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Comprehensive analysis of molecular interaction of ferredoxin and enzymes involved in redox metabolisms in chloroplast

Research Project

Project/Area Number 24370021
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionOsaka University

Principal Investigator

Hase Toshiharu  大阪大学, たんぱく質研究所, 教授 (00127276)

Co-Investigator(Kenkyū-buntansha) IKEGAMI Takahisa  横浜市立大学, 生命医学研究科, 教授 (20283939)
Co-Investigator(Renkei-kenkyūsha) KURISU Genji  大阪大学, 蛋白質研究所, 教授 (90294131)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2015: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Keywords葉緑体 / レドックス代謝 / フェレドキシン / 酸化還元酵素 / 分子間相互作用
Outline of Final Research Achievements

We have been studying electron transfer between Fd and these enzymes by X-ray crystallography, NMR analysis and isothermal calorimetry to obtain an insight into electron partitioning in chloroplasts. In all cases, their protein-protein interactions are not so strong with Kd values around micro-molar to several tens micro-molar; a set of positively charged residues of the partner enzymes is closed to acidic residues of Fd in a spatially matching manner to produce an electrostatic interaction force. Whole acidic surface of Fd is not utilized for complex formation with partner enzymes and the interaction region appears to be at least partly unique for each enzyme. This topological variety of the molecular recognition between Fd and partner enzymes would be significant for function of Fd as a hub protein in a network of redox metabolisms.We further found the intermolecular interaction of some Fd-dependent enzymes with Fd varied when each enzyme was bound to their substrate.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report

Research Products

(32 results)

All 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (2 results) Journal Article (12 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 12 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (18 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results)

  • [Int'l Joint Research] 国立農業研究所(フランス)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] ボッフム大学(ドイツ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Impact of the disruption of ASN3 encoding asparagine synthetase on Arabidopsis development.2016

    • Author(s)
      1.Gaufichon L., Marmagne A.,Yoneyama T., Hase T., Clément G., Trassaert M., Xu X., Shakiebaei M., Najihi A., and Suzuki A
    • Journal Title

      Agronomy

      Volume: 6 Pages: 12-12

    • DOI

      10.3390/agronomy6010012

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural and mutational studies of an electron transfer complex of maize sulfite reductase and ferredoxin2016

    • Author(s)
      Ju Yaen Kim, Masato Nakayama, Hiroshi Toyota, Genji Kurisu, Toshiharu Hase
    • Journal Title

      J. Biochemistry

      Volume: 未定

    • DOI

      10.1093/jb/mvw016

    • NAID

      40020914036

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Purification and characterization of recombinant sugarcane sucrose phosphate synthase expressed in E. coli and insect Sf9 cells: An importance of the N-terminal domain for an allosteric regulatory property2016

    • Author(s)
      Sawitri W.D., Narita H., Ishizaka-Ikeda E., Sugiharto B., Hase T., and Nakagawa A
    • Journal Title

      J. Biochemistry

      Volume: in press

    • DOI

      10.1093/jb/mvw004

    • NAID

      40020869410

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin2015

    • Author(s)
      Mutoh Risa, Muraki Norifumi, Shinmura Kanako, Kubota-Kawai Hisako, Lee Young-Ho, Marc M. Nowaczyk, Matthias Rögner, Hase Toshiharu, Ikegami Takahisa, Kurisu Genji
    • Journal Title

      Biochemistry

      Volume: 54 Pages: 6052-6061

    • DOI

      10.1021/acs.biochem.5b00601

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 15N-tracing studies on in vivo reactions of ferredoxin-dependent nitrite reductase and glutamate synthase using reconstituted electron donation systems2015

    • Author(s)
      Yoneyama T., Fujimori T., Yanagisawa S., Hase T., and Suzuki A.
    • Journal Title

      Plant Cell Physiol

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple Complexes of Nitrogen Assimilatory Enzymes in Spinach Chloroplasts: Possible Mechanisms for the Regulation of Enzyme Function2014

    • Author(s)
      Kimata-Ariga Y. and Hase T
    • Journal Title

      PLoS ONE

      Volume: 9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Design and synthesis of chalcon derivatives as inhibitors of the ferredoxin – ferredoxin-NADP+ reductase interaction of Plasmodium falciparum2014

    • Author(s)
      Suwito H., Jumina, Mustofa, Pudjiastuti P., Fanani M.Z., Kimata-Ariga,Y., Kathira R., Kawakami T., Fujiwara T., Hase, T., Sirat H.M., and Puspaningsih N.N.T.
    • Journal Title

      Molecules

      Volume: 19 Pages: 21473-21488

    • DOI

      10.3390/molecules191221473

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Concentration-dependent oligomerization of cross-linked complexes between ferredoxin and ferredoxin-NADP+ reductase2013

    • Author(s)
      Yoko Kimata-Ariga, Hisako Kubota-Kawai, Young-Ho Lee, Norifumi Muraki, Takahisa Ikegami, Genji Kurisu, Toshiharu Hase
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: in press Pages: 867-872

    • DOI

      10.1016/j.bbrc.2013.04.033

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis thaliana ASN2 encoding asparagine synthetase is involved in the control of nitrogen assimilation and export during vegetative growth2013

    • Author(s)
      Gaufichon L.
    • Journal Title

      Plant Cell Environ

      Volume: 36 Pages: 328-342

    • DOI

      10.1111/j.1365-3040.2012.02576.x

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Concentration-dependent oligomerization of cross-linked complexes between nごrredoxin and ferredoxin-NADP+ reductase2013

    • Author(s)
      Kimala-Ariga Y.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: (in press)

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cloning, expression, crystallization and preliminary X-ray studies of the ferredoxin-NAD(P)+reductase from the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2012

    • Author(s)
      Liauw P, Mashiba T, Kopczak M, Wiegand K, Muraki N, Kubota H, Kawano Y, Ikeuchi M, Hase T, Rogner M, Kurisu G.
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun

      Volume: 68 Pages: 1048-1051

    • DOI

      10.1107/s1744309112031910

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] N-terminal structure of maize ferredoxin : NADP+ reductase determines recruitment into different thylakoid membrane complexes.2012

    • Author(s)
      Twachtmann M, Altmann B, Muraki N, Voss l, Okutani S, Kurisu G, Hase T, Hanke GT.
    • Journal Title

      Plant Cell

      Volume: 24(7) Pages: 2079-2991

    • DOI

      10.1105/tpc.111.094532

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 植物FdとFd依存性酵素群の複合体構造からみた鉄硫黄蛋白質の電子伝達特性2015

    • Author(s)
      長谷俊治、金宙妍、筑摩悠太郎、有賀(木股)洋子
    • Organizer
      BMB2051
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Modulation of protein-protein interaction of Fd and Fd-dependent enzymes2015

    • Author(s)
      Toshiharu Hase, Ju Yaen Kim, Yutaro Chikuma and Yoko Ariga
    • Organizer
      第68回山田コンファレンス
    • Place of Presentation
      奈良市、公会堂
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Our understanding of molecular mechanism of protein-protein interaction between Fd and redox enzymes in plant photosyntdhesis2015

    • Author(s)
      Toshiharu Hase
    • Organizer
      Molecular and Cellular Life Sciences: Infectious deseases, biochemistry and structrual biology, MCLS2015
    • Place of Presentation
      Surabaya, Indonesia
    • Year and Date
      2015-05-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] New factor modulating activity of ferredoxin:NADPH reductase in chloroplast2015

    • Author(s)
      Chikuma Y, Ariga Y, Hanke GT, Hase T
    • Organizer
      第56回日本植物生化学会
    • Place of Presentation
      東京農業大学、世田谷キャンパス
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Study on FdC2, a ferredoxin homologue ubiquitously present in oxygenic photosynthetic organisms2015

    • Author(s)
      OK, Ariga Y, Hanke GT, Hase T
    • Organizer
      第56回日本植物生化学会
    • Place of Presentation
      東京農業大学、世田谷キャンパス
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural studies on the transient electron transfer complex between cyanobacterial Fd and Fd-GOGAT2014

    • Author(s)
      新村 佳奈子, 村木 則文, 吉田 綾子1, 長谷 俊治,栗栖 源嗣
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Ferredoxinとferredoxin-NADP+ reductaseの複合体形成における疎水性相互作用の役割2014

    • Author(s)
      木下 岬, 李 映昊, 後藤 祐児, 長谷 俊治, 有賀(木股) 洋子
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 葉緑体における窒素同化系酵素群の高分子量複合体形成とそのダイナミクス2014

    • Author(s)
      有賀(木股) 洋子, 長谷 俊治
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒトマラリア原虫のフェレドキシンとフェレドキシン:NADP+酸化還元酵素間の相互作用について2014

    • Author(s)
      湯浅 翔平, 長谷 俊治, 有賀(木股) 洋子
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Study on a hydrophobic and non-charged interaction between sulfite reductase and ferredoxin2014

    • Author(s)
      金 宙妍, 弘中 祐介, 李 映昊, 栗栖 源嗣, 長谷 俊治
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structure of an electron transfer complex of ferredoxin and sulfite reductase and analysis of their molecular interaction2014

    • Author(s)
      Ju Yaen Kim, Takahisa Ikegami, Yuji Goto, Toshiharu Hase and Young-Ho Lee
    • Organizer
      9th international workshop, Sulfur metabolism in plants
    • Place of Presentation
      Freiburg, Germany
    • Year and Date
      2014-04-14 – 2014-04-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] ピリジンヌクレオチドにより調整されるフェレドキシンとフェレドキシン:NADP+還元酵素の分子間相互作用について2013

    • Author(s)
      筑摩悠太郎、李映昊、有賀洋子、池上貴久、後藤祐児、長谷俊治
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 植物グルタミン合成酵素のグルタミン酸認識と基質類縁体の阻害力に異なる影響をもたらす部位特異的変異酵素について2013

    • Author(s)
      尾崎健、楠木正巳、中川敦史、長谷俊治
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] Intermolecular electrostatic intereaction between ferredoxin and sulfite reductase studied by isothermal titration calorimetry and nuclear magnetic resonace2013

    • Author(s)
      J.Y.Kim, Y-H. Lee, T.Ikegami, G.Kurisu, Y.Goto, T.Hase
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 植物亜硫酸還元酵素に見出されるTyr-Cys分子内架橋の構造機能相関について2012

    • Author(s)
      藤田和也
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] フェレドキシンと亜硫酸還元酵素の電子伝達複合体の構造と分子間相互作用の解析2012

    • Author(s)
      金宙妍
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] シアノバクテリア亜硝酸還元酵素の大腸菌発現系で生じる2成分の組換え酵素について2012

    • Author(s)
      弘中祐介
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] フェレドキシンとその依存性酵素SiRtoFNRへの電子伝達様式の差異を生み出す43Serの1アミノ酸置換による解析2012

    • Author(s)
      木下岬
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-15
    • Related Report
      2012 Annual Research Report

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Published: 2012-04-23   Modified: 2019-07-29  

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