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Structural biology of oxygen-evolving photosystem II

Research Project

Project/Area Number 24687006
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Plant molecular biology/Plant physiology
Research InstitutionOsaka City University

Principal Investigator

Kawakami Keisuke  大阪市立大学, 複合先端研究機構, 特任准教授 (40619904)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2013: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2012: ¥9,750,000 (Direct Cost: ¥7,500,000、Indirect Cost: ¥2,250,000)
Keywords光化学系II / 酸素発生反応 / 酸素発生中心 / ヨウ素イオン / 還元反応 / 色素・光合成 / 色素体機能・光合成
Outline of Final Research Achievements

Plants and cyanobacteria form oxygen molecules required for life on the earth. Tis reaction is performed by light-induced electron transfer and water-splitting reaction of oxygen-evolving center, the so-called Mn4CaO5-cluster in photosystem II (PSII). The chloride ion (Cl-) in PSII is known to be an essential co-factor in the water-splitting reaction, however, the reaction is inhibited when Cl- is replaced with iodine ion (I-). We analyzed the crystal structure of iodine-substituted PSII (I-PSII) to elucidate the inhibition mechanism of the water-splitting reaction by I- and the associated structural changes of the Mn4CaO5-cluster. In this study, we conformed the dynamic structural changes in the Mn4CaO5-cluster and reduction reaction of the cluster upon I- substitution.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (37 results)

All 2015 2014 2013 2012 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results,  Open Access: 1 results) Presentation (19 results) (of which Invited: 5 results) Book (2 results) Remarks (5 results)

  • [Journal Article] Identification of β-Cryptoxanthin in Oxygen-Evolving Photosystem II from Thermosynechococcus vulcanus2014

    • Author(s)
      Keisuke Kawakami, Ritsuko Fujii, Yasufumi Umena, Shin-ichiro Ozawa, Yuichiro Takahashi, Hideki Hashimoto, Jian-Ren Shen, and Nobuo Kamiya
    • Journal Title

      Carotenoid Science

      Volume: 19 Pages: 48-51

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generalized approximate spin projection calculations of effective exchange integrals of the CaMn405 cluster in the S1 and S3 states of oxygen evolving complex of photosystem II2014

    • Author(s)
      H. Isobe, M. Shoji, S. Yamanaka, H. Mino, Y. Umena, K. Kawakami, N. Kamiya, J.-R. Shen, and K. Yamaguchi
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 16 Issue: 24 Pages: 11911-11923

    • DOI

      10.1039/c4cp00282b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Nature of chemical bonds of the CaMn4O5cluster in oxygen evolving complex of photosystem II. Jahn-Teller distortion and its suppression by Ca doping in cubane structures2013

    • Author(s)
      K. Yamaguchi, S. Yamanaka, H. Isobe, T. Saito, K. Kanda, Y. Umena, K. Kawakami, J. -R. Shen, N. Kamiya, M. Okumura, H. Nakamura, M. Shoji and Y. Yoshioka
    • Journal Title

      Internat. J. Quantum Chem

      Volume: 113 Issue: 4 Pages: 453-473

    • DOI

      10.1002/qua.24280

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Full Geometry Optimizations of the Mixed-Valence CaMn4O4X(H2O) 4 (X=OH or O) Cluster in OEC of PS II: Degree of Symmetry Breaking of the Labile Mn-X-Mn Bond Revealed by Several Hybrid DFT Calculations2013

    • Author(s)
      K. Yamaguchi, H. Isobe, S. Yamanaka, T. Saito, K. Kanda, M. Shoji, Y. Umena, K. Kawakami, J.-R.. Shen, N. Kamiya, M. Okumura
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 113 Issue: 4 Pages: 525-541

    • DOI

      10.1002/qua.24117

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of Sr-substituted photosystem II at 2.1 Å resolution and its implications in the mechanism of water oxidation2013

    • Author(s)
      Faisal Hammad Mekky Koua, Yasufumi Umena, Keisuke Kawakami, Jian-Ren Shen
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 110 Issue: 10 Pages: 3889-3894

    • DOI

      10.1073/pnas.1219922110

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photosystem II does not possess a simple excitation energy funnel: Time-resolved fluorescence spectroscopy meets theory2013

    • Author(s)
      Yutaka Shibata, Shunsuke Nishi, Keisuke Kawakami, Jian-Ren Shen, Thomas Renger
    • Journal Title

      J. Am. Chem. Soc.

      Volume: - Issue: 18 Pages: 6903-6914

    • DOI

      10.1021/ja312586p

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Applications of Peptide Gemini Surfactants as Solubilization Surfactants for Photosystems I and II of Cyanobacteria2013

    • Author(s)
      Shuhei Koeda, Katsunari Umezaki, Tomoyasu Noji, Atsushi Ikeda, Keisuke Kawakami, Masaharu Kondo, Yasushi Yamamoto, Jian-Ren Shen, Keijiro Taga, Takehisa Dewa, Mamoru Nango, Toshiki Tanaka, Toshihisa Mizuno
    • Journal Title

      Langmuir

      Volume: 29 Issue: 37 Pages: 11667-11680

    • DOI

      10.1021/la402167v

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evidence for an Unprecedented Histidine Hydroxyl Modification on D2-His336 in Photosystem II of Thermosynechoccocus vulcanus and Thermosynechoccocus elongatus2013

    • Author(s)
      Miwa Sugiura, Kazumi Koyama, Yasufumi Umena, Keisuke Kawakami, Jian-Ren Shen, Nobuo Kamiya, Alain Boussac
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 52 Pages: 9426-9431

    • DOI

      10.1021/bi401213m

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical insight in to hydrogen-bonding networks and proton wire for the CaMn405 cluster of photosystem II. Elongation of Mn-Mn distances with hydrogen bonds2013

    • Author(s)
      M. Shoji, H. Isobe, S. Yamanaka, Y. Umena, K. Kawakami, N. Kamiya, J. -R. Shen and K. Yamaguchi
    • Journal Title

      Catal. Sci. & Technol.

      Volume: 3 Issue: 7 Pages: 1831-1848

    • DOI

      10.1039/c3cy00051f

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and reactivity of the mixed-alence CaMn_4O_5(H_2O)_4 and CaMn_4O_4(OH)(H_2O)_4 clusters at oxygen evolution complex of photosystem II.Hybrid DFT (UB3LYP and UBHANDHLYP) calculations2012

    • Author(s)
      T.Saito, S.Yamanaka, K.Kanda, H.Isobe, Y.Takano, Y.Shigeta, Y.Umena, K.Kawakami, J.-R.Shen, N.Kamiya, M.Okumura, M.Shoji, Y.Yoshioka, K.Yamaguchi
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 112 Issue: 1 Pages: 321-343

    • DOI

      10.1002/qua.23261

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical illumination of water-inserted structures of the CaMn4O5 cluster in the S2 and S3 states of oxygen-evolving complex of photosystem II: full geometry optimizations by B3LYP hybrid density functional2012

    • Author(s)
      H. Isobe, M. Shoji, S. Yamanaka, Y. Umena, K. Kawakami, N. Kamiya, J.-R. Shen, K. Yamaguchi
    • Journal Title

      Dalton Transactions

      Volume: 41 Issue: 44 Pages: 13727-13740

    • DOI

      10.1039/c2dt31420g

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] ヨウ素イオンによるシアノバクテリア由来光化学系IIの酸素発生阻害機構2015

    • Author(s)
      川上恵典, 萩原大介, 梅名泰史, 福島佳優, 伊藤亮孝, 手木芳男, 沈建仁, 神谷信夫
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪府
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] 光合成の基盤であるPSIIの結晶構造解析と展望2015

    • Author(s)
      川上恵典
    • Organizer
      日本植物学会年会
    • Place of Presentation
      新潟県
    • Year and Date
      2015-09-06
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ヨウ素イオンによる植物・藻類の酸素発生阻害機構の解明2015

    • Author(s)
      川上恵典, 萩原大介, 梅名泰史, 福島佳優, 伊藤亮孝, 手木芳男, 沈建仁, 神谷信夫
    • Organizer
      反応中心セミナー
    • Place of Presentation
      京都府
    • Year and Date
      2015-07-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] Inhibition mechanism of the water-splitting reaction of photosystem II by iodine ions2015

    • Author(s)
      Keisuke Kawakami, Daisuke Hagiwara, Yasufumi Umena, Yoshimasa Fukushima, Akitaka Ito, Yoshio Teki, Jian-Ren Shen, and Nobuo Kamiya
    • Organizer
      第56回植物生理学会年会
    • Place of Presentation
      東京農業大学(東京都世田谷区桜丘1-1-1)
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Inhibition mechanism of the water-splitting reaction of photosystem II by iodine ions2014

    • Author(s)
      Keisuke Kawakami, Daisuke Hagiwara, Yasufumi Umena, Yoshimasa Fukushima, Akitaka Ito, Yoshio Teki, Jian-Ren Shen, and Nobuo Kamiya
    • Organizer
      第8回ナノメディシン国際シンポジウム
    • Place of Presentation
      愛媛大学(愛媛県松山市道後樋又10番13号)
    • Year and Date
      2014-12-04 – 2014-12-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] Inhibition mechanism of the water-splitting reaction of photosystem II by iodine ions2014

    • Author(s)
      Keisuke Kawakami, Daisuke Hagiwara, Yasufumi Umena, Yoshimasa Fukushima, Akitaka Ito, Yoshio Teki, Jian-Ren Shen, and Nobuo Kamiya
    • Organizer
      ICARP2014
    • Place of Presentation
      Awaji Yumebutai International Conference Center(兵庫県淡路市夢舞台1番地)
    • Year and Date
      2014-11-24 – 2014-11-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヨウ素イオンによる光化学系II複合体の酸素発生阻害機構2014

    • Author(s)
      川上恵典・萩原大介・梅名泰史・福島佳優・伊藤亮孝・手木芳男・沈建仁・神谷信夫
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都市左京区岩倉大鷺町422)
    • Year and Date
      2014-10-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ヨウ素イオンによる光化学系 II 複合体の酸素発生阻害機構2014

    • Author(s)
      川上恵典・萩原大介・梅名泰史・福島佳優・伊藤亮孝・手木芳男・沈建仁・ 神谷信夫
    • Organizer
      第5回日本光合成学会年会
    • Place of Presentation
      近畿大学(大阪府東大阪市小若江3-4-1)
    • Year and Date
      2014-05-30 – 2014-05-31
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物の酸素発生型光化学系II研究の過去・現在、そして未来2014

    • Author(s)
      川上恵典
    • Organizer
      ナノバイオテクノロジー研究会
    • Place of Presentation
      名古屋工業大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Towards structural elucidation of PSII-LHCII supercomplex from Chlamydomonas reinhardtii2014

    • Author(s)
      Keisuke Kawakami
    • Organizer
      The 2013 OCARINA Annual International Meeting
    • Place of Presentation
      大阪市立大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヨウ素イオンによる光化学系 II 複合体の酸素発生阻害機構2013

    • Author(s)
      川上恵典
    • Organizer
      蛋白質研究所セミナー
    • Place of Presentation
      大阪大学蛋白質研究所
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 酸素発生光化学系II 複合体におけるβ-クリプトキサンチンの同定2013

    • Author(s)
      川上恵典、藤井律子、梅名泰史、小澤真一郎、高橋裕一郎、橋本秀樹、神谷信夫、沈建仁
    • Organizer
      日本光合成学会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] How iodine ions inhibit the oxygen evolution of photosystem II?2013

    • Author(s)
      Keisuke Kawakami, Daisuke Hagiwara, Yasufumi Umena, Jian-Ren Shen, and Nobuo Kamiya
    • Organizer
      The 16th International Congress on Photosynthesis
    • Place of Presentation
      セントルイス(アメリカ)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 光合成膜タンパク質光化学系 ll の結晶構造とその後の展開2013

    • Author(s)
      川上恵典
    • Organizer
      有期太陽電池シンポジウム
    • Place of Presentation
      京都大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 中性子結晶構造解析による植物の酸素発生機構の理解とその取り組みについて2013

    • Author(s)
      川上恵典、神谷信夫
    • Organizer
      蛋白質研究所セミナー
    • Place of Presentation
      大阪大学蛋白質研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] How iodide ions inhibit the oxygen evolution of photosystem II?2013

    • Author(s)
      K. Kawakami, D. Hagiwara, Y. Umena, J.・R. Shen, N. Kamiya
    • Organizer
      2012 OCARINA Annual International Meeting-Launch of the Artificial Photosynthesis Research Center
    • Place of Presentation
      大阪市立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 酸素発生光化学系II複合体における B・クリプトキサンチンの同定2012

    • Author(s)
      川上恵典, 藤井律子, 梅名泰史, 小澤真一郎, 高橋裕一郎, 橋本秀樹, 神谷信夫, 沈建仁
    • Organizer
      カロテノイド研究談話会
    • Place of Presentation
      北海道函館
    • Related Report
      2012 Annual Research Report
  • [Presentation] 光化学系II複合体結晶の高分解能化2012

    • Author(s)
      川上恵典
    • Organizer
      蛋白研セミナー
    • Place of Presentation
      大阪大学蛋白質研究所(招待講演)
    • Related Report
      2012 Annual Research Report
  • [Presentation] How iodide ions inhibit the oxygen evolution of photo system II?2012

    • Author(s)
      K. Kawakami, D. Hagiwara, Y. Umena, J.・R. Shen, N. Kamiya
    • Organizer
      岡山国際シンポジウム
    • Place of Presentation
      岡山大学
    • Related Report
      2012 Annual Research Report
  • [Book] 『光エネルギーによる物質変換の化学』(仮題)2015

    • Author(s)
      川上恵典・神谷信夫
    • Publisher
      三共出版
    • Related Report
      2014 Annual Research Report
  • [Book] 光合成研究と産業応用最前線2014

    • Author(s)
      川上恵典・神谷信夫
    • Total Pages
      405
    • Publisher
      NTS
    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪市立大学複合先端研究機構/プロフィール・業績

    • URL

      http://www.ocarina.osaka-cu.ac.jp/profile/keisuke_kawakami_j.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 大阪市立大学・複合先端研究機構(川上恵典のプロフィール)

    • URL

      http://www.ocarina.osaka-cu.ac.jp/profile/keisuke_kawakami_j.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪市立大学・研究者要覧(川上恵典)

    • URL

      http://rdbsv02.osaka-cu.ac.jp/profile/ja.XsHrP.o5lzyFSrodmBlidA==.html#profile

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪市立大学・複合先端研究機構

    • URL

      http://www.ocarina.osaka-cu.ac.jp/profile/keisuke_kawakami_j.html

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.ocarina.osaka-cu.ac.jp/member_j.html

    • Related Report
      2012 Annual Research Report

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Published: 2012-04-24   Modified: 2019-07-29  

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