report
      2015 Annual Research Report
  • [Book] ナノ流路を用いた単一分子解析技術2014

    • Author(s)
      加地範匡、安井隆雄、馬場嘉信
    • Publisher
      社団法人日本分析化学会
    • Related Report
      2014 Annual Research Report
  • [Book] Nanobiodevices for biomolecule analysis and imaging2013

    • Author(s)
      T. Yasui, N. Kaji, Y. Baba
    • Total Pages
      14
    • Publisher
      Annual Review of Analytical Chemistry
    • Related Report
      2013 Annual Research Report
  • [Book] 現代化学2013

    • Author(s)
      馬場嘉信
    • Publisher
      早期がん診断の研究最前線 がんの兆候をとらえる
    • Related Report
      2012 Annual Research Report
  • [Book] CSJカレントレビュー10 ここまで進んだバイオセンシング・イメージング ~1分子から細胞、脳まで~2012

    • Author(s)
      杉本直己, et al.
    • Publisher
      化学同人
    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 観察装置2015

    • Inventor(s)
      安井隆雄, 加地範匡, 馬場嘉信, 稲月友一
    • Industrial Property Rights Holder
      DNP
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-193695
    • Filing Date
      2015-09-30
    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] 生体分子の分離・抽出用デバイス及びその製造方法、並びに生体分子の分離・抽出方法2014

    • Inventor(s)
      安井隆雄、柳田剛、加地範匡、川合知二、馬場嘉信
    • Industrial Property Rights Holder
      名古屋大学、大阪大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-06-03
    • Related Report
      2014 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] テルル化合物ナノ粒子及びその製法2014

    • Inventor(s)
      鳥本 司、馬場 嘉信、亀山 達矢、石神 裕二郎
    • Industrial Property Rights Holder
      名古屋大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-068504
    • Filing Date
      2014-03-28
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-15   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi