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High-throughput analysis of single-cell gene expression in higher organisms

Research Project

Project/Area Number 24687022
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Biophysics
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Taniguchi Yuichi  国立研究開発法人理化学研究所, 生命システム研究センター, ユニットリーダー (90556276)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥27,820,000 (Direct Cost: ¥21,400,000、Indirect Cost: ¥6,420,000)
Fiscal Year 2014: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2012: ¥14,690,000 (Direct Cost: ¥11,300,000、Indirect Cost: ¥3,390,000)
Keywords1分子・1細胞生物学 / 生物物理学 / システム生物学 / 超高感度顕微鏡技術 / 微細加工技術 / 生命反応の物理 / 1分子・1細胞生物学
Outline of Final Research Achievements

We have carried out developments for technological tools to investigate single-molecule gene expression dynamics in single cells of higher organisms in a high-throughput manner. To realize this, we have developed a light-sheet illumination fluorescence microscopy that enables 3D volumetric imaging within the whole volume of thick cells set on a multi-well plate. In addition, we have developed a probing technique to detect mRNA and protein expressions at single molecule levels. Through analysis of gene expression dynamics in Saccharomyces cerevisiae cells for multiple gene targets, we have found a common feature in mechanisms on gene expression noise.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (34 results)

All 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Peer Reviewed: 5 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (22 results) (of which Invited: 15 results) Book (1 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] デラウェア大学(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Genome-wide analysis on protein and mRNA copy numbers in single Escherichia coli cells with single-molecule sensitivity2015

    • Author(s)
      Taniguchi, Y.
    • Journal Title

      Methods in Molecular Biology

      Volume: 1346 Pages: 55-67

    • DOI

      10.1007/978-1-4939-2987-0_5

    • ISBN
      9781493929863, 9781493929870
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 1分子蛍光顕微鏡による1細胞内遺伝子発現の可視化2015

    • Author(s)
      谷口雄一
    • Journal Title

      顕微鏡

      Volume: 50 Pages: 81-85

    • NAID

      130007701769

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1細胞遺伝子発現動態のゲノムワイド解析とモデル化2015

    • Author(s)
      谷口雄一
    • Journal Title

      細胞工学

      Volume: 34 Pages: 251-257

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 細菌の意思決定2014

    • Author(s)
      谷口雄一
    • Journal Title

      パリティ

      Volume: 29 Pages: 12-21

    • NAID

      40020199990

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 1細胞遺伝子発現解析2014

    • Author(s)
      谷口雄一
    • Journal Title

      生体の化学

      Volume: 65 Pages: 410-411

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Protein expression analyses at the single cell level2014

    • Author(s)
      Ohno, M., Karagiannis, P., Taniguchi, Y.
    • Journal Title

      Molecules

      Volume: 19 Pages: 13932-13947

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 遺伝子発現のロバストネス2014

    • Author(s)
      谷口雄一
    • Journal Title

      細胞工学

      Volume: 33 Pages: 13-18

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 単一細胞レベルでの遺伝子発現の多様性2014

    • Author(s)
      谷口雄一
    • Journal Title

      日本微生物生態学会誌

      Volume: 29 Pages: 3-8

    • NAID

      110009806989

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 1細胞内オミックス動態のモデル化2016

    • Author(s)
      谷口雄一
    • Organizer
      生命動態の分子メカニズムと数理シンポジウム
    • Place of Presentation
      シェラトンホテル広島(広島市)
    • Year and Date
      2016-03-26
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 1細胞内多階層オミックス動態の連関性2016

    • Author(s)
      谷口雄一
    • Organizer
      大阪大学・生命機能数理モデル検討会
    • Place of Presentation
      大阪大学(吹田市)
    • Year and Date
      2016-03-09
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 単一細胞における1分子レベルでのmRNA・タンパク質発現ゆらぎの動態観察2015

    • Author(s)
      谷口雄一
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 1細胞内多階層オミックス動態の連関性の解明に向けて2015

    • Author(s)
      谷口雄一
    • Organizer
      RCAST計測・計算・生命科学ワークショップ
    • Place of Presentation
      東京大学(目黒区)
    • Year and Date
      2015-08-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ライトシート顕微鏡による1分子遺伝子発現イメージング2015

    • Author(s)
      谷口雄一
    • Organizer
      QBiC-CDB Quantitative Developmental Biology Workshop
    • Place of Presentation
      理化学研究所(吹田市)
    • Year and Date
      2015-04-14
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 一細胞遺伝子発現動態のゲノムワイド解析とモデル化2015

    • Author(s)
      谷口雄一
    • Organizer
      物性談話会
    • Place of Presentation
      名古屋大学(名古屋市)
    • Year and Date
      2015-01-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 単一大腸菌細胞における遺伝子発現のゆらぎ・ばらつきの定量化2014

    • Author(s)
      谷口雄一
    • Organizer
      日本顕微鏡学会超微形態解析研究部会主催研究会
    • Place of Presentation
      帝京平成大学(豊島区)
    • Year and Date
      2014-11-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 全ゲノムスケールでの遺伝子発現ノイズ・動態の1分子レベルでの定量化2014

    • Author(s)
      谷口雄一
    • Organizer
      第87回日本生化学会年会
    • Place of Presentation
      国立京都国際会館(京都市)
    • Year and Date
      2014-10-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Mining genome-wide datasets of single-cell gene expressions at single-molecule resolution2014

    • Author(s)
      Taniguchi, Y.
    • Organizer
      52th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Sapporo convention center (Sapporo, Japan)
    • Year and Date
      2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 単一細胞レベルでの遺伝子発現のばらつきの法則性2013

    • Author(s)
      谷口雄一
    • Organizer
      定量オミックスワークショップ
    • Place of Presentation
      大阪大学(吹田市)(招待講演)
    • Year and Date
      2013-01-22
    • Related Report
      2012 Annual Research Report
  • [Presentation] Quantifying the E. coli proteome and transcriptome with single-molecule sensitivity in single cells2012

    • Author(s)
      Taniguchi, Y.
    • Organizer
      6th AYECOB
    • Place of Presentation
      BGI-Shenzhen(Shenzhen, China)(基調講演)
    • Year and Date
      2012-12-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] 1細胞スケールでの遺伝子発現の複雑性を理解する2012

    • Author(s)
      谷口雄一
    • Organizer
      日本分子生物学会
    • Place of Presentation
      福岡国際会議場(福岡市)(招待講演)
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] 遺伝子発現のノイズ性の起源2012

    • Author(s)
      谷口雄一
    • Organizer
      超階層シグナル伝達研究の新展開
    • Place of Presentation
      生理学研究所(岡崎市)(招待講演)
    • Year and Date
      2012-10-01
    • Related Report
      2012 Annual Research Report
  • [Presentation] Examining origings of noise in gene expression2012

    • Author(s)
      Taniguchi, Y.
    • Organizer
      50th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Nagoya University(Nagoya, Japan)(招待講演)
    • Year and Date
      2012-09-23
    • Related Report
      2012 Annual Research Report
  • [Presentation] 遺伝子発現の確率性と記憶性

    • Author(s)
      谷口雄一
    • Organizer
      第36回日本分子生物学会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 単一細胞レベルでの遺伝子発現の多様性

    • Author(s)
      谷口雄一
    • Organizer
      第29回日本微生物生態学会
    • Place of Presentation
      鹿児島大学(鹿児島市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Quantifying Gene Expression Heterogeneity in Single Live Cells

    • Author(s)
      Taniguchi, Y.
    • Organizer
      Single Cell Science Symposium
    • Place of Presentation
      RIKEN Yokohama Campus (Yokohama, Japan)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Information Dynamics in Gene Expression Processes

    • Author(s)
      Taniguchi, Y.
    • Organizer
      Information Dynamics in Gene Expression Processes
    • Place of Presentation
      Kyoto International Conference Center (Kyoto, Japan)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 遺伝子発現の分布性

    • Author(s)
      谷口雄一
    • Organizer
      少数性生物学トレーニングコース
    • Place of Presentation
      大阪大学(吹田市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 遺伝子発現過程のシステムバイオロジー

    • Author(s)
      谷口雄一
    • Organizer
      Kyoto International Conference Center (Kyoto, Japan)
    • Place of Presentation
      大阪エキスポパーク(吹田市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Towards Understanding Heterogeneous Gene Expressions at Single Cell Levels

    • Author(s)
      Taniguchi, Y.
    • Organizer
      RNAi, MicroRNAs & Single Cell Biology – 2013 Meeting
    • Place of Presentation
      Hilton Garden Inn Boston-Waltham (Waltham, MA, USA)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 一細胞毎の個性のばらつきを1分子感度で定量化する

    • Author(s)
      谷口雄一
    • Organizer
      QBiCスプリングコース
    • Place of Presentation
      大阪大学(吹田市)
    • Related Report
      2013 Annual Research Report
  • [Book] 1分子ナノバイオ計測(野地博行著) 13章:転写翻訳1細胞定量測定2014

    • Author(s)
      谷口雄一
    • Total Pages
      9
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Patent(Industrial Property Rights)] Microscope, focusing unit, fluid holding unit, and optical unit2014

    • Inventor(s)
      Taniguchi, Y., Nishimura, K.
    • Industrial Property Rights Holder
      独立行政法人理化学研究所
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-04-03
    • Related Report
      2014 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 顕微鏡、焦準器具、及び試料台保持器具2013

    • Inventor(s)
      谷口雄一、西村和哉
    • Industrial Property Rights Holder
      谷口雄一、西村和哉
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2013-079956
    • Filing Date
      2013-04-05
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2012-04-24   Modified: 2022-01-27  

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