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Plastid genome evolution in serial secondary plastids of a green-colord dinoflagellate

Research Project

Project/Area Number 24870004
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Biodiversity/Systematics
Research InstitutionUniversity of Tsukuba

Principal Investigator

KAMIKAWA Ryoma  筑波大学, 生命環境系, 特任助教 (40627634)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords葉緑体 / ゲノム / 進化 / 細胞内共生 / 葉緑体置換 / ゲノム進化 / 分子系統解析
Research Abstract

In this study, in order to retrace origin and evolution of plastids in the green colored dinoflagellate Lepidodinium, its plastid genome was sequenced. Nearly complete sequence of the plastid genome was obtained by the next generation sequencing analysis. Phylogenetic analysis with a large plastid gene dataset and comparative genomics revealed that the Lepidodinium plastids are derived from a green alga closely related to Pedinophyceae and drastic genome rearrangement has been occurred after the plastid acquisition.

Report

(2 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • Research Products

    (21 results)

All 2013 2012 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (15 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Ardenticatena maritima gen. nov., sp. nov., a ferric iron- and nitrate-reducing bacterium of the phylum Chloroflexi isolated from an iron-rich coastal hydrothermal field, and description of Ardenticateniaclassis nov.2013

    • Author(s)
      Kawaichi,S., Ito,N., Kamikawa,R., Sugawara,T., Yoshida,T. and Sako,Y.
    • Journal Title

      Int. J. Syst. Evol. Microbiol

      Volume: 63 Issue: Pt_8 Pages: 1-1

    • DOI

      10.1099/ijs.0.046532-0

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina.2012

    • Author(s)
      Nishimura Y, Kamikawa R, Hashimoto T, Inagaki Y.
    • Journal Title

      PLoS One

      Volume: 7 Issue: 5 Pages: e37307-e37307

    • DOI

      10.1371/journal.pone.0037307

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of elongation factor-like (EFL) protein in Rhizaria is revised by radiolarian EFL gene Sequences.2012

    • Author(s)
      Ishitani Y., Kamikawa R., Yabuki A., Tsutiya M., Inagaki Y. Takihita K.
    • Journal Title

      Journal of Eukaryotic Microbiology

      Volume: 59 Issue: 4 Pages: 367-373

    • DOI

      10.1111/j.1550-7408.2012.00626.x

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Monitoring harmful microalgae by using a molecular biological techneque.2012

    • Author(s)
      Shiraishi T, Kamikawa R, Sako Y, Imai I.
    • Journal Title

      Food Quality

      Volume: - Pages: 15-28

    • DOI

      10.5772/34251

    • ISBN
      9789535105602
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ardenticatena maritima gen. nov., sp. nov., a ferric iron- and nitrate-reducing bacterium of the phylum Chloroflexi isolated from an iron-rich coastal hydrothermal field, and description of Ardenticatenia classis nov

    • Author(s)
      Kawaichi S, Itoh N, Ryoma Kamikawa, Sugawara T, Yoshida T, Sako Y
    • Journal Title

      Int J Syst Evol Microbiol

      Volume: (in press)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] ミトコンドリア関連オルガネラの縮退進化.2012

    • Author(s)
      神川龍馬、Kolisko M、Andersson JO、Simpson AGB、Roger AJ、稲垣祐司、橋本哲男
    • Organizer
      日本ミトコンドリア学会 第12回年会
    • Place of Presentation
      筑波大学
    • Year and Date
      2012-12-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 新奇単細胞真核生物Tsukubamonas globosaの系統的位置とミトコンドリアゲノム2012

    • Author(s)
      神川 龍馬, 西村 祐貴, 矢吹 彬憲, Kolisko M, Simpson AGB, Roger AJ, 石田 健一郎, 橋本 哲男, 稲垣 祐司
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡マリンメッセ
    • Year and Date
      2012-12-12
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] 真核生物における翻訳伸長因子EF-1alphaとEFLを両有するゲノムの分布2012

    • Author(s)
      神川 龍馬, 西村 祐貴, 左子 芳彦, 橋本哲男, 稲垣 祐司
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡マリンメッセ
    • Year and Date
      2012-12-12
    • Related Report
      2012 Final Research Report
  • [Presentation] 嫌気環境に適応したフォルニカータ生物群におけるミトコンドリア関連オルガネラのトランスクリプトーム比較解析2012

    • Author(s)
      神川 龍馬, Kolisko M, Andersson J, Simpson AGB, Roger AJ, 稲垣 祐司, 橋本 哲男
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡マリンメッセ
    • Year and Date
      2012-12-12
    • Related Report
      2012 Final Research Report
  • [Presentation] ミトコンドリアにおける機能縮退進化2012

    • Author(s)
      神川龍馬. 断捨離
    • Organizer
      第1回日本細胞共生学会若手の会(JSPYS)
    • Place of Presentation
      筑波大学下田臨海実験センター
    • Year and Date
      2012-11-09
    • Related Report
      2012 Final Research Report
  • [Presentation] フォルニカータ生物群におけるミトコンドリア関連オルガネラの縮退進化 ハイドロジェノソームからマイトソームへ2012

    • Author(s)
      神川龍馬、Kolisko M, Andersson JO, Simpson AGB、Roger AJ, 稲垣祐司、橋本哲男
    • Organizer
      第72回寄生虫学会東日本支部会/第10回分子寄生虫マラリアフォーラム
    • Place of Presentation
      群馬大学
    • Year and Date
      2012-10-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Mitohondrial evolution: from genomes to metabolisms2012

    • Author(s)
      神川龍馬
    • Organizer
      形質転換植物デザイン研究拠点研究セミナー
    • Place of Presentation
      筑波大学遺伝子実験センター
    • Year and Date
      2012-09-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Searching for missing pieces in natural environments: With the emphasis on the importance of culture strains of enigmatic eukaryotes for global eukaryotic phylogeny2012

    • Author(s)
      Ryoma Kamikawa, Yabuki A, Hashimoto T, Nishimura Y, Inagaki Y
    • Organizer
      JSME2012
    • Place of Presentation
      Toyohashi, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] The phylogenetic position and mitochondrial genome sequence of the enigmatic discobid Tsukubamonas globosa2012

    • Author(s)
      Ryoma Kamikawa, Nishimura Y, Yabuki A, Kolisko M, Simpson AGB, Roger AJ, Ishida K, Hashimoto T, Inagaki Y
    • Organizer
      Protist2012
    • Place of Presentation
      University of Oslo, Norway
    • Related Report
      2012 Final Research Report
  • [Presentation] 光合成能進化研究のモデルとしての無色珪藻類Nitzschia spp2012

    • Author(s)
      神川龍馬,吉田昌樹,平美砂歌,石田健一郎,橋本哲男,稲垣祐司
    • Organizer
      第36回日本藻類学会
    • Place of Presentation
      北海道大学
    • Related Report
      2012 Final Research Report
  • [Presentation] Searching for missing pieces in natural environments: With the emphasis on the importance of culture strains of enigmatic eukaryotes for global eukaryotic phylogeny.2012

    • Author(s)
      Kamikawa R, Yabuki A, Hashimoto T, Nishimura Y, Inagaki Y
    • Organizer
      JSME2012
    • Place of Presentation
      Toyohashi University of Technology
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ミトコンドリア関連オルガネラの縮退進化

    • Author(s)
      神川龍馬、Kolisko M、Andersson JO、Simpson AGB、Roger AJ、稲垣祐司
    • Organizer
      日本ミトコンドリア学会 第12回年会
    • Place of Presentation
      筑波大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 真核生物における翻訳伸長因子EF-1alphaとEFLを両有するゲノムの分布

    • Author(s)
      神川 龍馬, 西村 祐貴, 左子 芳彦, 橋本 哲男, 稲垣 祐司
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡マリンメッセ
    • Related Report
      2012 Annual Research Report
  • [Presentation] 嫌気環境に適応したフォルニカータ生物群におけるミトコンドリア関連オルガネラのトランスクリプトーム比較解析

    • Author(s)
      神川 龍馬, Kolisko M, Andersson JO, Simpson AGB, Roger AJ, 稲垣 祐司, 橋本 哲男
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡マリンメッセ
    • Related Report
      2012 Annual Research Report
  • [Presentation] Mitohondrial evolution: From genomes to metabolisms

    • Author(s)
      神川龍馬
    • Organizer
      筑波大学遺伝子実験センター 形質転換植物デザイン研究拠点 研究セミナー
    • Place of Presentation
      筑波大学遺伝子実験センター
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] Monitoring harmful microalgae by using a molecular biological techneque2012

    • Author(s)
      Shiraishi T, Ryoma Kamikawa, Sako Y, Imai I
    • Related Report
      2012 Final Research Report

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Published: 2012-11-27   Modified: 2019-07-29  

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