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Elucidation of Multidrug recognition mechanism of ABC transporter and development of its novel inhibitor

Research Project

Project/Area Number 25251006
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Kato Hiroaki  京都大学, 薬学研究科(研究院), 教授 (90204487)

Co-Investigator(Kenkyū-buntansha) WATANABE Bunta  京都大学, 化学研究所, 助教 (10544637)
NAKATSU Toru  京都大学, 大学院薬学研究科, 准教授 (50293949)
Co-Investigator(Renkei-kenkyūsha) YAMAGUCHI Tomohiro  京都大学, 大学院薬学研究科, 助教 (80346791)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥43,030,000 (Direct Cost: ¥33,100,000、Indirect Cost: ¥9,930,000)
Fiscal Year 2015: ¥12,090,000 (Direct Cost: ¥9,300,000、Indirect Cost: ¥2,790,000)
Fiscal Year 2014: ¥12,090,000 (Direct Cost: ¥9,300,000、Indirect Cost: ¥2,790,000)
Fiscal Year 2013: ¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Keywords生体膜 / 構造機能相関 / 受容体 / X線結晶構造解析 / 生体膜及び受容体 / ABCトランスポーター / 多剤耐性 / X線結晶解析 / 薬理学
Outline of Final Research Achievements

We discovered an ATP binding cassette (ABC) multidrug transporter of which amino acid sequence and transporter function are very similar to those of human P-glycoprotein from a thermophilic eukaryote, Cyanidioschyzon merolae, and we named CmABCB1. The crystal structure of CmABCB1 complexed with its specific inhibitor, aCAP at 2.4 A resolution. This is the structure determination of an ABC transporter at the highest resolution in the year 2014. The inhibitor aCAP has a unique binding mechanism by which it clamps the transmembrane helices from the outside, fixing the CmABCB1 structure in an inward-open conformation. Using structure-based mutagenesis, we defined several important residues that act as a substrate gatekeeper, a transition switch, and a substrate hook associated with the underlying transport mechanism. These studies provide mechanistic insight into substrate recognition and transport by ABCB1 type of multidrug transporters, as well as a blueprint for drug development.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (26 results)

All 2016 2015 2014 2013 Other

All Journal Article (10 results) (of which Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (15 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Remarks (1 results)

  • [Journal Article] Structural Pharmacology for Receptors and Transporters2016

    • Author(s)
      清水敏之、加藤博章
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 136 Issue: 2 Pages: 171-172

    • DOI

      10.1248/yakushi.15-00229-F

    • NAID

      130005121479

    • ISSN
      0031-6903, 1347-5231
    • Year and Date
      2016-02-01
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Motion Tree delineates hierarchical structure of protein dynamics observed in molecular dynamics simulation2015

    • Author(s)
      Kei Moritsugu, Ryotaro Koike, Kouki Yamada, Hiroaki Kato and Akinori Kidera
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 7 Pages: e0131583-e0131583

    • DOI

      10.1371/journal.pone.0131583

    • NAID

      120005763400

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structure-activity relationship studies of insect and plant steroid hormones2015

    • Author(s)
      Watanabe, B.
    • Journal Title

      Journal of Pesticide Science

      Volume: 40 Issue: 3 Pages: 146-151

    • DOI

      10.1584/jpestics.J15-04

    • NAID

      130005094226

    • ISSN
      1348-589X, 1349-0923
    • Related Report
      2015 Annual Research Report
    • Open Access
  • [Journal Article] Stereospecific Inhibitory Effects of CCG-1423 on the Cellular Events Mediated by Myocardin-Related Transcription Factor A2015

    • Author(s)
      渡辺文太、南沙紀、石田秀明、吉岡隆三、中川好秋、森田強、林謙一郎
    • Journal Title

      PLOS ONE

      Volume: 10(8) Issue: 8 Pages: e0136242-e0136242

    • DOI

      10.1371/journal.pone.0136242

    • NAID

      120005763438

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis and Inhibitory Activity of Substrate-Analog Fructosyl Peptide Oxidase Inhibitors2015

    • Author(s)
      Watanabe, B.; Ichiyanagi, A.; Hirokawa, K.; Gomi, K.; Nakatsu, T.; Kato, H.; Kajiyama, N.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 25 Issue: 18 Pages: 3910-3913

    • DOI

      10.1016/j.bmcl.2015.07.045

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] グルタチオン代謝とチオールケミストリー2015

    • Author(s)
      渡辺文太;平竹潤
    • Journal Title

      化学と生物

      Volume: 53 Pages: 354-361

    • Related Report
      2015 Annual Research Report
  • [Journal Article] ヒトABC多剤排出トランスポーター類似タンパク質の立体構造決定と新規阻害剤の創製2015

    • Author(s)
      ・加藤博章
    • Journal Title

      ファルマシア

      Volume: 151 Pages: 315-319

    • NAID

      130007448057

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of the structural and functional roles of coupling helices in the ATP-binding cassette transporter MsbA through enzyme assays and molecular dynamics simulations2014

    • Author(s)
      Furuta, T., Yamaguchi, T., Kato, H., Sakurai, M.
    • Journal Title

      Biochemistry

      Volume: 53 Issue: 26 Pages: 4261-4272

    • DOI

      10.1021/bi500255j

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and Mechanism of a Eukaryotic ABC Multidrug Transporter2014

    • Author(s)
      小段篤史、山口知宏、中津亨、加藤博章
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 56 Issue: 4 Pages: 224-229

    • DOI

      10.5940/jcrsj.56.224

    • NAID

      130004688353

    • ISSN
      0369-4585, 1884-5576
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog2014

    • Author(s)
      Atsushi Kodan, Tomohiro Yamaguchi, Toru Nakatsu, Keita Sakiyama, Christopher Hipolito, Akane Fujioka, Ryo Hirokane, Keiji Ikeguchi, Bunta Watanabe, Jun Hiratake, Yasuhisa Kimura, Hiroaki Suga, Kazumitsu Ueda, Hiroaki Kato
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 111 Issue: 11 Pages: 4049-4054

    • DOI

      10.1073/pnas.1321562111

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Serial Femtosecond Crystallography of ABC Transporter2016

    • Author(s)
      Oyama Ryo, Pan Dongqing, Nakatsu Toru, Sato Tomomi, Yamaguchi Tomohiro, Kodan Atsushi, Ueda Kazumitsu, Iwata So, Kato Hiroaki
    • Organizer
      6th Special Meeting, ATP-Binding Cassette (ABC) Proteins: From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      Innsbruck (Austria)
    • Year and Date
      2016-03-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Crystallographic study of the ABC transporter CmABCB1 covalently bound to substrate derivatives2016

    • Author(s)
      Matsuoka Keita, Hirokane Ryo, Kodan Atsushi, Yamaguchi Tomohiro, Nakatsu Toru, Ueda Kazumitsu, Kato Hiroaki
    • Organizer
      6th Special Meeting, ATP-Binding Cassette (ABC) Proteins: From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      Innsbruck (Austria)
    • Year and Date
      2016-03-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Altering stability of a transmembrane protein, MsbA by structural comparison with its thermophilic homolog2015

    • Author(s)
      Ka Lu, Yamaguchi Tomohiro, Nakatsu Toru, Kato Hiroaki
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, Hawaii (USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] NMR解析を目指したABCトランスポーターの大腸菌高密度培養による安定同位体標識系の確立2015

    • Author(s)
      小田健人、山口知宏、宮ノ入洋平、中津 亨、甲斐荘正恒、加藤博章
    • Organizer
      日本薬学会近畿支部総会・大会
    • Place of Presentation
      大阪大谷大学(大阪府富田林市)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Trp変異導入によるABC多剤排出トランスポーターと基質の相互作用解析2015

    • Author(s)
      大塚哲央、山口知宏、中津亨、加藤博章
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸学院大学(神戸市)
    • Year and Date
      2015-03-25 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] ATP Binding Cassetteトランスポーターの構造薬理学2014

    • Author(s)
      加藤博章
    • Organizer
      平成26年度日本結晶学会年会
    • Place of Presentation
      東京大学農学部(東京都文京区)
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structural basis for allosteric inhibition of P-glycoprotein homologue CmABCB12014

    • Author(s)
      Kato, H
    • Organizer
      The 3rd international symposium on chemical biology of natural products
    • Place of Presentation
      Life Science Center (Osaka)
    • Year and Date
      2014-10-28 – 2014-10-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Lysの13C-ジメチル化によるABC多剤排出トランスポーターのNMR解析2014

    • Author(s)
      宇都宮裕人、山口知宏、宮ノ入洋平、武田光広、中津亨、甲斐荘正恒、加藤博章
    • Organizer
      第64回日本薬学会近畿支部総会大会
    • Place of Presentation
      京都薬科大学(京都市)
    • Year and Date
      2014-10-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] SACLAによるABCトランスポーターおよびホタル・ルシフェラーゼのX線結晶構造解析2014

    • Author(s)
      潘東青、中津亨、山口知宏、小段篤史、小川和浩、松嶌一樹、城地保昌、登野健介、矢橋牧名、鈴木守、南後恵理子、岩田想、加藤 博章
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール マリネリア(横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] High-resolution crystal structure of an ABC multidrug exporter from Cyanidioschyzon merolae, a thermophilic unicellular eukaryote2014

    • Author(s)
      Atsushi Kodan, Tomohiro Yamaguchi, Toru Nakatsu, Keita Sakiyama, Christopher J. Hipolito, Akane Fujioka, Ryo Hirokane, Yasuhisa Kimura, Hiroaki Suga, Kazumitsu Ueda, Hiroaki Kato
    • Organizer
      ABC2014, 5th FEBS Special Meeting, ATP-Binding Cassette (ABC) Proteins: From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      Hotel Grauer Bär (Innsbruck, Austria)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Structure-based functional aspects of the ABC multidrug transporter, CmABCB1 from a thermophilic eukaryote2014

    • Author(s)
      Tomohiro Yamaguchi, Atsushi Kodan, Toru Nakatsu, Keita Sakiyama, Christopher J. Hipolito, Akane Fujioka, Ryo Hirokane, Yasuhisa Kimura, Hiroaki Suga, Kazumitsu Ueda, Hiroaki Kato
    • Organizer
      ABC2014, 5th FEBS Special Meeting, ATP-Binding Cassette (ABC) Proteins: From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      Hotel Grauer Bär (Innsbruck, Austria)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ABC多剤排出トランスポーターにおける基質取込の立体構造基盤2014

    • Author(s)
      山口知宏、小段篤史、中津亨、植田和光、加藤博章
    • Organizer
      日本薬学会第134回年会
    • Place of Presentation
      熊本大学(熊本県熊本市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 好熱性真核生物のABC多剤排出トランスポーターのX線結晶構造解析2013

    • Author(s)
      廣兼諒、小段篤史、中津亨、山口知宏、植田和光、加藤博章
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取県鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of two coupling helices between transmembrane and cytosolic domains in ABC transporter2013

    • Author(s)
      Tomohiro Yamaguchi, Ryohei Jinushi, Sho Masuko, Toru Nakatsu, Hiroaki Kato
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ABCトランスポーターのATP加水分解基礎活性の調節部位の探索2013

    • Author(s)
      益子祥、山口知宏、中津亨、加藤博章
    • Organizer
      第35回生体膜と薬物の相互作用シンポジウム
    • Place of Presentation
      東京大学大学院薬学系研究科(東京都文京区)
    • Related Report
      2013 Annual Research Report
  • [Remarks] がん化学療法の障害となる多剤排出トランスポーターの結晶構造

    • URL

      http://www.kyoto-u.ac.jp/ja/news_data/h/h1/news6/2013_1/140220_1.htm

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-15   Modified: 2019-07-29  

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