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Elucidation of mechanism of molecular dynamics recognition by RNA machineries involved in the thermostable RNA maturation

Research Project

Project/Area Number 24770125
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Functional biochemistry
Research InstitutionEhime University

Principal Investigator

HIRATA Akira  愛媛大学, 理工学研究科, 講師 (60527381)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords酵素の基質認識機構 / 酵素の生理機能 / tRNAプロセシング / アーキア / RNA成熟マシナリー / アーキア(古細菌) / 構造生物学 / 遺伝学 / 生化学 / RNA成熟
Research Abstract

Structural and functional analyses of tRNA splicing enzyme (EndA) from ultra-small archaeon, ARMAN-2, revealed that ARMAN-2 specific loop is involved in the broad substrate specificity of ARMAN-2 EndA. On the other hands, structural, biochemical and genetic analyses of tRNA (m2G10/m22G10) methyltransferase (arcTrm11) in the hyperthermophilic archaeon Thermococcus kodakarensis showed that the crystal structure of arcTrm11 consists of two domains, N-terminal THUMP domain which is involved in the RNA recognition and C-terminal Rossman fold-type catalytic domain, and that arcTrm11 gene is essential for cell viability at high temperature.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (12 results)

All 2013 2012 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (9 results) Remarks (2 results)

  • [Journal Article] X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insight into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.2012

    • Author(s)
      A. Hirata, K. Fujishima, R. Yamagami, T. Kawamura, J. F. Banfield, A. Kanai, and H. Hori
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Issue: 20 Pages: 10554-10566

    • DOI

      10.1093/nar/gks826

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Thermococcus kodakarensis由来tRNAメチル化酵素(Trm- m22G10)の構造機能解析2013

    • Author(s)
      西山聖示、平田章、田村俊浩、堀弘幸
    • Organizer
      第14回極限環境生物学会年会
    • Place of Presentation
      神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] 超好熱性アーキアThermococcus kodakarensis由来tRNATrpの修飾ヌクレオシド分析2013

    • Author(s)
      前田雄太、平田章、長野倫子、土手智裕、鈴木健夫、金井保、鈴木勉、堀弘幸
    • Organizer
      第14回極限環境生物学会年会
    • Place of Presentation
      神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] X-ray crystal structure of the fourth type of tRNA splicing endonuclease from an uncultivated archaeon Candidatus Micrarchaeum acidiphilum (ARMAN-2)2013

    • Author(s)
      Akira Hirata, Kosuke Fujishima, Ryota Yamagamia, Takuya Kawamuraa, Jillian F. Banfiledd, Akio Kanaib and Hiroyuki Hori
    • Organizer
      Thermophiles2013
    • Place of Presentation
      ドイツ
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 超好熱性アーキア Thermococcus kodakarensis 由来 tRNATrp の 修飾ヌクレオシド分析2013

    • Author(s)
      前田雄太、平田 章、長野倫子、土手智裕、鈴木健夫、金井 保、鈴木勉、堀 弘幸
    • Organizer
      第14回極限環境生物学会年会
    • Place of Presentation
      神奈川県
    • Related Report
      2013 Annual Research Report
  • [Presentation] Thermococcus kodakarensis 由来tRNA メチル化酵素(Trm- m22G10) の構造機能解析2013

    • Author(s)
      西山聖示、平田章、田村俊浩、堀弘幸
    • Organizer
      第14回極限環境生物学会年会
    • Place of Presentation
      神奈川県
    • Related Report
      2013 Annual Research Report
  • [Presentation] 世界最小クラスの生命体ARMANにおける4番目のタイプのtRNAスプライシングエンドヌクレアーゼのX線結晶構造解析2012

    • Author(s)
      平田章、藤島皓介、山上龍太、河村卓哉、JF.Banfield、堀弘幸
    • Organizer
      第13回極限環境生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural insight into the evolution and broad substrate specificity of the fourth type of tRNA splicing endonuclease2012

    • Author(s)
      平田章、藤島皓介、山上龍太、河村卓哉、JF.Banfield、堀弘幸
    • Organizer
      9th INTERNATIONAL CONGRESS ON EXTREMOPHILES 2012
    • Place of Presentation
      スペイン
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 極小アーキアにおけるtRNAスプライシングエンドヌクレアーゼの構造機能解析2012

    • Author(s)
      平田章、藤島皓介、山上龍太、河村卓哉、JF.Banfield、堀弘幸
    • Organizer
      第25回日本アーキア研究会
    • Place of Presentation
      兵庫
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 世界最小クラスの生命体ARMANにおける4番目のタイプのtRNAスプライシングエンドヌクレアーゼのX線結晶構造解析2012

    • Author(s)
      平田 章、藤島皓介、山上龍太、河村卓哉、JF. Banfield、堀 弘幸
    • Organizer
      第13回極限環境生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Remarks] 世界最小クラスの生命体ARMANのRNA介在配列除去システムの構造を解明しました

    • URL

      http://www.ehime-u.ac.jp/research/news/detail.html?new_rec=9781

    • Related Report
      2013 Final Research Report
  • [Remarks] 世界最小クラスの生命体ARMANのRNA介在配列除去システムの構造を解明しました。

    • URL

      http://www.ehime-u.ac.jp/research/news/detail.html?new_rec=9781

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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