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Topological embedding of chromatin interactions for reconstructing DNA 3d structures

Research Project

Project/Area Number 24KF0051
Research Category

Grant-in-Aid for JSPS Fellows

Allocation TypeMulti-year Fund
Section外国
Review Section Basic Section 12040:Applied mathematics and statistics-related
Research InstitutionKyoto University

Principal Investigator

平岡 裕章  京都大学, 高等研究院, 教授 (10432709)

Co-Investigator(Kenkyū-buntansha) HACQUARD OLYMPIO  京都大学, 高等研究院, 外国人特別研究員
Project Period (FY) 2024-04-23 – 2026-03-31
Project Status Granted (Fiscal Year 2024)
Budget Amount *help
¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2025: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2024: ¥700,000 (Direct Cost: ¥700,000)
Outline of Research at the Start

-Literature study on hypergraphs
-Development of a topologically faithful embedding method
-Using topological tools to extract biological markers and filter outlier interactions
-Perform a graph clustering on the embedded data
-Classify different cell types

URL: 

Published: 2024-04-24   Modified: 2024-07-03  

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