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Method for crystal quality improvement of protein crystal

Research Project

Project/Area Number 24657079
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionHigh Energy Accelerator Research Organization

Principal Investigator

SENDA Toshiya  大学共同利用機関法人高エネルギー加速器研究機構, 物質構造科学研究所, 教授 (30272868)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords結晶工学 / クライオプロテクタント / タンパク質 / 結晶化 / 分解能 / X線結晶構造解析 / 回折データ測定 / データベース
Research Abstract

The multi-step soaking method is a novel approach to the post-crystallization treatment used to improve quality of protein crystals. This new method improved the crystal quality of CagA, a type IV secretion effector derived from Helicobacter pylori, from 10 angstrom to 3.1 angstrom resolution. In addition, this method were applied to the other protein, and improved its crystal quality from 3.5 angstrom resolution to 2.1 angstrom resolution.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (18 results)

All 2014 2013 2012

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (14 results) (of which Invited: 4 results) Book (1 results)

  • [Journal Article] Structural basis of the γ-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase.2013

    • Author(s)
      Aizawa, S., Senda, M., Harada, A., Maruyama, N., Ishida, T., Aigaki, T., Ishigami, A., Senda, T.
    • Journal Title

      PLoS One

      Volume: 8 Issue: 1 Pages: e53706-e53706

    • DOI

      10.1371/journal.pone.0053706

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA2012

    • Author(s)
      Hayashi T., Senda M., Morohashi H., Higashi H., Horio M., Kashiba Y., Nagase L., Sasaya D., Shimizu T., Venugopalan N., Kumeta H., Noda N.N., Inagaki F., Senda T., Hatakeyama M.
    • Journal Title

      Cell Host Microbe

      Volume: 12 Issue: 1 Pages: 20-33

    • DOI

      10.1016/j.chom.2012.05.010

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary crystallographic analysis of D-aspartate oxidase from porcine kidney2012

    • Author(s)
      Senda M., Yamamoto A., Tanaka H., Ishida T., Horiike K., Senda T.
    • Journal Title

      Acta Crystallogr. Sec. F Sytuct. Biol. Cryst. Commun.

      Volume: 68 Issue: 6 Pages: 644-646

    • DOI

      10.1107/s1744309112013243

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Crystal quality improvement with cryoprotectants2013

    • Author(s)
      Toshiya Senda
    • Organizer
      International Conference on Structural Genomics 2013 -Structural Life Science
    • Place of Presentation
      京王プラザホテル札幌(札幌)
    • Year and Date
      2013-07-30
    • Related Report
      2013 Final Research Report
  • [Presentation] A novel approach of crystal-quality improvement by"the multi-step soaking method"2013

    • Author(s)
      Miki Senda
    • Organizer
      American Crystallographic Association Annual Meeting 2013
    • Place of Presentation
      シェラトンワイキキホテル(ハワイ)
    • Year and Date
      2013-07-24
    • Related Report
      2013 Final Research Report
  • [Presentation] 「multi-step soaking method」によるピロリ菌の発がんタンパク質CagA結晶の改善2013

    • Author(s)
      千田美紀
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取)
    • Year and Date
      2013-06-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Crystal quality improvement with cryoprotectants2013

    • Author(s)
      Toshiya Senda
    • Organizer
      International Conference on Structural Genomics 2013-Structural Life Science
    • Place of Presentation
      京王プラザホテル札幌(札幌)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] A novel approach of crystal-quality improvement by “the multi-step soaking method2013

    • Author(s)
      Miki Senda, Takeru Hayashi, Masanori Hatakeyama, Toshiya Senda
    • Organizer
      American Crystallographic Association Annual Meeting 2013
    • Place of Presentation
      シェラトンワイキキホテル(ハワイ)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 「multi-step soaking method」によるピロリ菌の発がんタンパク質CagA結晶の改善2013

    • Author(s)
      千田美紀、林剛瑠、竹内恒、畠山昌則、千田俊哉
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 無酸素条件下での結晶化2013

    • Author(s)
      千田美紀、千田俊哉
    • Organizer
      日本結晶学会年会(招待講演)
    • Place of Presentation
      熊本大学(熊本市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] クライオプロテクタントを用いた結晶工学的処理によるHelicobacter pylori由来CagA結晶の改善2012

    • Author(s)
      千田美紀
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大学(大阪)
    • Year and Date
      2012-09-21
    • Related Report
      2013 Final Research Report
  • [Presentation] Improve the efficiency and reproducibility of protein crystallization2012

    • Author(s)
      Miki Senda
    • Organizer
      American Crystallographic Association Annual Meeting 2012
    • Place of Presentation
      The Westin Boston Waterfront hotel(ボストン)
    • Year and Date
      2012-07-31
    • Related Report
      2013 Final Research Report
  • [Presentation] 「すぐ見る法」による蛋白質の結晶化〜スクリーニングの効率化と再現性の向上に向けて2012

    • Author(s)
      千田美紀
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋大学(名古屋)
    • Year and Date
      2012-06-20
    • Related Report
      2013 Final Research Report
  • [Presentation] 「すぐ見る法」による蛋白質の結晶化 ~スクリーニングの効率化と再現性の向上に向けて2012

    • Author(s)
      千田美紀
    • Organizer
      蛋白質科学会
    • Place of Presentation
      名古屋
    • Related Report
      2012 Research-status Report
  • [Presentation] Improve the efficiency and reproducibility of protein crystallization2012

    • Author(s)
      Miki Senda
    • Organizer
      American Crystallographic Association
    • Place of Presentation
      Boston, MA, USA
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] クライオプロテクタントを用いた「結晶工学的処理」によるHelicobacter pylori由来CagA結晶の改善2012

    • Author(s)
      千田美紀
    • Organizer
      蛋白研セミナー”高難度結晶の分解能向上に秘策はあるか?”
    • Place of Presentation
      大阪
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] タンパク質の結晶化におけるシーディングの効果,2012

    • Author(s)
      佐藤優花里
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Book] 実験医学増刊構造生命科学で何がわかるのか、何ができるのか2014

    • Author(s)
      千田俊哉, 他
    • Total Pages
      193
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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