Establishing a novel method of molecular phylogenetic analysis based on comprehensive sequence data from a single gene to the whole genome
| Project/Area Number |
24370033
|
|---|
| Research Category |
Grant-in-Aid for Scientific Research (B)
|
| Allocation Type | Partial Multi-year Fund |
|---|
| Section | 一般 |
|---|
| Research Field |
Biodiversity/Systematics
|
|---|
| Research Institution | Hokkaido University |
|---|
Principal Investigator |
TODA Masanori 北海道大学, 総合博物館, 資料部研究員 (40113592)
|
|---|
| Co-Investigator(Kenkyū-buntansha) |
WATADA Masayoshi 愛媛大学, 大学院理工学研究科, 教授 (00210881)
TAMURA Koichiro 首都大学東京, 大学院理工学研究科, 教授 (00254144)
KATOH Toru 北海道大学, 大学院理学研究院, 助教 (80374198)
|
|---|
| Project Period (FY) |
2012-04-01 – 2016-03-31
|
| Project Status |
Completed (Fiscal Year 2015)
|
| Budget Amount *help |
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2013: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2012: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
|
|---|
| Keywords | 系統推定法 / ショウジョウバエ / トランスクリプトーム / ゲノム / 網羅的分子系統樹 / PCRプライマー / モデル生物 / 分類学 / 系統 / ショウジョウバエ科 / 100遺伝子 / 国際情報交換 / 中国：英国 / cDNA / 中国：米国 / 中国:米国 |
|---|
| Outline of Final Research Achievements |
We developed a novel method of molecular phylogenetic analysis that enables us to employ comprehensive data of DNA sequences of various genes in the skeleton framework of whole genome sequences, and applied it to the family Drosophilidae as a model group of organisms. The inferred phylogeny was highly resolved, corroborating the efficiency of the novel methodology. Especially, as to the largest genus Drosophila of which phylogeny has not fully been resolved, several important new findings have been brought, which will lead to fundamental changes in the framework of taxonomic and evolutionary studies on the Drosophilidae.
|
Report
(5 results)
Research Products
(41 results)
-
-
-
-
-
[Journal Article] Taxonomy of the Colocasiomyia gigantea species group (Diptera, Drosophilidae), with descriptions of four new species from Yunnan, China.2014
Author(s)
Li, N.-n., Toda, M. J., Fu, Z., Chen, J.-m., Li, S.-h. & Gao, J.-j.
-
Journal Title
ZooKeys
Volume: 406
Pages: 41-64
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
-
-
-
[Journal Article] Colocasiomyia (Diptera: Drosophilidae) revised phylogenetically, with a new species group having peculiar life cycles on monsteroid (Araceae) host plants.2013
Author(s)
Fartyal, R. S., Gao, J.-j., Toda, M. J., Hu, Y.-g., Takenaka Takano, K., Suwito, A., Katoh, T., Takigahira, T. & Yin, J.-t.
-
Journal Title
Systematic Entomology
Volume: 38
Issue: 4
Pages: 763-782
DOI
Related Report
Peer Reviewed
-
-
-
[Journal Article] Courtship patterns in the Drosophila montium species subgroup: repeated loss of precopulatory courtship?2013
Author(s)
Chen, C.C., Watada, M., Miyake, H., Kotoh, T.K., Sun, Z., Li, Y.F., Ritchie, M.G. & Wen, S.Y.
-
Journal Title
Zoological Science
Volume: 30
Issue: 12
Pages: 1056-1062
DOI
NAID
Related Report
Peer Reviewed
-
-
-
-
-
[Presentation] MEGA7による分子系統解析2015
Author(s)
田村浩一郎
Organizer
第196回農林交流センターワークショップ
Place of Presentation
農業環境技術研究所（茨城県・つくば市）
Year and Date
2015-10-29
Related Report
Invited
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
