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Identification of essential elements for the plasmid transfer between different bacteria

Research Project

Project/Area Number 24780087
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionShizuoka University

Principal Investigator

SHINTANI Masaki  静岡大学, 工学研究科, 准教授 (20572647)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsプラスミド / 接合伝達 / 核様態タンパク質
Outline of Final Research Achievements

The objective of this study is to find essential elements for the conjugative transfer of plasmid between different bacteria using pCAR1. Three kinds of nucleotide-associated proteins (NAPs) encoded on pCAR1 (Pmr, Phu, and Pnd) were shown to be important elements for its replication, maintenance and transfer in different host strains. Products of ORF145 and ORF146 on pCAR1 were not essential for the transfer but they may affect the transfer frequency of the plasmid. NAP genes were shown to be distributed on various transmissible plasmids. We successfully developed a method to detect, separate, and analyze ‘transient’ transconjugants, which would be important for the spread of plasmids in different host strains.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (31 results)

All 2015 2014 2013 2012 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 4 results,  Open Access: 1 results) Presentation (17 results) (of which Invited: 7 results) Remarks (5 results)

  • [Journal Article] Effects of three different nucleoid-associated proteins encoded on IncP-7 plasmid pCAR1 on host Pseudomonas putida KT24402015

    • Author(s)
      Suzuki-Minakuchi C., R. Hirotani, M. Shintani, T. Takeda, Y. Takahashi, K. Matsui, D. Vasileva, C.-S. Yun, K. Okada, H. Yamane, and H. Nojiri
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 81 Issue: 8 Pages: 2869-2880

    • DOI

      10.1128/aem.00023-15

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy2015

    • Author(s)
      新谷政己,Zoe Sanchez,金原和秀
    • Journal Title

      Frontiers in Microbiology

      Volume: なし

    • DOI

      10.3389/fmicb.2015.00242

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Modulation of primary cell functions of host Pseudomonas bacteria by conjugative plasmid pCAR12015

    • Author(s)
      Takahashi, Y., M. Shintani, N. Takase, Y. Kazou, F. Kawamura, H. Hara, H. Nishida, K. Okada, H. Yamane, and H. Nojiri
    • Journal Title

      Environmental Microbiology

      Volume: 17 Issue: 1 Pages: 134-155

    • DOI

      10.1111/1462-2920.12515

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function2015

    • Author(s)
      新谷政己,水口(鈴木)千穂,野尻秀昭
    • Journal Title

      Plasmid

      Volume: 印刷中 Pages: 32-44

    • DOI

      10.1016/j.plasmid.2015.04.008

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community2014

    • Author(s)
      Shintani M, Matsui K, Inoue J, Hosoyama A, Ohji S, Yamazoe A, Nojiri H, Kinbara K, Ohkuma M
    • Journal Title

      Appl. Environ. Microbiol.

      Volume: 80 Issue: 1 Pages: 138-145

    • DOI

      10.1128/aem.02571-13

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Conjugative elements: Host chromosome function modifiers2014

    • Author(s)
      新谷政己,高橋裕里香,野尻秀昭
    • Journal Title

      Biodegradative Bacteria

      Volume: 2014 Pages: 129-152

    • DOI

      10.1007/978-4-431-54520-0_7

    • ISBN
      9784431545194, 9784431545200
    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 環境中におけるプラスミドの挙動解析2013

    • Author(s)
      新谷政己,松井一泰,金原和秀,野尻秀昭
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 13 Pages: 125-134

    • NAID

      40020320833

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mobile genetic elements (MGEs) carrying catabolic genes.2013

    • Author(s)
      新谷 政己
    • Journal Title

      Management of Microbial Resources in the Environment” (eds. A. Malik, E. Grohmann, and M. Alves)

      Volume: なし Pages: 167-214

    • DOI

      10.1007/978-94-007-5931-2_8

    • ISBN
      9789400759305, 9789400759312
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 異なる栄養条件下におけるプラスミドの接合伝達頻度の比較解析2012

    • Author(s)
      新谷政己,李美英,松井一泰,大熊盛也,岡田憲典,野尻秀昭
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 12(2) Pages: 163-167

    • NAID

      40019972074

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 接合伝達性プラスミドのモデル環境下における挙動解析2015

    • Author(s)
      片岡大亮,飯田健義,大熊盛也,金原和秀,新谷政己
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学(岡山県,岡山市)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 宿主の状態がプラスミドの接合伝達に及ぼす影響の解析2015

    • Author(s)
      柳田晃輔,松井一泰,新谷政己,水口(鈴木)千穂,岡田憲典,野尻秀昭
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学(岡山県,岡山市)
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 一細胞解析手法によるプラスミドの宿主域解明の試み2015

    • Author(s)
      新谷政己
    • Organizer
      第9回日本ゲノム微生物学会
    • Place of Presentation
      神戸大学(兵庫県,神戸市)
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Behaviors of IncP-1 plasmids in various environments.2015

    • Author(s)
      新谷政己
    • Organizer
      Thailand-Japan Joint Symposium
    • Place of Presentation
      Kasetsert University (タイ王国)
    • Year and Date
      2015-03-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Transfers of degradative plasmids in various environments2015

    • Author(s)
      新谷政己
    • Organizer
      Interdisciplinary Symposium on Environmental Microbiology for Sustainable Society
    • Place of Presentation
      名古屋工業大学(愛知県,名古屋市)
    • Year and Date
      2015-02-05 – 2015-02-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Behaviors of plasmids in various environments2014

    • Author(s)
      新谷政己
    • Organizer
      第3回浜松科学技術研究振興会ミニシンポジウム"Research Frontiers in Environmental Microbiology-Behaviors and Diversity-
    • Place of Presentation
      静岡大学(静岡県,浜松市)
    • Year and Date
      2014-10-25
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] モデル環境下における接合伝達性プラスミドの挙動解析2014

    • Author(s)
      飯田健義, 竹本裕史, 山村杏子, 片岡大亮, 金原和秀, 新谷政己
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松コングレスセンター(静岡県,浜松市)
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] プラスミドの接合伝達に影響を与える環境要因の探索2014

    • Author(s)
      柳田晃輔,松井一泰,新谷政己,水口(鈴木)千穂,岡田憲典,野尻秀昭
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      アクトシティ浜松コングレスセンター(静岡県,浜松市)
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 可動性遺伝因子を介した微生物のコミュニケーション2014

    • Author(s)
      新谷政己
    • Organizer
      第66回日本生物工学会大会シンポジウム「若手が切り拓く “Biofilm/cell-cell communication研究の新展開”」
    • Place of Presentation
      札幌コンベンションセンター(北海道,札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] モデル環境下における接合伝達性プラスミドの挙動解析2014

    • Author(s)
      飯田健義, 竹本裕史, 山村杏子, 片岡大亮, 金原和秀, 新谷政己
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター(北海道,札幌市)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 環境微生物の一細胞レベルの単離と解析2014

    • Author(s)
      新谷政己
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 環境条件がIncP-7群プラスミドpCAR1の接合伝達頻度・宿主域に及ぼす影響の解明2014

    • Author(s)
      柳田晃輔,松井一泰,新谷政己,岡田憲典,野尻秀昭
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県)
    • Related Report
      2013 Research-status Report
  • [Presentation] プラスミドNAH7の受容の可否に影響を及ぼす受容菌Pseudomonas resinovoransゲノム上の遺伝子の解析2014

    • Author(s)
      李美英,高橋裕里香,松井一泰,新谷政己,岡田憲典,野尻秀昭
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県)
    • Related Report
      2013 Research-status Report
  • [Presentation] プラスミドpCAR1にコードされる核様体タンパク質が接合伝達に与える影響の解明2014

    • Author(s)
      松井一泰,廣谷龍輔,武田俊春,尹忠銖,新谷政己,岡田憲典,野尻秀昭
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県)
    • Related Report
      2013 Research-status Report
  • [Presentation] 遺伝因子を介した微生物のコミュニケーション2013

    • Author(s)
      新谷政己
    • Organizer
      第44回中部化学関係学協会支部連合秋季大会
    • Place of Presentation
      静岡大学浜松キャンパス(静岡県)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] IncP-7群プラスミドpCAR1の接合伝達に関与するORF145およびORF146の機能解析2013

    • Author(s)
      新谷政己,徳丸裕樹,金原和秀,野尻秀昭
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学(宮城県)
    • Related Report
      2012 Research-status Report
  • [Presentation] 複合微生物系におけるプラスミド・トランスポゾンの挙動解析

    • Author(s)
      新谷政己
    • Organizer
      第1回先端科学合同セミナー
    • Place of Presentation
      琵琶湖コンファレンスセンター(滋賀県)
    • Related Report
      2012 Research-status Report
  • [Remarks] 金原・新谷研究室

    • URL

      http://163.43.139.71/~tmshint/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 静岡大学教員データベース

    • URL

      https://tdb.shizuoka.ac.jp/RDB/public/Default2.aspx?id=11068&l=0

    • Related Report
      2014 Annual Research Report
  • [Remarks] 静岡大学教員データベース

    • URL

      https://tdb.shizuoka.ac.jp/RDB/public/Default2.aspx?id=11068&l=0

    • Related Report
      2013 Research-status Report
  • [Remarks] 金原・新谷研究室ホームページ

    • URL

      http://163.43.139.71/~tmshint/

    • Related Report
      2013 Research-status Report
  • [Remarks] 金原・新谷研究室ホームページ

    • URL

      http://163.43.139.71/~tmshint/

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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