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Medicinal chemical study by the three-dimensional structural diversity-oriented strategy based on the characteristic steric and stereoelectronic features of cyclopropane

Research Project

Project/Area Number 24390023
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Drug development chemistry
Research InstitutionHokkaido University

Principal Investigator

SHUTO Satoshi  北海道大学, 大学院薬学研究院, 教授 (70241346)

Co-Investigator(Kenkyū-buntansha) FUKUDA Hayato  北海道大学, 大学院薬学研究院, 助教 (30434450)
有澤 光弘  北海道大学, 大学院・薬学研究院, 准教授 (40312962)
Co-Investigator(Renkei-kenkyūsha) MINAMI Masabumi  北海道大学, 大学院薬学研究院, 教授 (20243040)
HIGASHIDA Haruhiro  金沢大学, 子どものこころの発達研究センター, 特任教授 (30093066)
HIROKAWA Takatugu  国立研究開発法人産業技術総合研究所, 創薬分子プロファイリング研究センター, 分子シミュレーションチームチーム長 (20357867)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2014: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2013: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2012: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywordsシクロプロパン / 配座制御 / 三次元的多様性 / 分子設計 / BGT-1 阻害剤 / プロテアソーム阻害剤 / BASE阻害剤
Outline of Final Research Achievements

Cyclopropane is very effective for conformational restriction of compounds due to the characteristic steric and stereoelectronic features, which are sic/trans-restriction, cyclopropylic strain, and bisected conformational preference. We devised the three-dimensional structural diversity-oriented conformational restriction strategy based on the characteristic features of cyclopropane, by which a variety of conformationally restricted analogs of conformationally flexible biologically active prototype compounds were designed and synthesized. Thus, we successfully identified highly potent compounds, which are a GABA transporter subtype BGT-1 inhibitor, proteasome inhibitors, and β-secretase (BASE) inhibitors.

Report

(4 results)
  • 2015 Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report

Research Products

(36 results)

All 2015 2014 2013 2012

All Journal Article (29 results) (of which Peer Reviewed: 29 results,  Acknowledgement Compliant: 8 results,  Open Access: 6 results) Presentation (5 results) (of which Invited: 1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Lipo-oxytocin-1, A Novel Oxytocin Analog Conjugated with Two Palmitoyl Groups, Has Long-lasting Effects on Anxiety-related Behavior and Social Avoidance in CD157 Knockout Mice.2015

    • Author(s)
      A. Mizuno, S. M. Cherepanov, Y. Kikuchi, A. Fakhrul, S. Akther, K. Deguchi, T. Yoshihara, K. Ishihara, S. Shuto , H. Higashida
    • Journal Title

      Brain Sci.

      Volume: 5 Pages: 3-13

    • DOI

      10.3390/brainsci5010003

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determination of ω-6 and ω-3 PUFA metabolites in human urine samples using UPLC/MS/MS.2015

    • Author(s)
      A. Sasaki, H. Fukuda, N. Shiida, N. Tanaka, A. Furugen, J. Ogura, S. Shuto, N. Mano, H. Yamaguchi
    • Journal Title

      Analytical and Bioanalytical Chemistry

      Volume: 407 Pages: 1625-1639

    • DOI

      10.1007/s00216-014-8412-5

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of 8-Aminoadenosine Derivatives as a New Class of Human Concentrative Nucleoside Transporter 2 Inhibitors.2015

    • Author(s)
      K. Tatani, M. Hiratochi, Y. Nonaka, M. Isaji, S. Shuto
    • Journal Title

      ACS Med. Chem. Lett

      Volume: 6 Pages: 244-248

    • DOI

      10.1021/ml500343r

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nickel-Catalyzed Suzuki-Miyaura Coupling of a Tertiary Iodocyclopropane with Wide Boronic Acid Substrate Scope: Coupling Reaction Outcome Depends on Radical Species Stability2015

    • Author(s)
      Keisuke Yotsuji, Naoyuki Hoshiya, Takaaki Kobayashi, Hayato Fukuda, Hiroshi Abe, Mitsuhiro Arisawa and Satoshi Shuto
    • Journal Title

      Advanced Synthesis & Catalysis

      Volume: 357 Pages: 1022-1028

    • DOI

      10.1002/adsc.201401000

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rational hopping of a peptidic scaffold into non-peptidic scaffolds: structurally novel potent proteasome inhibitors derived from a natural product, belactosin A.2014

    • Author(s)
      S. Kawamura, Y. Unno, T. Hirokawa, A. Asai, M. Arisawa, S. Shuto
    • Journal Title

      Chemical Communications

      Volume: 50 Pages: 2445-2447

    • DOI

      10.1039/c3cc48818g

    • NAID

      120005525210

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structurally novel highly potent proteasome inhibitors created by the dtructure-nased hybridization of non-peptidic belactosin derivatives and peptide boronates.2014

    • Author(s)
      S. Kawamura, Y. Unno, A. Asai, M. Arisawa, S. Shuto
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 57 Pages: 2726-2735

    • DOI

      10.1021/jm500045x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ligandーfree Suzuki-Miyaura Coupling with Sulfur-modified Gold-supported Palladium in the Synthesis of a Conformationally-Restricted Cyclopropane Compound Library with Three-Dimensional Diversity2014

    • Author(s)
      Mitsuhiro ARISAWA
    • Journal Title

      ACS Comb. Sci

      Volume: 16 Pages: 215-220

    • DOI

      10.1021/co4001138

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Conformationally Restricted GABA with Bicyclo[3.1.0]hexane Backbone as the First Highly Selective BGT-1 Inhibitor2014

    • Author(s)
      Takaaki Kobayashi, Akihiro Suemasa, Arisa Igawa, Soichiro Ide, Hayato Fukuda, Hiroshi Abe, Mitsuhiro Arisawa, Masabumi Minami, Satoshi Shuto
    • Journal Title

      ACS Med. Chem. Lett

      Volume: 5 Pages: 889-893

    • DOI

      10.1021/ml500134k

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Development of a New Class of Proteasome Inhibitors with an Epoxyketone Warhead: Rational Hybridization of Non-peptidic Belactosin Derivatives and Peptide Epoxyketones2014

    • Author(s)
      Shuhei Kawamura, Yuka Unno, Akira Asai, Mitsuhiro Arisawa, Satoshi Shuto
    • Journal Title

      Bioorg. Med. Chem

      Volume: 22 Pages: 3091-3095

    • DOI

      10.1016/j.bmc.2014.04.032

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Synthesis of 3',4'-difluoro-3'-deoxyribonucleosides and its evaluation of the biological activities: Discovery of a novel type of anti-HCV agent 3',4'-difluorocordycepin2014

    • Author(s)
      Shimada H, Haraguchi K, Hotta K, Miyaike T, Kitagawa Y, Tanaka H, Kaneda R, Abe H, Shuto S, Mori K, Ueda Y, Kato N, Snoeck R, Andrei G, Balzarini J.
    • Journal Title

      Bioorg Med Chem

      Volume: 22 Pages: 6174-6182

    • DOI

      10.1016/j.bmc.2014.08.024

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Investigation of the Non-Covalent Binding Mode of Covalent Proteasome Inhibitors around the Transition State by Combined Use of Cyclopropylic Strain-Based Conformational Restriction and Computational Modeling2014

    • Author(s)
      Shuhei KAWAMURA
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 56 Pages: 2726-2735

    • DOI

      10.1021/jm400542h

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Three-Dimensional Structural Diversity-Oriented Peptidomimetics Based on the Cyclopropylic Strain2013

    • Author(s)
      Akira Mizuno
    • Journal Title

      Organic Letters

      Volume: 15 Pages: 1686-1689

    • DOI

      10.1021/ol400469w

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational Restriction Approach to BACE1 InhibitorsII:SAR Study of the Isocytosine Derivatives Fixed with a cis-Cyclopropane Ring.2013

    • Author(s)
      Shuji YONEZAWA
    • Journal Title

      Bioorg. Med. Chem. Lett

      Volume: 23 Pages: 2912-2915

    • DOI

      10.1016/j.bmcl.2013.03.056

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potent Proteasome Inhibitors Derived from the Unnatural Cis-Cyclopropane Isomer of Belactosin A: Synthesis, Biological Activity, and Mode of Action.2013

    • Author(s)
      Shuhei KAWAMURA
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 56 Pages: 3689-3700

    • DOI

      10.1021/jm4002296

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyclopropane-Based conformational restriction of GABA by a stereochemical diversity-oriented strategy: Identification of an efficient lead for potent inhibitors of GABA transports2013

    • Author(s)
      K. Nakada, M. Yoshikawa, S. Ide, A. Suemasa, S. Kawamura, T. Kobayashi, E. Masuda, Y. Ito, W. Hayakawa, T. Katayama, S. Yamada, M. Arisawa, M. Minami, S. Shuto
    • Journal Title

      Bioorg. Med. Chem

      Volume: 21 Pages: 4938-4950

    • DOI

      10.1016/j.bmc.2013.06.063

    • NAID

      120005358936

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of the stabilized analogs of belactosin A with the unnatural cis-cyclopropane structure2013

    • Author(s)
      Shuhei KAWAMURA
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 11 Pages: 6615-6622

    • DOI

      10.1039/c3ob41338a

    • NAID

      120005462409

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational restriction approach to β-secretase (BACE1) inhibitors III: Effective investigation of the binding mode by combinational use of X-ray analysis, isothermal titration calorimetry and theoretical calculations2013

    • Author(s)
      S. Yonezawa, K Fujiwara, T. Yamamoto, K. Hattori, H. Yamakawa, C. Muto, M. Hosono, Y. Tanaka, T. Nakano, H. Takemoto, M. Arisawa, S. Shuto
    • Journal Title

      Bioorg. Med. Chem

      Volume: 21 Pages: 6506-6522

    • DOI

      10.1016/j.bmc.2013.08.036

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Palladium-Catalyzed Arylation of Cyclopropanes via Directing Group-Mediated C(sp3)-H Bond Activation to Construct Quaternary Carbon. Centers : Synthesis of cis- and trans-1,1,2-Trisubstituted Chira1 Cyclopropanes2013

    • Author(s)
      N. Hoshiya, M. Arisawa, S. Shuto
    • Journal Title

      Org. Lett

      Volume: 15 Pages: 6202-6205

    • DOI

      10.1021/ol4030452

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation of nonracemic bromomethylenecyclopropane and its use in Suzuki-Miyaura coupling; synthesis of the arylmethyl-cis-cyclopropane structure core.2013

    • Author(s)
      Makoto TANABE
    • Journal Title

      The Journal of Organic Chemistry

      Volume: 78 Pages: 11714-11720

    • DOI

      10.1021/jo401675z

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure Formation and Catalytic Activity of DNA in Organic Solvents2013

    • Author(s)
      Hiroshi Abe, Naoko Abe, Aya Shibata, Keiji Ito, Yoshiyuki Tanaka, Mika Ito, Hisao Saneyoshi, Satoshi Shuto, and Yoshihiro Ito
    • Journal Title

      Chem. Int. Ed

      Volume: 51 Pages: 6475-6479

    • DOI

      10.1002/anie.201201111

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyclopropane-Based Stereochemical Diversity-Oriented Conformational Restriction Strategy : Histamine Analogs with the 4-Amino-2, 3-methano-1-(1H-imidazol-4-yl)butane Structure as Highly Potent Histamine H3 and/or H4 Receptor Ligands.2012

    • Author(s)
      M. Watanabe, T. Kobayashi, T. Hirokawa, A. Yoshida, Y. Ito, S. Yamada, N. Orimoto, Y. Yamasaki, M. Arisawa, S. Shuto
    • Journal Title

      Org. Biomol. Chem.

      Volume: 10 Pages: 736-74

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and discovery of N-carbonylpyrrolidine- or N-sulfonylpyrrolidine-containing uracil derivatives as potent human deoxyuridine triphosphatase inhibitors.2012

    • Author(s)
      H. Miyakoshi, S. Miyahara, T. Yokogawa, K. T. Chong, J. Taguchi, K. Endoh, W. Yano, T. Wakasa, H. Ueno, Y. Takao, M. Nomura, S. Shuto, H. Nagasawa, M. Fukuoka
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 2960-2969

    • DOI

      10.1021/jm201627n

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of a novel class of potent human deoxyuridine triphosphatase inhibitors remarkably enhancing the antitumor activity of thymidylate synthase inhibitors.2012

    • Author(s)
      S. Miyahara, H. Miyakoshi, T. Yokogawa, K. T. Chong, W. Yano, T. Wakasa, H. Ueno, Y. Takao, A. Fujioka, A. Hashimoto, K. Itou, K. Yamamura, M. Nomura, H. Nagasawa, S. Shuto, M. Fukuoka
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 2970-2980

    • DOI

      10.1021/jm201628y

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ruthenium-catalyzed cycloisomerization of 1,3-dienes, for example, an N-dienyl-2-vinylaniline derivative, leading to a 3-Exomethylene-2-vinylindole derivative and its application to the synthesis of (±)-cinchonaminone2012

    • Author(s)
      Takao Ogawa
    • Journal Title

      Eur. J. Org. Chem

      Volume: - Pages: 3084-3087

    • DOI

      10.1002/ejoc.201200260

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of Highly Potent Human Deoxyuridine Triphosphatase Inhibitors Based on the Conformation Restriction Strategy.2012

    • Author(s)
      S. Miyahara, H. Miyakoshi, T. Yokogawa, T. Muto, K. Endoh, W. Yano, T. Wakasa, H. Ueno, K. Itou, M. Nomura, H. Nagasawa, S. Shuto
    • Journal Title

      J. Med. Chem.

      Volume: 55, Pages: 5483-5496

    • DOI

      10.1021/jm300416h

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1,2,3-Triazole-Containing Uracil Derivatives with Excellent Pharmacokinetics as a Novel Class of Potent Human Deoxyuridine Triphosphatase Inhibitors.2012

    • Author(s)
      H. Miyakoshi, S. Miyahara, K. Endoh, J. Taguchi, M. Nomura, Y. Takao, A. Fujioka, A. Hashimoto, K Itou, K. Yamamura, S. Shuto, H. Nagasawa, M. Fukuoka
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 6427-6437

    • DOI

      10.1021/jm3004174

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ligand-Free Buchwald-Hartwig Aromatic Aminations of Aryl Halides Catalyzed by Low-Leaching and Highly Recyclable Sulfur-Modified Gold-Supported Palladium Material2012

    • Author(s)
      Mohammad Al-Amin, Tetsuo Honma, Naoyuki Hoshiya, Takatoshi Sato, Satoshi Shuto, Mitsuhiro Arisawa
    • Journal Title

      Adv. Synth. Cat.

      Volume: 354 Pages: 1061-1068

    • DOI

      10.1002/adsc.201100761

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and Synthesis of Indomethacin Analogues That Inhibit P-Glycoprotein and/or Multidrug Resistant Protein without Cox Inhibitory Activity2012

    • Author(s)
      Mitsuhiro Arisawa, Yayoi Kasaya, Tohru Obata, Takuma Sasaki, Tomonori Nakamura, Takuya Araki, Koujirou Yamamoto, Akito Sasaki, Akihito Yamano, Mika Ito, Hiroshi Abe, Yoshihiro Ito, and Satoshi Shuto
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 8152-8163

    • DOI

      10.1021/jm301084z

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational Restriction Approach to y -Secretase (BACE1)Inhibitors : Effect of a Cyclopropane Ring To Induce an Alternative Binding Mode.2012

    • Author(s)
      S. Yonezawa, T. Yamamoto, H. Yamakawa, C. Muto, M. Hosono, K. Hattori, K. Higashino, T. Yutsudo, H. Iwamoto, Y. Kondo, M. Sakagami, H. Togame, Y. Tanaka, T. Nakano, H. Takemoto, M. Arisawa, S. Shuto,
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 8838-8858

    • DOI

      10.2174/156802606776743084

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Development of Potent Ligands by the Three-Dimensional Diversity-Oriented Strategy Based on the Characteristic Stereo-and Stereoelectronic Feature of Cyclopopane.2015

    • Author(s)
      Satoshi Shuto
    • Organizer
      Frontier in Medicinal Chemistry
    • Place of Presentation
      Marburg (Germany)
    • Year and Date
      2015-03-15 – 2015-03-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] GABA配座制限に基づく初のGABAトランスポーターBGT-1サブタイプ高選択的阻害剤の創製2014

    • Author(s)
      末政亮大、小林嵩明、井川ありさ、福田隼、阿部洋、井手聡一郎、南雅文、周東智
    • Organizer
      第32回メディシナルケミストリーシンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] PdおよびNi触媒によるシクロプロパン第三級炭素上への芳香環導入反応―効率的化学空間探索型創薬ライブラリーの構築を目指して―2014

    • Author(s)
      星谷尚亨、四辻慶佑、小林嵩明、福田 隼、阿部 洋、有澤光弘、周東 智
    • Organizer
      第40回反応と合成の進歩シンポジウム
    • Place of Presentation
      仙台
    • Year and Date
      2014-11-10 – 2014-11-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] ddntification of the first highly selective BGT-I inhibitor based on conformational restriction of GABA.2014

    • Author(s)
      末政亮大、中田和彰、小林嵩明、井川ありさ、福田隼、阿部洋、有澤光弘、井手聡一郎、南雅文、周東智
    • Organizer
      The 12th International Symposium for Future Drug Discovery and Medical Care
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-04 – 2014-09-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] ペプチド性天然物ベラクトシンAをプロトタイプとする高活性非ペプチド性プロテアソーム阻害剤の創製:“Scaffold Hopping”に基づく論理的分子設計と合成2013

    • Author(s)
      川村周平(学生最優秀発表賞受賞)、海野雄加、浅井章良、有澤光弘、周東智
    • Organizer
      第39回反応と合成の進歩シンポジウム
    • Place of Presentation
      福岡
    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] リン脂質コンジュゲート2015

    • Inventor(s)
      周東 智、川村周平、山田静雄、伊藤由彦
    • Industrial Property Rights Holder
      周東 智、川村周平、山田静雄、伊藤由彦
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-044079
    • Filing Date
      2015-03-05
    • Related Report
      2014 Annual Research Report
  • [Patent(Industrial Property Rights)] 新規オキシトシン誘導体およびそれを含む医薬組成物2014

    • Inventor(s)
      周東 智、水野 彰、東田陽博
    • Industrial Property Rights Holder
      周東 智、水野 彰、東田陽博
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-139048
    • Filing Date
      2014-07-04
    • Related Report
      2014 Annual Research Report

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Published: 2012-04-23   Modified: 2019-07-29  

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