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Construction of database of non-canonical structures of nucleic acids and its application for constructing artificial systems controlling biological reactions

Research Project

Project/Area Number 24245033
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKonan University

Principal Investigator

SUGIMOTO NAOKI  甲南大学, 先端生命工学研究所, 教授 (60206430)

Co-Investigator(Kenkyū-buntansha) ENDOH Tamaki  甲南大学, 先端生命工学研究所, 講師 (90550236)
TATEISHI Hisae  甲南大学, 先端生命工学研究所, 助教 (20593495)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥46,800,000 (Direct Cost: ¥36,000,000、Indirect Cost: ¥10,800,000)
Fiscal Year 2014: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2013: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2012: ¥26,130,000 (Direct Cost: ¥20,100,000、Indirect Cost: ¥6,030,000)
Keywords核酸構造 / 安定化エネルギー / 相互作用エネルギー / 分子クラウディング / 化学環境 / 四重鎖構造 / 転写反応 / 翻訳反応 / 溶液内化学環境 / ヘアピンRNA
Outline of Final Research Achievements

We quantitatively analyzed biophysical parameters of nucleic acids. To obtain the biophysical parameters, we constructed experimental systems considering molecular crowding conditions, which mimic intracellular molecular environment. We investigated effects of the biophysical parameters for non-canonical nucleic acid structures on gene expression. In addition, based on the chemical properties of the non-canonical structures, we designed artificial molecules that affect formation on the structures and their stabilities. We also demonstrated that transcription and translation reactions could be controlled by using the artificial molecules and systems. The results obtained in this study will provide new insights of biological significance of the non-canonical nucleic acid structures and novel technologies to regulate their functions in cells.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (179 results)

All 2015 2014 2013 2012 2011 Other

All Journal Article (52 results) (of which Peer Reviewed: 47 results,  Acknowledgement Compliant: 8 results,  Open Access: 3 results) Presentation (115 results) (of which Invited: 21 results) Book (7 results) Remarks (5 results)

  • [Journal Article] Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties2015

    • Author(s)
      A. B. Rode, T. Endoh, and N. Sugimoto
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 54 Issue: 3 Pages: 905-909

    • DOI

      10.1002/anie.201407385

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Effects of molecular crowding on the structures, interactions, and functions of nucleic acids2014

    • Author(s)
      Shu-chi Nakano, Daisuke Miyoshi, and Naoki Sugimoto
    • Journal Title

      Chem Rev.

      Volume: 114 Issue: 5 Pages: 2733-2758

    • DOI

      10.1021/cr400113m

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure, stability and behavior of nucleic acids in ionic liquids2014

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 14 Pages: 8831-8844

    • DOI

      10.1093/nar/gku499

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Choline Ion Interactions with DNA Atoms Explain Unique Stabilization of A-T Base Pairs in DNA Duplexes: A Microscopic View2014

    • Author(s)
      M. Nakano, H. Tateishi-Karimata, S. Tanaka, N. Sugimoto
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 2 Pages: 379-389

    • DOI

      10.1021/jp406647b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reduced graphene oxide upconversion nanoparticle hybrid for electrochemi luminescent sensing of a prognostic indicator in early-stage cancer2014

    • Author(s)
      L. Wu, J. Wang, M. Yin, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
    • Journal Title

      Small

      Volume: 10 Issue: 2 Pages: 330-336

    • DOI

      10.1002/smll.201301273

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Drastic stabilization of parallel DNA hybridizations by a polylysine omb-type copolymer with hydrophilic graft chain2014

    • Author(s)
      D. Miyoshi, Y. M. Ueda, N. Shimada, S. I. Nakano, N. Sugimoto, A. Maruyama
    • Journal Title

      ChemMedChem

      Volume: 9 Issue: 9 Pages: 2156-2163

    • DOI

      10.1002/cmdc.201402157

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Dangling ends perturb the stability of RNA duplex responsive to surrounding condition2014

    • Author(s)
      H. Tateishi-Karimata, S. Pramanik, S. Nakano, D. Miyoshi and N. Sugimoto
    • Journal Title

      ChemMedChem

      Volume: 9 Issue: 9 Pages: 2150-2155

    • DOI

      10.1002/cmdc.201402167

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Aptamer-based universal fluorometric sensors based on allosteric modulation of RNA-peptide interactions2014

    • Author(s)
      T. Endoh and N. Sugimoto
    • Journal Title

      ChemMedChem

      Volume: 9 Issue: 9 Pages: 2045-2048

    • DOI

      10.1002/cmdc.201402151

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The affinity of molecular ions for DNA structures is determined by solvent accessible surface area2014

    • Author(s)
      M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 32 Pages: 9583-9594

    • DOI

      10.1021/jp505107g

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription2014

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, and N. Sugimoto
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 20 Pages: 12949-12959

    • DOI

      10.1093/nar/gku998

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Methyl substitution regulates the enantioselectivity of supramolecular complex binding to human telomeric G-Quadruplex DNA2014

    • Author(s)
      B. Xu, C. Zhao, Y. Chen, H. Tateishi-Karimata, J. Ren, N. Sugimoto, and X. Qu
    • Journal Title

      Chem. Eur. J.

      Volume: 20 Issue: 50 Pages: 16467-16472

    • DOI

      10.1002/chem.201404854

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Noncanonical Structures and Their Thermodynamics of DNA and RNA Under Molecular Crowing: Beyond the Watson-Crick Double Helix2014

    • Author(s)
      N. Sugimoto
    • Journal Title

      Int. Rev. of Cell and Mol. Biol.

      Volume: 307 Pages: 205-273

    • DOI

      10.1016/b978-0-12-800046-5.00008-4

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] New insights into transcription fidelity : thermal stability of non-cononical structures in template DNA regulates transcriptional arrest, pause, and slippage2014

    • Author(s)
      H. Tateishi-Karimata, N. Isono, and N. Sugimoto
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 3 Pages: e90580-e90580

    • DOI

      10.1371/journal.pone.0090580

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparable stability of Hoogsteen and Watson-Crick base pairs in ionic liquid2014

    • Author(s)
      H. Tateishi-Karimata, M. Nakano, and N. Suigimoto
    • Journal Title

      Sci. Rep.

      Volume: 4 Issue: 1 Pages: 3593-3593

    • DOI

      10.1038/srep03593

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A highly sensitive telomerase activity assay that eliminates false-negative results caused by PCR inhibitors2014

    • Author(s)
      Hidenobu Yaku, Takashi Murashima, Daisuke Miyoshi, and Naoki Sugimoto
    • Journal Title

      Molecules

      Volume: 18 Issue: 10 Pages: 11751-11767

    • DOI

      10.3390/molecules181011751

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In vitro assays predictive of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei2013

    • Author(s)
      4. Hidenobu Yaku, Takashi Murashima, Daisuke Miyoshi, and Naoki Sugimoto
    • Journal Title

      J. Phys. Chem. B

      Volume: 118 Issue: 10 Pages: 2605-2614

    • DOI

      10.1021/jp410669t

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer2013

    • Author(s)
      A. Pica, I. Russo Krauss, A. Merlino, S. Nagatoishi, N. Sugimoto, and F. Sica
    • Journal Title

      FEBS J.

      Volume: 280 Issue: 24 Pages: 6581-6588

    • DOI

      10.1111/febs.12561

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unusual-1 ribosomal frameshift cused by statble RNA G-quadruplex in open reading frame2013

    • Author(s)
      T. Endoh and N. Sugimoto
    • Journal Title

      Anal. Chem.

      Volume: 85 Issue: 23 Pages: 11435-11439

    • DOI

      10.1021/ac402497x

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of pressure on the stability of G-quadruplex DNA: Thermodynamics under2013

    • Author(s)
      S. Takahashi and N. Sugimoto
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 52 Issue: 51 Pages: 13774-13778

    • DOI

      10.1002/anie.201307714

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics2013

    • Author(s)
      A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto, and V. Gabelica
    • Journal Title

      J. Phys. Chem. B

      Volume: 117 Issue: 41 Pages: 12391-12401

    • DOI

      10.1021/jp406857s

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple and cooperative binding of fluorescence light-up probe Thioflavin T with human telomere DNA G-quadruplex2013

    • Author(s)
      Valerie Gabelica, Ryuichi Maeda, Takeshi Fujimoto, Hidenobu Yaku, Takashi Murashima, Naoki Sugimoto, and Daisuke Miyoshi
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 33 Pages: 5620-5628

    • DOI

      10.1021/bi4006072

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts2013

    • Author(s)
      S. Nakano, Y. Uotani, Y. Sato, H. Oka, M. Fujii, and N. Sugimoto
    • Journal Title

      Nucleic Acids Res.

      Volume: 41 Issue: 18 Pages: 8581-8590

    • DOI

      10.1093/nar/gkt608

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and Affinity Analyses of G-Quadruplex DNA Aptamers for Camptothecin Derivatives2013

    • Author(s)
      Hiroto Fujita, Yuri Imaizumi, Yuuya Kasahara, et al.
    • Journal Title

      Pharmaceuticals (Basel)

      Volume: 6 Issue: 9 Pages: 1082-1093

    • DOI

      10.3390/ph6091082

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Real-time monitoring of DNA hybridization kinetics on living cell surfaces2013

    • Author(s)
      A. B. Rode, T. Endoh, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
    • Journal Title

      Chem. Commun.

      Volume: 49 Issue: 76 Pages: 8444-8446

    • DOI

      10.1039/c3cc42990c

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Translational halt during elongation caused by G-quadruplex formed by mRNA2013

    • Author(s)
      T. Endoh, Y. Kawasaki, and N. Sugimoto
    • Journal Title

      Methods

      Volume: 64 Issue: 1 Pages: 73-78

    • DOI

      10.1016/j.ymeth.2013.05.026

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study on Effects of Molecular Crowding on G-quadruplex-ligand Binding and Ligand-mediated Telomerase Inhibition2013

    • Author(s)
      Hidenobu Yaku, Takashi Murashima, Hisae Tateishi-Karimata, Shu-ichi Nakano, Daisuke Miyoshi, Naoki Sugimoto
    • Journal Title

      Methods

      Volume: 60 Issue: 1 Pages: 19-27

    • DOI

      10.1016/j.ymeth.2013.03.028

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficacy of base-modification on target binding of small molecule DNA aptamers2013

    • Author(s)
      Yuri Imaizumi, Yuuya Kasahara, et al.
    • Journal Title

      Journal of the American Chemical Society

      Volume: 135 Issue: 25 Pages: 9412-9419

    • DOI

      10.1021/ja4012222

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α2013

    • Author(s)
      T. Endoh, Y. Kawasaki, and N. Sugimoto
    • Journal Title

      Nucleic Acids Res.

      Volume: 41 Issue: 12 Pages: 6222-6231

    • DOI

      10.1093/nar/gkt286

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of artificial peptides for control of DNA G-quadruplex structures depending on protease activity toward regulation of protein expression2013

    • Author(s)
      A. Okada, K. Usui, M. Taniguchi, K. Kobayashi, and N. Sugimoto
    • Journal Title

      Peptide Sci.

      Volume: 2012 Pages: 285-286

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability2013

    • Author(s)
      T. Endoh, Y. Kawasaki, and N. Sugimoto
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 52 Issue: 21 Pages: 5522-5526

    • DOI

      10.1002/anie.201300058

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermodynamics - Hydration Relationships within Loops that Affect G-Quadruplexes under Molecular Crowding Conditions2013

    • Author(s)
      Takeshi Fujimoto, Shu-ichi Nakano, Daisuke Miyoshi, Naoki Sugimoto
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 117 Issue: 4 Pages: 963-972

    • DOI

      10.1021/jp308402v

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 私の自慢「知の系譜:挑戦するオストワルト・ギブスの末裔たち-物理化学は細胞の中へ,極限状態の生命へ」2013

    • Author(s)
      杉本直己
    • Journal Title

      化学と工業(日本化学会)

      Volume: 66(2) Pages: 125-127

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Effect of pressure on thermal stability of G-quadruplex DNA and double-stranded DNA structures2013

    • Author(s)
      S. Takahashi and N. Sugimoto
    • Journal Title

      Molecules

      Volume: 18 Issue: 11 Pages: 13297-13319

    • DOI

      10.3390/molecules181113297

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative analyses of nucleic acid stability under the molecular crowding condition induced by cosolutes2013

    • Author(s)
      H. Tateishi-Karimata, S. Nakano, and N. Sugimoto
    • Journal Title

      Curr. Protoc. Nucleic Acid Chem.

      Volume: 7 Issue: 1 Pages: 19-19

    • DOI

      10.1002/0471142700.nc0719s53

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Peptide-DNA hybrid G-quadruplex structures for regulation of protein expression2013

    • Author(s)
      A. Okada, M. Taniguchi, D. Miyoshi, and N. Sugimoto
    • Journal Title

      Peptides

      Volume: 2013 Pages: 180-180

    • Related Report
      2013 Annual Research Report
  • [Journal Article] A-T Base Pairs are More Stable Than G-C Base Pairs in a Hydrated Ionic Liquid2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 51 Issue: 6 Pages: 1416-1419

    • DOI

      10.1002/anie.201106423

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synchronized Translation for Detection of Temporal Stalling of Ribosome during Single-Turnover Translation2012

    • Author(s)
      T. Endoh, Y. Kawasaki and N. Sugimoto
    • Journal Title

      Anal. Chem.

      Volume: 84 Issue: 2 Pages: 857-861

    • DOI

      10.1021/ac202712g

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions2012

    • Author(s)
      H. Yu, Gu X. Gu, S. Nakano, D. Miyoshi and N. Sugimoto
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 134 Issue: 49 Pages: 20060-20069

    • DOI

      10.1021/ja305384c

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA tetraplex structure formation from human telomeric repeat motif (TTAGGG) : (CCCTAA) in nanocavity water pools of reverse micelles2012

    • Author(s)
      S.Pramanik, S.Nagatoishi, N.Sugimoto
    • Journal Title

      Chem.Commun.

      Volume: 48 Issue: 40 Pages: 4815-4817

    • DOI

      10.1039/c2cc30622k

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The yield of transcripts for RNA polymerase regulated by hairpin structures in nascent RNA2012

    • Author(s)
      S. Nagatoishi, R. Ono, and N. Sugimoto
    • Journal Title

      Chem. Commun.

      Volume: 48 Issue: 42 Pages: 5121-5123

    • DOI

      10.1039/c2cc31657a

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phthalocyanines : a new class of G-quadruplex-ligands with many potential applications2012

    • Author(s)
      Hidenobu Yaku, Takeshi Fujimoto, Takashi Murashima, Daisuke Miyoshi, Naoki Sugimoto
    • Journal Title

      Chemical Communications

      Volume: 48 Issue: 50 Pages: 6203-6216

    • DOI

      10.1039/c2cc31037f

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dehydration from conserved stem regions is fundamental for ligand-dependent conformational transition of the adenine-specific riboswitch2012

    • Author(s)
      V. Kumar, T. Endoh, K. Murakami and N. Sugimoto
    • Journal Title

      Chem. Commun.

      Volume: 48 Issue: 78 Pages: 9669-9784

    • DOI

      10.1039/c2cc34506d

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hydration Changes upon DNA Folding Studied by Osmotic Stress Experiments2012

    • Author(s)
      S. Nakano, D. Yamaguchi, H. Tateishi-Karimata, D. Miyoshi, and N. Sugimoto
    • Journal Title

      Biophysical Journal

      Volume: 102 Issue: 12 Pages: 2808-2817

    • DOI

      10.1016/j.bpj.2012.05.019

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dimerization of Nucleic Acid Hairpins in the Conditions Caused by Neutral Cosolutes2012

    • Author(s)
      S. Nakano, H. Hirayama, D. Miyoshi and N. Sugimoto
    • Journal Title

      J. Phys. Chem. B

      Volume: 16 Issue: 25 Pages: 7406-7415

    • DOI

      10.1021/jp302170f

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein2012

    • Author(s)
      S. Nagatoishi and N. Sugimoto
    • Journal Title

      Mol. Biosyst.

      Volume: 8 Issue: 10 Pages: 2766-2770

    • DOI

      10.1039/c2mb25234a

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Specific Binding of Anionic Porphyrin and Phthalocyanine to the DNA G-quadruplex2012

    • Author(s)
      Hidenobu Yaku, Takashi Murashima, Daisuke Miyoshi, Naoki Sugimoto
    • Journal Title

      Molecules

      Volume: 17 Issue: 9 Pages: 10586-10613

    • DOI

      10.3390/molecules170910586

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and Functional Characterization of RecG Helicase under Dilute and Molecular Crowding Conditions2012

    • Author(s)
      S. Saxena, S. Nagatoishi, D. Miyoshi and N. Sugimoto
    • Journal Title

      Journal of Nucleic Acids

      Volume: ID 392039 Pages: 392039-392039

    • DOI

      10.1155/2012/392039

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of a prognostic indicator in early-stage cancer using functionalized graphene-based peptide sensors.2012

    • Author(s)
      L. Feng, L. Wu, J. Wang, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
    • Journal Title

      Adv. Mater.

      Volume: 24 Issue: 1 Pages: 125-131

    • DOI

      10.1002/adma.201103205

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aptamer carbon nanodot sandwich used for fluorescent detection of protein2012

    • Author(s)
      Bailu Xu, Chuanqi Zhao, Weili Wei, Jinsong Ren, Daisuke Miyoshi, Naoki Sugimoto, Xiaogang Qu
    • Journal Title

      Analyst

      Volume: 137 Issue: 23 Pages: 5483-5486

    • DOI

      10.1039/c2an36174d

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of PNA-Peptides Controlling DNA G-Quadruplex Structures Depending on Protease Activity2012

    • Author(s)
      K. Usui, K. Kobayashi and N. Sugimoto
    • Journal Title

      Peptide Science

      Volume: 2011 Pages: 315-316

    • NAID

      10030204466

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 先端研究ウォッチング2012

    • Author(s)
      杉本直己
    • Journal Title

      NEWS LETTER(日本化学会バイオテクノロジー部会)

      Volume: 16 Pages: 2-11

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Rational design of a new IMP aptamer based on a TPP riboswitch and a hypoxanthine aptamer2011

    • Author(s)
      M. Tokui, T. Yamauchi, D. Miyoshi, H. Kamiya, A. Nishimura, and N. Sugimoto
    • Journal Title

      Chem. Lett.

      Volume: 40 Issue: 11 Pages: 1313-1314

    • DOI

      10.1246/cl.2011.1313

    • NAID

      130004426103

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (1): DNA G-quadruplexes Control RNA-folding and Gene Expression2015

    • Author(s)
      H. Tateishi-Karimata, T. Endoh, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (2): DNA G-triplexes Control Production of RNA Transcript2015

    • Author(s)
      R. Subramaniyam, H. Tateishi-Karimata, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (3): Regulation of Transcription by Cyclic Naphthalene Diimide of G-quadruplex DNA Binding Ligand2015

    • Author(s)
      H. Tateishi-Karimata, Y. Esaki, S. Sato, S. Takeneka, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (4): Interaction of Nucleolin with DNA and RNA G-quadruplexes2015

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (6): Binding Mechanism of G-quadruplex and Its Ligands Elucidated by Pressure Effect2015

    • Author(s)
      S. Takahashi, S. Bhowmik, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (7): Molecular Crowding Effect on Ribozyme- or Protein-based Polymerase Reactions2015

    • Author(s)
      H. Okura, S. Takahashi, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (10): Translation Suppression Mediated by Triplex Formed by 2-Aminopyridine-modified PNA and Hairpin RNA2015

    • Author(s)
      T. Endoh, E. Rozners, D. Hnedzko, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Nucleic Acids Chemistry beyond the Watson-Crick Double Helix (11): Role of Compensatory Base Pair Variation in Stem Regions of FMN Riboswitch Aptamer on Its Gene Regulation2015

    • Author(s)
      A. B. Rode, T. Endoh, and N. Sugimoto
    • Organizer
      日本化学会第95春季年会
    • Place of Presentation
      日本大学 理工学部船橋キャンパス、千葉
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structures, Interactions, and Functions of Nucleic Acids under Molecular Crowding Conditions2014

    • Author(s)
      N. Sugimoto
    • Organizer
      Asian Chemical Biology Conference (ACBC 2014)
    • Place of Presentation
      Ngee An Kongsi Auditorium, Education resource centre in NUS, Singapore
    • Year and Date
      2014-12-15 – 2014-12-17
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 核酸の非二重らせん構造に潜む重要な機能2014

    • Author(s)
      杉本直己
    • Organizer
      第14回東北大学多元物質科学研究所 研究発表会
    • Place of Presentation
      東北大学片平さくらホール、宮城
    • Year and Date
      2014-12-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 核酸四重らせん構造を特異的に安定化させる修飾DNAの開発2014

    • Author(s)
      建石寿枝, 村岡貴博, 金原数, 杉本直己
    • Organizer
      第14回東北大学多元物質科学研究所 研究発表会
    • Place of Presentation
      東北大学片平さくらホール、宮城
    • Year and Date
      2014-12-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] 核酸の挙動に及ぼす分子クラウディングと圧力の影響2014

    • Author(s)
      杉本直己, 高橋俊太郎
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島大学常三島キャンパス、徳島
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] テロメアDNA配列のP-T依存的構造変化2014

    • Author(s)
      高橋俊太郎, 杉本直己
    • Organizer
      第55回高圧討論会
    • Place of Presentation
      徳島大学常三島キャンパス、徳島
    • Year and Date
      2014-11-22 – 2014-11-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Effect of Conformational Transition Kinetics of Nascent mRNA on Co-and Post-transcriptional Translation Systems2014

    • Author(s)
      T. Endoh and N. Sugimoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Fukuoka
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Large stabilization of G-quadruplexes by tetra-ethylene glycol modified deoxythymines2014

    • Author(s)
      H. Tateishi-Karimata, T. Muraoka, K. Kinbara, P. Podbevsec, J. Plavec, and N. Sugimoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Fukuoka
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] New insights into the binding nucleolin to nucleic acids from physicochemical analysis2014

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Fukuoka
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Tuning of Riboswitch-mediated Gene Regulation via Rational Control of Aptamer Ligand Binding Properties2014

    • Author(s)
      A. B. Rode, T. Endoh, and N. Sugimoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Fukuoka
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Pressure and temperature stability diagram of human telomeric DNA2014

    • Author(s)
      S. Takahashi, S. Bhowmik, and N. Sugimoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Fukuoka
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Interesting Behaviors of Nucleic Acids with Unusual Structures2014

    • Author(s)
      T. Endoh, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
    • Organizer
      3rd Swiss-Japan Chemical Biology Symposium 2014
    • Place of Presentation
      Bern, Switzerland
    • Year and Date
      2014-10-02 – 2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] 非二重らせん構造に隠された核酸の機能を知る2014

    • Author(s)
      杉本直己
    • Organizer
      バイオ・高分子研究会 核酸を科学する
    • Place of Presentation
      にっしょうかん新館・梅松鶴、長崎
    • Year and Date
      2014-09-26 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Interesting Behaviors of Nucleic Acids under Molecular crowding conditions2014

    • Author(s)
      N. Sugimoto
    • Organizer
      Graduate School of Biostudies & iCeMS Joint Symposium “Hierarchical Dynamics of Nucleic Acids: Synergy between Structure and Function”
    • Place of Presentation
      iCeMS, Kyoto University
    • Year and Date
      2014-09-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 核酸の熱力学的挙動解析と核酸ナノマテリアルの創製2014

    • Author(s)
      杉本直己
    • Organizer
      第64回錯体化学討論会
    • Place of Presentation
      中央大学理工学部 後楽園キャンパス、東京
    • Year and Date
      2014-09-18 – 2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 高圧力で誘起されるi-motif DNAの構造安定化効果2014

    • Author(s)
      高橋俊太郎, 杉本直己
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学津島キャンパス、岡山
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] RNA-ペプチド間のアロステリック相互作用を利用した小分子検出のためのユニバーサルバイオセンサーの構築2014

    • Author(s)
      遠藤玉樹, 杉本直己
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学津島キャンパス、岡山
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA四重鎖は転写の二次情報を保持しているか?2014

    • Author(s)
      建石寿枝, 遠藤玉樹, 高橋俊太郎, 杉本直己
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学津島キャンパス、岡山
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Effects of Molecular Crowding on the Structures, Interactions, and Functions of Nucleic Acids: Beyond the Watson-Crick Double Helix2014

    • Author(s)
      S. Nakano, D. Miyoshi, and N. Sugimoto
    • Organizer
      XXI Round Table on Nucleosides, Nucleotides and Nucleic acids (IRT2014)
    • Place of Presentation
      Poznan, Poland
    • Year and Date
      2014-08-24 – 2014-08-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] Effect of pressure and molecular crowding on the stability of G-quadruplex DNA2014

    • Author(s)
      S. Takahashi and N. Sugimoto
    • Organizer
      8th International Conference on High Pressure Bioscience and Biotechnology (HPBB)
    • Place of Presentation
      Nantes, France
    • Year and Date
      2014-07-15 – 2014-07-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Thermal Stability and Application of Unusual structures of DNA and RNA, International University2014

    • Author(s)
      N. Sugimoto
    • Organizer
      The 5th International Conference on the Development of Biomedical Engineering
    • Place of Presentation
      Ho Chi Minh, Vietnam
    • Year and Date
      2014-06-16 – 2014-06-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Thermal Stability of Non-cannonical structures in Template DNA and its Effect on Transcription2014

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      Gordon Research Conference - Biopolymers
    • Place of Presentation
      Salve Regina University, USA
    • Year and Date
      2014-06-01 – 2014-06-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(47)圧力変化によるi-motif DNAの構造安定性制御2014

    • Author(s)
      高橋俊太郎, 杉本直己
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(48)圧力変化によるグアニン四重鎖と結合リガンド間の相互作用解析2014

    • Author(s)
      Sudipta Bhowmik, Shuntaro Takahashi, Tamaki Endoh,and Naoki Sugimoto
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(49) 四重鎖構造による翻訳抑制を回避する準安定な転写共役二次構造形成2014

    • Author(s)
      遠藤玉樹, 杉本直己
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(50) フラビンモノヌクレオチド認識リボスイッチのリガンド結合速度解析2014

    • Author(s)
      Ambadas B. Rode, Tamaki Endoh, and Naoki Sugimoto
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果 (51) 脂質二分子膜表面におけるDNA二重鎖及び四重鎖構造の安定性2014

    • Author(s)
      Pramanik Smritimoy, Hisae Tateishi-Karimata, and Naoki Sugimoto
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(55) テトラアルキルアンモニウムイオンによるリボザイム活性の向上2014

    • Author(s)
      中野修一, 杉本直己
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(56)アニオン性フタロシアニンによるがん細胞特異的増殖阻害2014

    • Author(s)
      夜久英信, 村嶋貴之, 三好大輔, 杉本直己
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学 東山キャンパス(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 先制医薬学における核酸の非二重らせん構造の役割2013

    • Author(s)
      杉本 直己
    • Organizer
      第23回アンチセンスシンポジウム
    • Place of Presentation
      徳島大学 大塚講堂(徳島県、徳島市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 擬似細胞環境下での DNA 四重鎖構造の熱安定性に対する圧力効果2013

    • Author(s)
      高橋俊太郎, 杉本直己
    • Organizer
      第54回高圧討論会
    • Place of Presentation
      朱鷲メッセ新潟コンベンションセンター(新潟県、新潟市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] FRET-based detection of G-quadruplexes in the 5’-UTR of cancer related mRNAs2013

    • Author(s)
      R. Maeda, V. Gabelica, H. Yaku, T. Murashima, N. Sugimoto, D. Miyoshi
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Thermodynamics of non-canonical DNA structures in the presence of polylysine copolymers with hydrophilic graft chain2013

    • Author(s)
      D. Miyoshi, A. Maruyama, Y. Ueda, N. Shimada, S. Nakano, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] G-quadruplex-based drug delivery carrier in response to target mRNA2013

    • Author(s)
      H. Yaku, T. Murashima, D. Miyoshi, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Thermodynamic analyses reveal the G-quadruplex stability is reduced at phospholipid membrane surface2013

    • Author(s)
      S. Pramanik, H. Tateishi-Karimata, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Effect of nucleation site on DNA hybridization kinetics at living cell surface2013

    • Author(s)
      A. B. Rode, T. Endoh, H. Tateishi-Karimata, S. Takahashi, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Regulation of ribosomal frameshift by RNA interacting ligand in cells2013

    • Author(s)
      T. Endoh, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] New insights into transcription fidelity: Stability of non-canonical structures in template DNA regulates transcription arrest, pause and slippage2013

    • Author(s)
      H. Tateishi-Karimata, N. Sugimoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University, Building16 (Celest Hall),(Yokohama, Kanagawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] How Do Non-canonical Structures in Template DNA Affect Transcription?2013

    • Author(s)
      Naoki Sugimoto and Hisae Tateishi-Karimata
    • Organizer
      Trends in Biomolecular Structure from Chemistry to Function
    • Place of Presentation
      Ljubljana, Slovenia
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 高圧下の核酸構造安定性への分子クラウディングの影響2013

    • Author(s)
      高橋 俊太郎, 杉本 直己
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] RNA四重らせん構造を特異的に安定化する細胞浸透圧調整分子2013

    • Author(s)
      三好 大輔, 丸山 厚, 真野 美津紀, 上田 侑美, 前田 龍一, 中野 修一, 杉本 直己
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] FRETを利用したmRNA四重らせん構造の特異的検出2013

    • Author(s)
      前田 龍一, Gabelica Valérie, 夜久英信, 村嶋貴之,杉本直己, 三好大輔
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 水和イオン液体中におけるDNAの非標準構造の安定化2013

    • Author(s)
      建石 寿枝,中野美紀,杉本 直己
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分子クラウディング環境におけるRNA相互作用の解明と予測に向けた取り組み2013

    • Author(s)
      中野修一、平山英伸、三好大輔、杉本直己
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 新生RNAの転写共役フォールディングを利用したRNA構造スイッチの設計2013

    • Author(s)
      遠藤 玉樹, 杉本 直己
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学 豊田講堂・野依学術交流館(愛知県、名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Quantitative analyses of the transcriptional elongation regulated by non-canonical DNA structures2013

    • Author(s)
      Naoki Sugimoto and Hisae Tateishi-Karimata
    • Organizer
      Self-Assembly of Biopolymers
    • Place of Presentation
      Cambridge, UK
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular Crowding Effects on Functions of G-Quadruplex Ligands2013

    • Author(s)
      H. Yaku, T. Murashima, H. Tateishi-Karimata, S. Nakano, N. Sugimoto and D. Miyoshi
    • Organizer
      4th International Meeting on G-quadruplex Nucleic Acids
    • Place of Presentation
      Nanyang Technological University, Singapore
    • Related Report
      2013 Annual Research Report
  • [Presentation] Peptide-DNA hybrid G-quadruplex structures for regulation of protein expression depending on protease activity2013

    • Author(s)
      A. Okada, M. Taniguchi, K. Usui, nd N. Sugimoto
    • Organizer
      The 23rd American Peptide Symposium
    • Place of Presentation
      the Hilton Waikoloa Village, Hawaii, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Biomolecule-Ligand Noncovalent Complexes: Mass Spectrometry as a Key to Interpret Solution Fluorescence Data2013

    • Author(s)
      D. Miyoshi, R. Maeda, T. Fujimoto, H. Yaku, T. Murashima, N.Sugimoto, A. Marchand, F. Rosu and V. Gabelica
    • Organizer
      61st ASMS (Amewrican Society for Mass Spectrometry) Conference
    • Place of Presentation
      Minneapolis, Minnesota, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Suppresion of gene expression by G-quadruplexes in open reading frames of mRNA2013

    • Author(s)
      N. Sugimoto and T. Endoh
    • Organizer
      Gordon Research Conferene Nucleosides, Nucoltides & Oligonucleotides
    • Place of Presentation
      Salve Regina University, Newport, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Pressure effect on the folding of G-quadruplex under the crowding conditions2013

    • Author(s)
      N. Sugimoto and S. Takahashi
    • Organizer
      Gordon Research Conference Synthetic Biology
    • Place of Presentation
      West Dover, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Translation regulated by non-canonical RNA structures2013

    • Author(s)
      N. Sugimoto and T. Endoh
    • Organizer
      Gordon Research Conference (Stochastic physics in Biology)
    • Place of Presentation
      Four Points Sheraton (USA)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of Advanced DNA Sensors Based on The Stability Change of DNA Base Pairs in a Hydrated Ionic Liquid2013

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(38) 高圧下における核酸四重鎖の熱安定性2013

    • Author(s)
      高橋俊太郎・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(39) フーグスティーン塩基対の安定性に及ぼす水和イオン液体の効果の定量的解析2013

    • Author(s)
      中村研・建石寿枝・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(40) DNA塩基対の安定性に及ぼすコリンイオンの効果の分子動力学計算による解析2013

    • Author(s)
      中野美紀・建石寿枝・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(41) 脂質二重膜によって形成される擬似細胞内環境が四重鎖構造形成に及ぼす影響2013

    • Author(s)
      Smritimoy, Pramanik・建石寿枝・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(42) 鋳型DNA中の非標準構造によって制御される転写機構の定量的解析2013

    • Author(s)
      建石寿枝・磯野伸・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(43) チオフラビンTによる核酸四重らせん構造の高感度検出2013

    • Author(s)
      前田龍一・Gabelica, Valerie・藤本健史・夜久英信・村嶋貴之・杉本直己・三好大輔
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(44) 疑似細胞環境において長鎖テロメアDNAが形成する数珠状構造2013

    • Author(s)
      三好大輔・Yu, Haiqing・Gu, Xiaobo・中野修一・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(45) 生細胞膜表面におけるDNA塩基対形成の速度評価2013

    • Author(s)
      Rode, Ambadas・遠藤玉樹・高橋俊太郎・建石寿枝・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生命分子の挙動に及ぼす分子環境の効果(46) mRNA中のRNA四重鎖構造を介した翻訳フレームシフト2013

    • Author(s)
      遠藤玉樹・中村研・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Calpain活性によりDNA 四重鎖構造を変化させる設計ペプチド2013

    • Author(s)
      岡田亜梨沙・臼井健二・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 薬物包摂人工核酸アプタマー:修飾基が結合特性に及ぼす効果2013

    • Author(s)
      今泉友里・北爪峻輔・藤田博仁・笠原勇矢・尾崎広明・桑原正靖・遠藤玉樹・杉本直己
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Y-box binding protein 1(YB-1)の物性とDNA結合メカニズムの解析2013

    • Author(s)
      田邊裕美子・長門石曉・西方敬人・杉本直己・津本浩平
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 (滋賀)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Quantitative analyses of the translation regulated by non-canonical RNA structures2012

    • Author(s)
      N. Sugimoto
    • Organizer
      Ribosome-associated protein folding: Translation, auxiliary factors, and translocation workshop
    • Place of Presentation
      Ecole Polytechnique Federale de Lausanne; EPFL (Switzerland)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A-T base pairs are more stable than G-C base pairs in the hydrated ionic liquid of choline dihydrogen phosphate2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      Gordon Research Conference (Biopolymers)
    • Place of Presentation
      Salve Regina University (USA)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Method for the stabilization of Hoogsteen base pairs by a hydrated ionic liquid2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      Gordon Research Conference (Bioinspired Materials)
    • Place of Presentation
      Davidson College (USA)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Regulation of the DNA Stability using a Hydrated Ionic Liquid toward the Development of New DNA Sensing Systems2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      The Second Asian Chemical Biology Conferences (ACBC2012)
    • Place of Presentation
      Southern Beach Hotel (沖縄)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Thermodynamics and hydration effects on the interaction between DNA2012

    • Author(s)
      S. Nagatoishi and N. Sugimoto
    • Organizer
      The Second Asian Chemical Biology Conference, ACBC201
    • Place of Presentation
      Southern Beach Hotel (沖縄)
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA Stability In A Hydrated Ionic Liquid2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      XXIRT-20th International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Centre Mont-Royal (Canada)
    • Related Report
      2012 Annual Research Report
  • [Presentation] PCR-free telomerase assay with cycling probe technology2012

    • Author(s)
      H. Yaku, T. Murashima, D. Miyoshi and N. Sugimoto
    • Organizer
      XXIRT-20th International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Centre Mont-Royal (Canada)
    • Related Report
      2012 Annual Research Report
  • [Presentation] T Thioflavin-T as human telomeric G-quadruplex probe2012

    • Author(s)
      D. Miyoshi, V. Gabelica, R. Maeda, T. Fujimoto, H. Yaku, T. Murashima and N. Sugimoto
    • Organizer
      XXIRT-20th International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Centre Mont-Royal (Canada)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of DNA structure on DNA adsorption and desorption on GO2012

    • Author(s)
      T. Fujimoto, S. Nakano, N. Sugimoto and D. Miyoshi
    • Organizer
      XXIRT-20th International Roundtable on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Centre Mont-Royal (Canada)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Quantitative analysis for the DNA stability toward the development of new functional materials2012

    • Author(s)
      N. Sugimoto, H. Yaku, T. Murashima D. Miyoshi, S. Nakano T. Endoh and H. Tateishi-Karimata
    • Organizer
      4th EuCheMS Chemistry Congress
    • Place of Presentation
      Prague Congress Centre (Czech Republic)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 機能性核酸の謎に迫る2012

    • Author(s)
      杉本直己
    • Organizer
      第52回 生物物理若手の会・夏の学校
    • Place of Presentation
      支笏湖ユースホステル (北海道)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Translational halts caused by non-canonical RNA structures in open reading frames2012

    • Author(s)
      T. Endoh and N. Sugimoto
    • Organizer
      Riboregulation International Conference
    • Place of Presentation
      Fudan University (China)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Cation and solvent effects on G-quadruplex nucleic acid structure: from the solution to the gas phase2012

    • Author(s)
      V. Gabelica1, A. Marchand, R. Ferreira, F. Rosu1, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto and E. De Pauw
    • Organizer
      19th International Mass Spectroscopy Conference
    • Place of Presentation
      国立京都国際会館 (京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 合成途中のタンパク質が及ぼす翻訳終結速度への影響2012

    • Author(s)
      高橋俊太郎・杉本直己・岡畑恵雄
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学 (北海道)
    • Related Report
      2012 Annual Research Report
  • [Presentation] RNAの構造変化および熱安定性予測に基づく蛍光・発光リボスイッチの設計2012

    • Author(s)
      遠藤玉樹・杉本直己
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学 (北海道)
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAのグラフェン酸化物からの脱着機構の検討2012

    • Author(s)
      藤本健史・中野修一・杉本直己・三好大輔
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学 (北海道)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 水和イオン液体中におけるワトソン・クリック及びフーグスティーン塩基対安定化の定量的解析2012

    • Author(s)
      建石寿枝・中野美紀・杉本直己
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学 (北海道)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新規DNAセンサーの開発を目指した水和イオン液体中におけるDNA構造の定量的解析2012

    • Author(s)
      建石寿枝・杉本直己
    • Organizer
      第61回高分子討論会
    • Place of Presentation
      名古屋工業大学 (名古屋)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Effects of a thymine residue deletion in TT loops on thrombin-TBA recognition interactions: a crystallographic study2012

    • Author(s)
      I. R. Kraussa, A Picaa, A. Merlinoa, S. Nagatoishi, N. Sugimoto, L, Mazzarella and F. Sica
    • Organizer
      Conformational diversity and applications of G-quadruplexes
    • Place of Presentation
      Hotel Antemare(Spain)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核酸医薬品開発に向けた細胞内環境における核酸の分子設計2012

    • Author(s)
      杉本直己
    • Organizer
      日本機械学会 第25回計算力学講演会(CMDS2012)
    • Place of Presentation
      甲南大学 (神戸)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Stabilization Effect of Non-canonical Structures of Nucleic Acids on the Transcription and Translation2012

    • Author(s)
      N. Sugimoto, T. Endoh, H. Tateishi-Karimata and S. Takahashi
    • Organizer
      17th Malaysian Chemical Congress (17MCC)
    • Place of Presentation
      Putra World Trade Center (Malaysia)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 核酸の構造安定性に対する圧力効果2012

    • Author(s)
      高橋俊太郎・杉本直己
    • Organizer
      第53回高圧討論会
    • Place of Presentation
      大阪大学 (大阪)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Production of truncated human estrogen receptor alpha (ERa) depending on the thermostability of quadruplex in the open reading frame of the ERa mRNA2012

    • Author(s)
      T. Endoh and N. Sugimoto
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学 (名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Thermodynamics of DNA structure formations at the phospholipid membrane2012

    • Author(s)
      P. Smritimoy, H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学 (名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Large stabilization of Hoogsteen base pairs in a hydrated ionic liquid2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学 (名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Molecular crowding study using nucleotide analogs2012

    • Author(s)
      D. Yamaguchi, H. Oka, M. Fujii, N. Sugimoto and S. Nakano
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学 (名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Regulation of transcription by the conformation of nascent RNA chain2012

    • Author(s)
      S. Takahashi, S. Nagatoishi and N. Sugimoto
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] The Regulation Mechanism of Gene Expression in Translation Termination2012

    • Author(s)
      S. Takahashi, N. Sugimoto and Y. Okahata
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of New DNA Sensors Based on Unique Interactions between Hydrated Ionic Liquids and DNAs2012

    • Author(s)
      H. Tateishi-Karimata and N. Sugimoto
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Suppression of Gene Expression Depending on Stability and Position of G-Quadruplexes in Open Reading Frame2012

    • Author(s)
      T. Endoh and N. Sugimoto
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Use of Poly(ethylene glycol) for the Study of Nucleic Acid Interactions2012

    • Author(s)
      S. Nakano, H. Hirayama, Y. Kitagawa, D. Yamaguchi, H. Sangen, D. Miyoshi and N. Sugimoto
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Molecular Crowding Effects on DNA G-Quadruplex2012

    • Author(s)
      D. Miyoshi, T. Fujimoto, S. Nakano and N. Sugimoto
    • Organizer
      The First International Symposium on Biofunctional Chemistry (ISBC 2012)
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Influence of non-canonical RNA structures in open reading frames on translation2012

    • Author(s)
      T. Endoh and N. Sugimoto
    • Organizer
      Cell Symposia: Functional RNAs
    • Place of Presentation
      Melia Sitges Hotel (Spain)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核酸の非二重らせん構造の生命化学における役割

    • Author(s)
      杉本 直己
    • Organizer
      ヘテロ原子部会第2回懇話会
    • Place of Presentation
      アスビオファーマ(兵庫県、神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 核酸の非二重らせん構造はどのような役割を担っているのか?

    • Author(s)
      杉本直己
    • Organizer
      第20回クロマトグラフィーシンポジウム
    • Place of Presentation
      神戸大学百年記念館 六甲ホール(兵庫県、神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] mRNA翻訳反応のリアルタイム観察法の開発

    • Author(s)
      高橋俊太郎・杉本直己
    • Organizer
      BIA Symposium 2012
    • Place of Presentation
      明治記念館 (東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核酸を活用したバイオセンシング

    • Author(s)
      杉本直己
    • Organizer
      東京農工大学招待講演
    • Place of Presentation
      東京農工大学 (東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 産学連携の成功事例と将来展望

    • Author(s)
      杉本直己
    • Organizer
      甲南大学同窓会
    • Place of Presentation
      甲南大学 (神戸)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 脱二重らせんの発想から生まれる新しい機能性核酸の発見

    • Author(s)
      杉本直己
    • Organizer
      バイオフォーラム
    • Place of Presentation
      京都産業大学 (京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 核酸医薬品創製のためのスパコンへの期待

    • Author(s)
      杉本直己
    • Organizer
      スーパ ーコンピュータ「京」 と創薬・医療の産学連携セミナー
    • Place of Presentation
      梅田センタービル (大阪)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 脱ワトソン・クリック二重らせん

    • Author(s)
      杉本直己
    • Organizer
      宮崎大学講演会
    • Place of Presentation
      宮崎大学 (宮崎)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 脱ワトソン・クリック二重らせん

    • Author(s)
      杉本直己
    • Organizer
      岡山大学講演会
    • Place of Presentation
      岡山大学 (岡山)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 身近なDNA-うま味と健康-

    • Author(s)
      杉本直己
    • Organizer
      東部光洋会講演会
    • Place of Presentation
      銀座東武ホテル (東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] 高圧力下での核酸の化学的挙動 (CSJカレントレビュー 極限環境の生体分子 過酷な環境下での機能を科学する)2014

    • Author(s)
      高橋俊太郎、杉本直己
    • Total Pages
      9
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Book] Effect of Ionic Liquid and Liposomes on the Structure, Stability, and Function of Nucleic Acids (Chemical Biology of Nucleic Acids: Fundamentals and Clinical Applications)2014

    • Author(s)
      N. Sugimoto
    • Total Pages
      18
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] 細胞定量解析の最前線-ライフサーベイヤ構築に向けて-(シングル解析を目指した機能性核酸の構築)2012

    • Author(s)
      杉本直己・三好大輔
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Annual Research Report
  • [Book] 新しい薬学辞典(A12 核酸医薬)2012

    • Author(s)
      長門石曉・杉本直己
    • Publisher
      朝倉書店
    • Related Report
      2012 Annual Research Report
  • [Book] CSJカレントレビュー ここまで進んだバイオセンシング・イメージング 1分子から細胞,脳まで(細胞内核酸化学)2012

    • Author(s)
      遠藤玉樹・杉本直己
    • Publisher
      化学同人
    • Related Report
      2012 Annual Research Report
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Published: 2013-05-15   Modified: 2019-07-29  

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