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Development of artificial peptidase domains

Research Project

Project/Area Number 24655146
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionThe University of Tokyo

Principal Investigator

GOTO Yuki  東京大学, 理学(系)研究科(研究院), 助教 (70570604)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsペプチド / 人工酵素 / 試験管内分子進化
Research Abstract

Although artificial proteases with novel substrate specificities and unique catalytic properties would have potential utility in useful analytical methods and new therapeutic approaches, de novo creation of artificial protease domain has never achieved. This program aims at development of artificial small peptidase domains, which catalyzes self-cleavage of an amide bond.
By using the translation initiation reprogramming method, a short (20-40 aa length) random peptide library with a 1013 diversity was prepared. In vitro selection experiments of active species from the resulting peptide library has provided 22 novel peptide sequences that could exhibit the desired self-cleavage activity.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (24 results)

All 2014 2013 2012

All Journal Article (7 results) (of which Peer Reviewed: 6 results) Presentation (13 results) (of which Invited: 5 results) Book (4 results)

  • [Journal Article] Selection-based discovery of druglike macrocyclic peptides2014

    • Author(s)
      Passioura, T.; Katoh, T.; Goto, Y.; Suga, H.
    • Journal Title

      Annu. Rev. Biochem.

      Volume: (in press) Issue: 1 Pages: 727-752

    • DOI

      10.1146/annurev-biochem-060713-035456

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Selection-Based Discovery of Druglike Macrocyclic Peptides.2014

    • Author(s)
      Passioura T, Katoh T, Goto Y, Suga H.
    • Journal Title

      Annu Rev Biochem.

      Volume: in press

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Non-standard peptide expression under the genetic code consisting of reprogrammed dual sense codons2013

    • Author(s)
      Y. Goto, M. Iseki, A. Hitomi, H. Murakami, and H. Suga
    • Journal Title

      ACS Chemical Biology

      Volume: 8 Issue: 12 Pages: 266-719

    • DOI

      10.1021/cb400549p

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reevaluation of the D-amino acid compatibility with the elongation event in translation2013

    • Author(s)
      T. Fujino, Y. Goto, H. Suga, H. Murakami
    • Journal Title

      Journal of American Chemical Society

      Volume: 135 Issue: 5 Pages: 1830-1837

    • DOI

      10.1021/ja309570x

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Flexizymes as a tRNA acylation tool facilitating genetic code reprogramming2012

    • Author(s)
      Y.Goto, et al.
    • Journal Title

      Methods in Molecular Biology

      Volume: 848 Pages: 465-478

    • DOI

      10.1007/978-1-61779-545-9_29

    • ISBN
      9781617795442, 9781617795459
    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Selective thioether macrocyclization of peptides having the N-terminal 2-chloroacetyl group and competing two or three cysteine residues in translation2012

    • Author(s)
      Kazuhiro Iwasaki, Yuki Goto, Takayuki Katoh, Hiroaki Suga
    • Journal Title

      Org.Biomol.Chem.

      Volume: 10 Issue: 30 Pages: 5783-5786

    • DOI

      10.1039/c2ob25306b

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Lantibiotics from Geobacillus thermodenitrificans2012

    • Author(s)
      Garg N, Tang W, Goto Y, Nair SK, van der Donk WA.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 109 Issue: 14 Pages: 5241-5246

    • DOI

      10.1073/pnas.1116815109

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 改変翻訳反応を用いた特殊環状ペプチドの合成2014

    • Author(s)
      後藤佑樹、山岸祐介、加藤敬行、菅裕明
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋(特別講演)
    • Related Report
      2013 Final Research Report
  • [Presentation] 人工環状ペプチドは核内増殖抗原PCNAを細胞内で阻害する2014

    • Author(s)
      村上直央、後藤佑樹、加藤敬行、Kun Yang、William Bozza、Zhihao Zhuang、菅裕明
    • Organizer
      第16回生命化学研究会
    • Place of Presentation
      熱海
    • Related Report
      2013 Final Research Report
  • [Presentation] 人工環状ペプチドは核内増殖抗原PCNAを細胞内で阻害する2014

    • Author(s)
      村上直央、後藤佑樹、加藤敬行、Kun Yang、William Bozza、Zhihao Zhuang、菅裕明
    • Organizer
      第16回生命化学研究会
    • Place of Presentation
      静岡県熱海市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 改変翻訳反応を用いた特殊環状ペプチドの合成2014

    • Author(s)
      後藤佑樹・山岸祐介・加藤敬行・菅裕明
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 人工生合成系による特殊ペプチドの合成2013

    • Author(s)
      後藤佑樹
    • Organizer
      第45回若手ペプチド夏の勉強会
    • Place of Presentation
      八王子
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 人工生合成系による特殊ペプチドの合成2013

    • Author(s)
      後藤 佑樹
    • Organizer
      第45回若手ペプチド夏の勉強会
    • Place of Presentation
      東京都八王子市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 翻訳合成系を用いた新規生理活性ペプチドの探索2012

    • Author(s)
      後藤佑樹、菅裕明
    • Organizer
      BIA Symposium2012
    • Place of Presentation
      東京
    • Year and Date
      2012-07-20
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] N-アルキルアミノ酸含有大環状擬天然ペプチドライブラリーからのHECT型E3ユビキチン転移酵素Smurf2阻害剤の探索2012

    • Author(s)
      山口淳、山岸祐介、後藤佑樹、加藤敬行、菅裕明
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 酸化的カップリング反応により環状化したペプチドのin vitroセレクション2012

    • Author(s)
      村上直央、後藤佑樹、山岸祐介、加藤敬行、William Bozza、Kun Yang、Zhihao Zhuang、菅裕明
    • Organizer
      第49回ペプチド討論会
    • Place of Presentation
      鹿児島
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] In vitro selection of macrocyclic peptides against human aminoacyl-tRNA synthetase complex interacting protein-12012

    • Author(s)
      Xiao Song、Kibom Kim、Sunghoon Kim、加藤敬行、後藤佑樹、菅裕明
    • Organizer
      第49回ペプチド討論会
    • Place of Presentation
      鹿児島
    • Related Report
      2013 Final Research Report
  • [Presentation] 翻訳合成系を用いた新規生理活性ペプチドの探索2012

    • Author(s)
      後藤佑樹、菅裕明
    • Organizer
      BIA Symposium 2012
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] In vitro selection of macrocyclic Peptides against Human aminoacyl-tRNA synthetase complex-interacting protein -1 (AIMP-1)2012

    • Author(s)
      Xiao Song, Kibom Kim, Sunghoon Kim, Takayuki Katoh, Yuki Goto, Hiroaki Suga
    • Organizer
      第49回ペプチド討論会
    • Place of Presentation
      鹿児島
    • Related Report
      2012 Research-status Report
  • [Presentation] N -アルキルアミノ酸含有大環状擬天然ペプチドライブラリーからのHECT型E3ユビキチン転移酵素 Smurf2阻害剤の探索2012

    • Author(s)
      山口 淳, 山岸 祐介, 後藤 佑樹, 加藤 敬行, 菅 裕明
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Book] 最新ペプチド合成技術とその創薬研究への応用(第3章4節)2012

    • Author(s)
      伊藤悠美、後藤佑樹、菅裕明
    • Publisher
      メディカルドゥ
    • Related Report
      2013 Final Research Report
  • [Book] 生命システム工学(第5章)2012

    • Author(s)
      加藤敬行、後藤佑樹、菅裕明
    • Publisher
      化学同人
    • Related Report
      2013 Final Research Report
  • [Book] 最新ペプチド合成技術とその創薬研究への応用(内 第3章4節を担当)2012

    • Author(s)
      伊藤悠美、後藤佑樹、菅裕明
    • Total Pages
      309
    • Publisher
      メディカルドゥ
    • Related Report
      2012 Research-status Report
  • [Book] 生命システム工学(内 5章を担当)2012

    • Author(s)
      加藤敬行、後藤佑樹、菅裕明
    • Total Pages
      213
    • Publisher
      化学同人
    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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