Development of analysis theories on life dynamical systems with hierarchy and robustness

• Project/Area Number: 25287105
• Research Category: Grant-in-Aid for Scientific Research (B)
• Allocation Type: Partial Multi-year Fund
• Section: 一般
• Research Field: Biological physics/Chemical physics/Soft matter physics
• Research Institution: Hokkaido University
• Principal Investigator: Komatsuzaki Tamiki 北海道大学, 電子科学研究所, 教授 (30270549)
• Co-Investigator(Kenkyū-buntansha): LI Chun-Biu 北海道大学, 電子科学研究所, 准教授 (90397795) ; TERAMOTO Hiroshi 北海道大学, 電子科学研究所, 助教 (90463728)
• Project Period (FY): 2013-04-01 – 2016-03-31
• Project Status: Completed (Fiscal Year 2015)
• Budget Amount: ¥19,110,000 (Direct Cost: ¥14,700,000、Indirect Cost: ¥4,410,000); Fiscal Year 2015: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000); Fiscal Year 2014: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000); Fiscal Year 2013: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
• Keywords: 1分子計測 / 化学反応動力学 / カオス理論 / ネットワーク / 反応経路 / エネルギー地形 / 反応ネットワーク / 相空間構造 / 1分子時系列解析 / 反応ダイナミクス / 遷移状態 / 相空間幾何学 / 化学反応理論 / 状態遷移ネットワーク / カオス / データ駆動型モデリング / 時空間階層 / データ駆動型数理モデリング

Outline of Final Research Achievements

By applying chaos theory developed in the field of celestial mechanics into microscopic chemical reactions, we predicted theoretically that a discrete switching between the reaction/non-reaction coordinate emerges as the total energy increases, and provided an experimental means to prove this unknown phenomenon. From experimentally observed, single molecule time series whose signal-to-noise ratio is low, we developed data-driven mathematical science to reconstruct the underlying information such as network structures and energy landscapes with properly elucidating the measurement errors and errors arising from finiteness of the data, and confirmed their versatility experimentally.

Research Products

• [Journal Article] Extracting subcellular fibrillar alignment with error estimation: Application to microtubules (2016)
  • Author(s): Satoru Tsugawa, Nathan Hervieux, Olivier Hamant, Arezki Boudaoud, Richard S. Smith, Chun-Biu Li and Tamiki Komatsuzaki
  • Journal Title: Biophys. J Volume: 印刷中
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] ATP hydrolysis assists Phosphate release and promotes reaction ordering in F1-ATPase (2015)
  • Author(s): Li, C. B., Ueno, H., Watanabe, R., Noji, H., & Komatsuzaki, T.
  • Journal Title: Nature Communications Volume: 6 Issue: 1 Pages: 10223-10223
  • DOI: 10.1038/ncomms10223
  • NAID: 120005702360
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] Deciphering Time Scale Hierarchy in Reaction Networks (2015)
  • Author(s): Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
  • Journal Title: The Journal of Physical Chemistry B Volume: 120 Issue: 8 Pages: 1961-1971
  • DOI: 10.1021/acs.jpcb.5b09941
  • Peer Reviewed
• [Journal Article] Kinetic Analysis for the Multistep Profiles of Organic Reactions: Significance of the Conformational Entropy on the Rate Constants of the Claisen Rearrangement (2015)
  • Author(s): Yosuke Sumiya, Yutaka Nagahata, Tamiki Komatsuzaki, Tetsuya Taketsugu, Satoshi Maeda
  • Journal Title: The Journal of Physical Chemistry Volume: 119 Issue: 48 Pages: 11641-11649
  • DOI: 10.1021/acs.jpca.5b09447
  • Peer Reviewed
• [Journal Article] Mechanism and Experimental Observability of Global Switching Between Reactive and Nonreactive Coordinates at High Total Energies (2015)
  • Author(s): H. Teramoto, M. Toda, H. Kono, M.Takahashi, T. Komatsuzaki
  • Journal Title: Physical Review Letters Volume: 115 Issue: 9 Pages: 093003-093003
  • DOI: 10.1103/physrevlett.115.093003
  • NAID: 120005853086
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] Breakdown Mechanisms of Normally Hyperbolic Invariant Manifolds (2015)
  • Author(s): H. Teramoto, M. Toda, T. Komatsuzaki
  • Journal Title: Nonlinearity Volume: 28 Issue: 8 Pages: 2677-2698
  • DOI: 10.1088/0951-7715/28/8/2677
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series (2015)
  • Author(s): J. Nicholas Taylor, Chun-Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
  • Journal Title: Scientific Reports Volume: 5 Issue: 1 Pages: 9174-9174
  • DOI: 10.1038/srep09174
  • NAID: 120005600754
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] トップダウンとボトムアップの橋渡し (2014)
  • Author(s): 小松崎民樹
  • Journal Title: 生体の科学 Volume: 65 Pages: 444-445
  • Peer Reviewed
• [Journal Article] Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging (2014)
  • Author(s): Hideyuki Yaginuma, Shinnosuke Kawai, Kazuhito V. Tabata, Keisuke Tomiyama, Akira Kakizuka, Tamiki Komatsuzaki, Hiroyuki Noji, and Hiromi Imamura
  • Journal Title: Scientific Reports Volume: 4 Issue: 1 Pages: 6522-6522
  • DOI: 10.1038/srep06522
  • NAID: 120005575159
  • Peer Reviewed / Open Access
• [Journal Article] Handling Noisy Data from Single Molecule Experiments (2014)
  • Author(s): Chun-Biu Li, Tamiki Komatsuzaki
  • Journal Title: Seibutsu Butsuri Volume: 54 Issue: 5 Pages: 257-258
  • DOI: 10.2142/biophys.54.257
  • NAID: 130004794709
  • ISSN: 0582-4052, 1347-4219
  • Peer Reviewed / Open Access
• [Journal Article] A new method to improve validity range of Lie canonical perturbation theory: with a central focus on a concept of non‐blow‐up region (2014)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Journal Title: Theoretical Chemistry Account Volume: 133 Issue: 11
  • DOI: 10.1007/s00214-014-1571-9
  • NAID: 120005650128
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Local-heterogeneous responses and transient dynamics of cage breaking (2014)
  • Author(s): Preetom Nag, Hiroshi Teramoto, Chun-Biu Li, Joseph Z. Terdik, Norbert F. Scherer, Tamiki Komatsuzaki
  • Journal Title: The Journal of Chemical Physics Volume: 141 Issue: 10
  • DOI: 10.1063/1.4894866
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis (2014)
  • Author(s): Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Christy F. Landes
  • Journal Title: The Journal of Physical Chemistry Letters Volume: 5 Issue: 18 Pages: 3157-3161
  • DOI: 10.1021/jz501435p
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Numerical Construction of Estimators for Single-Molecule Fluorescence Measurements (2013)
  • Author(s): Shinnosuke Kawai, David Cooper, Christy F. Landes, Henning D. Mootz, Haw Yang, Tamiki Komatsuzaki
  • Journal Title: The Journal of Physical Chemistry B Volume: 117 Issue: 27 Pages: 8061-8074
  • DOI: 10.1021/jp402328m
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Reactivity boundaries to separate the fate of a chemical reaction associated with an index-two saddle (2013)
  • Author(s): Y. Nagahata, H. Teramoto, C.-B. Li, S. Kawai, and T. Komatsuzaki
  • Journal Title: Physical Review E Volume: 87 Issue: 6
  • DOI: 10.1103/physreve.87.062817
  • NAID: 120005510939
  • Peer Reviewed
• [Journal Article] Aggregated Markov Model Using Time Series of Single Molecule Dwell Times with Minimum Excessive Information (2013)
  • Author(s): Chun-Biu Li, Tamiki Komatsuzaki
  • Journal Title: Physical Review Letters Volume: 111 Issue: 5 Pages: 058301-058301
  • DOI: 10.1103/physrevlett.111.058301
  • NAID: 120005333588
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] Detecting invariant manifolds as stationary Lagrangian coherent structures in autonomous dynamical systems (2013)
  • Author(s): Hiroshi Teramoto, George Haller and Tamiki Komatsuzaki
  • Journal Title: Chaos Volume: 23 Issue: 4
  • DOI: 10.1063/1.4824314
  • NAID: 120005385313
  • Peer Reviewed
• [Journal Article] Reactivity boundaries for chemical reactions associated with higher index and multiple saddles (2013)
  • Author(s): Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
  • Journal Title: Physical Review E Volume: 88 Issue: 4
  • DOI: 10.1103/physreve.88.042923
  • NAID: 120005367435
  • Peer Reviewed
• [Journal Article] Spatio-temporal Hierarchy in the Dynamics of a Minimalist Protein Model (2013)
  • Author(s): Yasuhiro Matsunaga, Akinori Baba, Chun Biu Li, John Straub, Mikito Toda, Tamiki Komatsuzaki, R. Berry
  • Journal Title: The Journal of Chemical Physics Volume: 139 Issue: 21 Pages: 215101-215101
  • DOI: 10.1063/1.4834415
  • NAID: 120005385312
  • Peer Reviewed / Open Access
• [Journal Article] Non-Markovian Properties and Multiscale Hidden Markovian Network Buried in Single Molecule Time Series (2013)
  • Author(s): Tahmina Sultana, Hiroaki Takagi, Miki Morimatsu, Hiroshi Teramoto, Chun-Biu Li, Yasushi Sako, Tamiki Komatsuzaki
  • Journal Title: The Journal of Chemical Physics Volume: 139 Issue: 24 Pages: 245101-245101
  • DOI: 10.1063/1.4848719
  • NAID: 120005385318
  • Peer Reviewed / Open Access
• [Presentation] Molecular Data Science Perspectives for Individuality Covering from Molecules to Cells (2016)
  • Author(s): 小松崎 民樹
  • Organizer: 統合生命医科学研究センター疾患生物学セミナー
  • Place of Presentation: 理化学研究所横浜キャンパス(神奈川県横浜市)
  • Year and Date: 2016-03-18
  • Invited
• [Presentation] Classification of Electron Energy Level Crossings in terms of the Theory of Singularities and Analysis of Non-Adiabatic Transitions around the Crossings (2016)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: Computational Chemistry (CC) Symposium in ICCMSE
  • Place of Presentation: Athens, Greece
  • Year and Date: 2016-03-17
  • Int'l Joint Research / Invited
• [Presentation] Classification of Hamiltonians in neighborhoods of electron energy level crossings in terms of the theory of singularities (2016)
  • Author(s): 寺本央
  • Organizer: 理論分子科学・分子非線形科学のこれまでとこれから
  • Place of Presentation: 東京大学駒場リサーチキャンパス(東京都目黒区)
  • Year and Date: 2016-03-05
• [Presentation] Classification of Electron Energy Level Crossings in terms of the Theory of Singularities and Analysis of Non-Adiabatic Transitions around the Crossings (2016)
  • Author(s): 寺本央, 戸田幹人, 小松崎民樹
  • Organizer: 偏微分方程式姫路研究会
  • Place of Presentation: イーグレ姫路(兵庫県姫路市)
  • Year and Date: 2016-03-02
  • Invited
• [Presentation] Toward deciphering cell individuality in systems biology (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Symposium #137 Life at Small Copy Numbers (The 2015 International Chemical Congress of Pacific Basin Societies)
  • Place of Presentation: Hawaii, USA
  • Year and Date: 2015-12-19
  • Int'l Joint Research / Invited
• [Presentation] Energy landscapes and conformation network learned from single molecule time series (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)
  • Place of Presentation: Hawaii, USA
  • Year and Date: 2015-12-15
  • Int'l Joint Research / Invited
• [Presentation] 特異点論によるバンド間交差の分類 (2015)
  • Author(s): 寺本 央, 戸田 幹人, 近藤 憲治, 小松崎 民樹
  • Organizer: 第1回「トポロジーが紡ぐ物質科学のフロンティア」領域研究会
  • Place of Presentation: 京都大学芝蘭会館(京都府京都市)
  • Year and Date: 2015-12-11
• [Presentation] Dynamical Reaction Theory: Beyond the conventional perturbation theory (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: Colloquium on kinetics and scattering theory for astrophysics(in a part of the extended workshop “Theory of Gas Phase Scattering and Reactivity for Astrophysics”)
  • Place of Presentation: Potsdam, Germany
  • Year and Date: 2015-11-16
  • Int'l Joint Research / Invited
• [Presentation] Phase Space geometry and Chemical Reaction Dynamics: Past, Present, and Future (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Colloquium on kinetics and scattering theory for astrophysics(in a part of the extended workshop “Theory of Gas Phase Scattering and Reactivity for Astrophysics”)
  • Place of Presentation: Potsdam, Germany
  • Year and Date: 2015-11-16
  • Int'l Joint Research / Invited
• [Presentation] Developing high precision algorithm to predict observation timescale hierarchy of an isomerization reaction network (2015)
  • Author(s): Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Tetsuya Taketsugu, Tamiki Komatsuzaki
  • Organizer: The 16th RIES-Hokudai International Symposium
  • Place of Presentation: Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido
  • Year and Date: 2015-11-10
  • Int'l Joint Research
• [Presentation] Classification and Control of electron energy level crossings in terms of the theory of singularity (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: The 16th RIES-Hokudai International Symposium
  • Place of Presentation: Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido
  • Year and Date: 2015-11-10
  • Int'l Joint Research
• [Presentation] Kinetics of Multiple conductance levels of Mechanosensitive Ion Channel (2015)
  • Author(s): Genming Wang, Chun-Biu Li, Hitoshi Tatsumi, Tamiki Komatsuzaki
  • Organizer: The 16th RIES-Hokudai International Symposium
  • Place of Presentation: Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido
  • Year and Date: 2015-11-10
  • Int'l Joint Research
• [Presentation] The Onset of Non-equilibrium Effects at High Temperature in the Reaction Kinetics of F1-ATPase (2015)
  • Author(s): Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
  • Organizer: The 16th RIES-Hokudai International Symposium
  • Place of Presentation: Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido
  • Year and Date: 2015-11-10
  • Int'l Joint Research
• [Presentation] マルコフ連鎖の時間階層的クラスタリング (2015)
  • Author(s): 永幡 裕, 前田 理, 寺本 央, Chun-Biu Li, 武次 徹也, 小松崎 民樹
  • Organizer: ERATO湊離散構造処理系プロジェクト 「2015年度 秋のワークショップ」
  • Place of Presentation: 丸駒温泉(北海道千歳市)
  • Year and Date: 2015-11-08
• [Presentation] 特異点論を用いた非断熱交差の安定性と分岐の解析 (2015)
  • Author(s): 寺本央
  • Organizer: 統計数理研究所 数学協働プログラム ワークショップ (社会創造数学研究センターとの共同開催)、大自由度分子系における化学反応機序の理解と制御
  • Place of Presentation: 北海道大学理学部3号館(北海道札幌市)
  • Year and Date: 2015-10-31
  • Invited
• [Presentation] Single Molecule Biophysics: How can One Dig the Underlying Network from Noisy and Short Time Series? (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: International Conference on “Challenges in Data Science: a Complex Systems Perspective
  • Place of Presentation: Torino, Italy
  • Year and Date: 2015-10-14
  • Int'l Joint Research / Invited
• [Presentation] Identifying Different Reaction Processes in terms of Graph Laplacian (2015)
  • Author(s): Hiroshi Teramoto, Alireza Hadjighasem, Daniel Karrasch, George Haller, Tamiki Komatsuzaki
  • Organizer: ランダム力学系理論とその応用
  • Place of Presentation: 京都大学数理解析研究所(京都府京都市)
  • Year and Date: 2015-09-30
  • Invited
• [Presentation] 1分子時系列データから解読するエネルギー地形とネットワーク (2015)
  • Author(s): 小松崎 民樹
  • Organizer: データ駆動科学の新展開」ミニ研究会
  • Place of Presentation: 北海道大学 百年記念会館(北海道札幌市)
  • Year and Date: 2015-09-24
  • Invited
• [Presentation] 非平衡効果が引き起こすF1分子モーターの非アレニウス型温度依存性 (2015)
  • Author(s): 田宮 裕治, Chun-Biu Li, 渡邉 力也, 野地 博行, 小松崎 民樹
  • Organizer: 第9回分子科学討論会
  • Place of Presentation: 東京工業大学大岡山キャンパス(東京都目黒区)
  • Year and Date: 2015-09-16
• [Presentation] 複雑分子系の異性化反応ネットワークに埋め込まれた時間階層構造の解読 (2015)
  • Author(s): 永幡 裕, 前田 理, 寺本 央, Chun-Biu Li, 堀山 貴史, 武次 徹也, 小松崎 民樹
  • Organizer: 第9回分子科学討論会
  • Place of Presentation: 東京工業大学 大岡山キャンパス(東京都目黒区)
  • Year and Date: 2015-09-16
• [Presentation] 特異点論を用いた非断熱交差の安定性と分岐の解析 (2015)
  • Author(s): 寺本 央, 戸田 幹人, 小松崎 民樹
  • Organizer: 第70回日本物理学会
  • Place of Presentation: 関西大学千里山キャンパス(大阪府吹田市)
  • Year and Date: 2015-09-16
• [Presentation] 複合化学反応系の分子シミュレーション-第一原理シミュレーションから分子技術へ- (2015)
  • Author(s): 永幡 裕, 前田 理, 寺本 央, Chun-Biu Li, 武次 徹也, 小松崎 民樹
  • Organizer: 化学反応経路探索のニューフロンティア
  • Place of Presentation: 大井町駅前品川区立総合区民会館きゅりあん(東京都大井町)
  • Year and Date: 2015-09-15
• [Presentation] 複雑反応ネットワークに埋め込まれた時間階層構造の解読 (2015)
  • Author(s): Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
  • Organizer: 第53回日本生物物理学会
  • Place of Presentation: 金沢大学角間キャンパス自然科学本館(石川県金沢市)
  • Year and Date: 2015-09-13
• [Presentation] 植物の中の局所微小管と細胞成長の関係について (2015)
  • Author(s): Satoru Tsugawa, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: 第53回日本生物物理学会
  • Place of Presentation: 金沢大学角間キャンパス自然科学本館(石川県金沢市)
  • Year and Date: 2015-09-13
• [Presentation] 非平衡効果が引き起こすF1分子モーターの非アレニウス型温度依存性 (2015)
  • Author(s): Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
  • Organizer: 第53回日本生物物理学会
  • Place of Presentation: 金沢大学角間キャンパス自然科学本館(石川県金沢市)
  • Year and Date: 2015-09-13
• [Presentation] Single Molecule Time Series Analysis of F1-ATPase to Unravel the Role of Bound-ATP Hydrolysis (2015)
  • Author(s): Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: 第53回日本生物物理学会
  • Place of Presentation: 金沢大学角間キャンパス自然科学本館(石川県金沢市)
  • Year and Date: 2015-09-13
• [Presentation] Classification and control of electron energy level crossings (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: 北大理論化学ワークショッ プ
  • Place of Presentation: 北海道大学理学部7号館(北海道札幌市)
  • Year and Date: 2015-09-11
• [Presentation] The Key and Unlock Mechanisms in F1-ATPase Unveiled by Single Molecule Time Series Analysis (2015)
  • Author(s): Chun-Biu Li
  • Organizer: The 4th Workshop on Molecular & Chemical Kinetics
  • Place of Presentation: Berlin, Germany
  • Year and Date: 2015-09-07
  • Int'l Joint Research / Invited
• [Presentation] Transition States from Gas Phase, Condensed Phase to Complex Networks (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Telluride summer workshop “Geometry of Chemical Reaction Dynamics”
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-07-27
  • Int'l Joint Research / Invited
• [Presentation] A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kohno, Tamiki Komatsuzaki
  • Organizer: Telluride summer workshop “Geometry of Chemical Reaction Dynamics”
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-07-27
  • Int'l Joint Research / Invited
• [Presentation] 複雑な異性化反応ネットワークに埋め込まれた時間階層構造の解読法の開発 (2015)
  • Author(s): 永幡 裕, 前田 理, 寺本 央, Chun-Biu Li, 堀山 貴史, 武次 徹也, 小松崎 民樹
  • Organizer: 日本化学会北海道支部 2015年 夏季研究発表会
  • Place of Presentation: 北海道教育大学函館校(北海道函館市)
  • Year and Date: 2015-07-18
• [Presentation] Sumi-Marcus 型ポテンシャルモデルを用いた F1分子モーターの反応速度定数の解析 (2015)
  • Author(s): 田宮 裕治, Chun-Biu Li, 渡邉 力也, 野地 博行, 小松崎 民樹
  • Organizer: 日本化学会北海道支部 2015年 夏季研究発表会
  • Place of Presentation: 北海道教育大学函館校(北海道函館市)
  • Year and Date: 2015-07-18
• [Presentation] 一細胞計測で見えてきたバクテリア細胞内ATP濃度の多様性 (2015)
  • Author(s): 柳沼 秀幸, 河合 信之輔, 田端 和仁, 冨山 佳祐, 垣塚 彰, 小松崎 民樹, 岡田 康志, 野地 博行, 今村 博臣
  • Organizer: 第67回日本細胞生物学会大会
  • Place of Presentation: タワーホール船堀(東京都江東区)
  • Year and Date: 2015-06-30
• [Presentation] グラフラプラシアンによる異なる反応プロセスの同定 (2015)
  • Author(s): 寺本 央, Alireza Hadjighasem, Daniel Karrasch, George Haller, 小松崎 民樹
  • Organizer: RIMS 研究集会『力学系とその諸分野への応用』
  • Place of Presentation: 京都大学数理解析研究所(京都府京都市)
  • Year and Date: 2015-06-29
• [Presentation] How can we define a transition state over a network? (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: R. Stephen Berry Tribune Symposium
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-06-23
  • Int'l Joint Research / Invited
• [Presentation] A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Chemistry & Dynamics in Complex Environments
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-06-23
  • Int'l Joint Research / Invited
• [Presentation] Energy Landscapes learned from Single-Molecule Time-Series: Dimensionality and Disconnectivity Graph (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: The Complexity of Dynamics Kinetics from Single Molecules to Cells
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-06-14
  • Int'l Joint Research / Invited
• [Presentation] The Roles of ATP Hydrolysis Revealed by Single Molecule Time Series Analysis of Rotary Fluctuations in F1-ATPase (2015)
  • Author(s): Chun-Biu Li
  • Organizer: The Complexity of Dynamics Kinetics from Single Molecules to Cells
  • Place of Presentation: Telluride, CO., USA
  • Year and Date: 2015-06-14
  • Int'l Joint Research / Invited
• [Presentation] マルコフ連鎖の時間階層的クラスタリング (2015)
  • Author(s): 永幡 裕, 前田 理, 寺本 央, Chun-Biu Li, 武次 徹也, 小松崎 民樹
  • Organizer: ERATO湊離散構造処理系プロジェクト 「2015年度 初夏のワークショップ」
  • Place of Presentation: 北海道大学情報科学研究科 ERATO 会議室(北海道札幌市)
  • Year and Date: 2015-06-11
• [Presentation] A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kono, Tamiki Komatsuzaki
  • Organizer: 31st Symposium on Chemical Kinetics and Dynamics
  • Place of Presentation: Frontier Research in Applied Sciences Building, Hokkaido University, Sapporo Hokkaido
  • Year and Date: 2015-06-03
  • Int'l Joint Research
• [Presentation] Deciphering timescale hierarchy encoded in complex reaction networks (2015)
  • Author(s): Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
  • Organizer: 31st Symposium on Chemical Kinetics and Dynamics
  • Place of Presentation: Frontier Research in Applied Sciences Building, Hokkaido University, Sapporo Hokkaido
  • Year and Date: 2015-06-03
  • Int'l Joint Research
• [Presentation] Dynamical Switching of Reactive and Nonreactive Modes at High Energies (2015)
  • Author(s): Tamiki Komatsuzaki, Mikito Toda, Hiroshi Teramoto
  • Organizer: 2015 SIAM Conference on Dynamical Systems
  • Place of Presentation: Snowbird, Utah, USA
  • Year and Date: 2015-05-17
  • Int'l Joint Research / Invited
• [Presentation] Identifying different reaction processes in terms of graph laplacian (2015)
  • Author(s): Hiroshi Teramoto, Tamiki Komatsuzaki
  • Organizer: IlLuminyating 2015
  • Place of Presentation: Madrid, Spain
  • Year and Date: 2015-05-07
  • Int'l Joint Research / Invited
• [Presentation] Energy landscapes derived from single molecule spectroscopy and complex networks (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Architecture, dynamics, and functionality of molecular biosystems
  • Place of Presentation: The Institute for Molecular Science（愛知県岡崎市）
  • Year and Date: 2015-03-31
  • Invited
• [Presentation] Understandings of Chemical Reaction Dynamics in terms of Dynamical System Theory (2015)
  • Author(s): Hiroshi Teramoto, Mikito Toda and Tamiki Komatsuzaki
  • Organizer: Computational Chemistry (CC) Symposium in ICCMSE
  • Place of Presentation: Athens, Greece
  • Year and Date: 2015-03-20
  • Invited
• [Presentation] Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis (2015)
  • Author(s): B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, and C. F. Landes
  • Organizer: 2015 Oil & Gas High Performance Computing Workshop
  • Place of Presentation: Houston, USA
  • Year and Date: 2015-03-05
• [Presentation] Hierarchical structure of no-return transition states (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Spectroscopy and Dynamics of Molecules and Clusters 2015
  • Place of Presentation: Nainital, India
  • Year and Date: 2015-02-21
  • Invited
• [Presentation] Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis (2015)
  • Author(s): Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
  • Organizer: The 2015 Quantitative BioImaging Conference
  • Place of Presentation: Paris, France
  • Year and Date: 2015-01-07
• [Presentation] Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series (2015)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: The 8th biennial workshop on Single Molecule Biophysics (SMB)
  • Place of Presentation: Aspen, USA
  • Year and Date: 2015-01-04
• [Presentation] An extraction method of local microtubule alignments in Arabidopsis sepal (2014)
  • Author(s): Satoru Tsugawa, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: The 15th Ries-Hokudai International Symposium 響[hibiki]
  • Place of Presentation: CHATERAISE Gateaux Kingdom SAPPORO（北海道札幌市）
  • Year and Date: 2014-12-16
• [Presentation] Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series (2014)
  • Author(s): J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, and Tamiki Komatsuzaki
  • Organizer: The 15th Ries-Hokudai International Symposium 響[hibiki]
  • Place of Presentation: CHATERAISE Gateaux Kingdom SAPPORO（北海道札幌市）
  • Year and Date: 2014-12-16
• [Presentation] Temperature Dependence of Molecular Motor (2014)
  • Author(s): Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
  • Organizer: The 15th Ries-Hokudai International Symposium 響[hibiki]
  • Place of Presentation: CHATERAISE Gateaux Kingdom SAPPORO（北海道札幌市）
  • Year and Date: 2014-12-16
• [Presentation] An extraction of embedded timescale hierarchies buried in complex reaction network (2014)
  • Author(s): Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
  • Organizer: The 15th Ries-Hokudai International Symposium 響[hibiki]
  • Place of Presentation: CHATERAISE Gateaux Kingdom SAPPORO（北海道札幌市）
  • Year and Date: 2014-12-16
• [Presentation] Local-heterogeneous responses and transient dynamics in colloidal fluids (2014)
  • Author(s): Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Joseph Z. Terdik, Norbert F. Scherer, and Tamiki Komatsuzaki
  • Organizer: The 15th Ries-Hokudai International Symposium 響[hibiki]
  • Place of Presentation: CHATERAISE Gateaux Kingdom SAPPORO（北海道札幌市）
  • Year and Date: 2014-12-16
• [Presentation] A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: XIXth International Workshop on Quantum Systems in Chemistry, Physics and Biology
  • Place of Presentation: New Taipei City, Taiwan
  • Year and Date: 2014-11-16
  • Invited
• [Presentation] Toward extraction of global coordination despite local variability in plant development (2014)
  • Author(s): Satoru Tsugawa, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: New Challenges in Complex Systems Science
  • Place of Presentation: Nishiwaseda Campus, Waseda University（東京都新宿区）
  • Year and Date: 2014-10-25
• [Presentation] Data Driven Approach to Dynamics of Protein Motor (2014)
  • Author(s): Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
  • Organizer: New Challenges in Complex Systems Science
  • Place of Presentation: Nishiwaseda Campus, Waseda University（東京都新宿区）
  • Year and Date: 2014-10-25
• [Presentation] Challenges in Understanding Complex Systems at the Single Molecule Level (2014)
  • Author(s): Chun-Biu Li and Tamiki Komatsuzaki
  • Organizer: New Challenges in Complex Systems Science
  • Place of Presentation: Nishiwaseda Campus, Waseda University（東京都新宿区）
  • Year and Date: 2014-10-25
  • Invited
• [Presentation] Chemical Reaction Dynamics and Chaos (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: New Challenges in Complex Systems Science
  • Place of Presentation: Nishiwaseda Campus, Waseda University（東京都新宿区）
  • Year and Date: 2014-10-24
  • Invited
• [Presentation] 複雑分子系の構造異性化反応ネットワークに埋め込まれた時間階層構造の抽出 (2014)
  • Author(s): 永幡 裕
  • Organizer: 研究会「理論と実験」２０１４
  • Place of Presentation: 広島大学理学部（広島県東広島市）
  • Year and Date: 2014-10-10
• [Presentation] 熱揺らぎに埋もれた力学的な反応経路 (2014)
  • Author(s): 小松崎 民樹
  • Organizer: 研究会「理論と実験」２０１４
  • Place of Presentation: 広島大学理学部（広島県東広島市）
  • Year and Date: 2014-10-09
  • Invited
• [Presentation] A Dynamical Switching of Reactive Mode ⇔ Nonreactive Mode at High Energies for a Hydrogen Atom in Crossed Electric and Magnetic Fields (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: 11th Asian International Seminar on Atomic and Molecular Physics
  • Place of Presentation: Katahira Campus, Tohoku University（宮城県仙台市）
  • Year and Date: 2014-10-08
  • Invited
• [Presentation] 分子個性と少数性 (2014)
  • Author(s): 小松崎 民樹
  • Organizer: 第52回日本生物物理学会年会
  • Place of Presentation: 札幌コンベンションセンター（北海道札幌市）
  • Year and Date: 2014-09-26
• [Presentation] Dynamical heterogeneity and dynamics of cage breaking and formation in colloidal fluids (2014)
  • Author(s): Nag Preetom, Teramoto Hiroshi, Li Chun-Biu, Komatsuzaki Tamiki
  • Organizer: 第52回日本生物物理学会年会
  • Place of Presentation: 札幌コンベンションセンター（北海道札幌市）
  • Year and Date: 2014-09-25
• [Presentation] 複雑分子系の異性化反応ネットワークに埋め込まれた時間階層構造の抽出 (2014)
  • Author(s): 永幡 裕、前田 理、寺本 央、Chun-Biu Li、堀山 貴史、武次 徹也、小松崎 民樹
  • Organizer: 第8回分子科学討論会
  • Place of Presentation: 広島大学東広島キャンパス（広島県東広島市）
  • Year and Date: 2014-09-21
• [Presentation] Extracting coherent molecular vibrational modes by nonlinear time series analysis (2014)
  • Author(s): Hiroshi Teramoto, Mikito Toda and Tamiki Komatsuzaki
  • Organizer: Workshop on Theory and Applications of Random/Non-autonomous Dynamical Systems
  • Place of Presentation: London, UK
  • Year and Date: 2014-09-11
  • Invited
• [Presentation] 少数性の生物学において顕在化する分子個性 (2014)
  • Author(s): 小松崎 民樹
  • Organizer: 日本物理学会2014年秋季大会
  • Place of Presentation: 中部大学春日井キャンパス（愛知県春日井市）
  • Year and Date: 2014-09-09
  • Invited
• [Presentation] 正準変換摂動理論の有効領域の拡張法とそれによる振動子間の非線系共鳴によるエネルギー移動の解明 (2014)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 日本物理学会2014年秋季大会
  • Place of Presentation: 中部大学春日井キャンパス（愛知県春日井市）
  • Year and Date: 2014-09-09
• [Presentation] Energy landscapes learned from time series and networks (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Energy Landscapes : From Single Molecules to Soft Matter
  • Place of Presentation: Durham, UK
  • Year and Date: 2014-08-20
  • Invited
• [Presentation] 複雑分子系における構造異性化反応ネットワークの理解に向けて (2014)
  • Author(s): 永幡 裕
  • Organizer: 第54回 分子科学若手の会 夏の学校
  • Place of Presentation: いこいの村能登半島（石川県羽咋郡志賀町）
  • Year and Date: 2014-08-18
• [Presentation] 数学の力で読み解く一分子時系列～F1分子モーターを題材として～ (2014)
  • Author(s): 田宮 裕治、Chun-Biu Li、渡邉力也、野地博行、小松崎民樹
  • Organizer: 第54回 生物物理若手の会 夏の学校
  • Place of Presentation: ホテルたつき（愛知県蒲郡市）
  • Year and Date: 2014-08-09
• [Presentation] Reaction Coordinate Switching Mechanism, on the Possibility of Its Experimental Verification and Its Quantum Manifestation (2014)
  • Author(s): Hiroshi Teramoto, Mikito Toda and Tamiki Komatsuzaki
  • Organizer: The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications
  • Place of Presentation: Madrid, Spain
  • Year and Date: 2014-07-08
  • Invited
• [Presentation] Chance and Necessity in Reactions Under Chaos and Stochastic Fluctuation (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications
  • Place of Presentation: Madrid, Spain
  • Year and Date: 2014-07-07
  • Invited
• [Presentation] Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series (2014)
  • Author(s): J. Nick Taylor, Chun-Biu Li, and Tamiki Komatsuzaki
  • Organizer: Macromolecular dynamics: structure, function and diseases
  • Place of Presentation: Beijing, China
  • Year and Date: 2014-07-03
• [Presentation] Extracting Cooperative modes between a biological molecule and water molecules (2014)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: International Workshop "Over the Barriers of Transition Paths: Dynamical Processes in Proteins and Complex Molecular Systems"
  • Place of Presentation: Tokyo Institute of Technology（神奈川県横浜市）
  • Year and Date: 2014-06-28
  • Invited
• [Presentation] Energy Landscapes Constructed From Single-molecule Time Series And Reaction Networks (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Macromolecular dynamics: structure, function and diseases
  • Place of Presentation: Beijing, China
  • Year and Date: 2014-06-27
  • Invited
• [Presentation] Theories Should Meet Experiments: What Can We Extract From Time Series Data? (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Beijing Computational Science Research Center (CSRC) Seminar
  • Place of Presentation: Beijing, China
  • Year and Date: 2014-06-23
  • Invited
• [Presentation] Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series (2014)
  • Author(s): J. Nick Taylor, Chun-Biu Li, and Tamiki Komatsuzaki
  • Organizer: ICBP 8th IUPAP international conference on biological physics
  • Place of Presentation: Beijing, China
  • Year and Date: 2014-06-21
• [Presentation] リー正準変換摂動理論のnon blow-up 領域と有効領域の解析 (2014)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: RIMS 研究集会 力学系：理論と応用の相互作用
  • Place of Presentation: 京都大学数理解析研究所（京都府京都市）
  • Year and Date: 2014-06-11
  • Invited
• [Presentation] 複雑分子系における構造異性化反応ネットワークの理解に向けて (2014)
  • Author(s): 永幡 裕、前田 理、寺本 央、Chun-Biu Li、堀山 貴史、武次 徹也、小松崎 民樹
  • Organizer: 第17回理論化学討論会
  • Place of Presentation: 名古屋大学（東山キャンパス）ES総合館（愛知県名古屋市）
  • Year and Date: 2014-05-23
• [Presentation] 生体分子と水の過渡的な集団運動の抽出 (2014)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 第17回理論化学討論会
  • Place of Presentation: 名古屋大学（東山キャンパス）ES総合館（愛知県名古屋市）
  • Year and Date: 2014-05-22
• [Presentation] Energy Landscapes Constructed From Single-Molecule Time Series and Reaction Networks (2014)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: The 2014 Les Houches - TSRC Protein Dynamics Workshop
  • Place of Presentation: Les Houches, France
  • Year and Date: 2014-05-21
  • Invited
• [Presentation] ノイジーなFRETデータから多重経路を考慮に入れた自由エネルギー地形を抽出する (2014)
  • Author(s): 小松崎 民樹
  • Organizer: 理研シンポジウム：細胞システムの動態と論理Ⅵ
  • Place of Presentation: 理化学研究所和光本所（埼玉県和光市）
  • Year and Date: 2014-04-04
• [Presentation] タンパク質の時系列から得られたMarkov連鎖の解析に向けて：グラフの分割とクラスタリングで定義する複雑な化学反応における状態とその時間階層構造 (2014)
  • Author(s): 永幡 裕, 寺本 央, Chun-Biu Li, 小松崎 民樹
  • Organizer: 理研シンポジウム：細胞システムの動態と論理Ⅵ
  • Place of Presentation: 理化学研究所和光本所（埼玉県和光市）
  • Year and Date: 2014-04-04
• [Presentation] 軌道レベルのスペクトルによる軌道の複雑さの特徴付け (2014)
  • Author(s): 寺本央
  • Organizer: 2013年度冬の力学系研究集会
  • Place of Presentation: 広島大学東千田キャンパス３０２講義室(広島市)
• [Presentation] Transportation barriers in dynamical systems (2014)
  • Author(s): Hiroshi Teramoto
  • Organizer: Workshop on Lagrangian Coherent Structures and Dynamical Systems
  • Place of Presentation: 北海道大学理学部3号館(札幌市)
• [Presentation] Extracting cage breaking motion and dynamical heterogeneity in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs) (2014)
  • Author(s): Preetom Nag
  • Organizer: Workshop on Lagrangian Coherent Structures and Dynamical Systems
  • Place of Presentation: 北海道大学理学部3号館(札幌市)
• [Presentation] タンパク質の時系列から得られたMarkov連鎖の解析に向けて：グラフの分割とクラスタリングで定義する複雑な化学反応における状態とその時間階層構造 (2014)
  • Author(s): 永幡 裕, 堀山 貴史, 前田 理, 寺本 央, Chun-Biu Li, 小松崎 民樹
  • Organizer: 2013 年度日本生物物理学会北海道支部例会
  • Place of Presentation: 北海道大学 シオノギ創薬イノベーションセンター(札幌市)
• [Presentation] パターン形成における本質的な高次相関情報量の抽出 (2014)
  • Author(s): 宮川尚紀，寺本央，河合信之輔，李振風，小松崎民樹
  • Organizer: 日本物理学会 第69回年次大会
  • Place of Presentation: 東海大学湘南キャンパス(平塚市)
• [Presentation] タンパク質一分子計測から得られたマルコフ連鎖がもつ時間階層構造の理解に向けて (2014)
  • Author(s): 永幡裕，寺本央，Chun-Biu Li，小松崎民樹
  • Organizer: 日本物理学会 第69回年次大会
  • Place of Presentation: 東海大学湘南キャンパス(平塚市)
• [Presentation] 生体分子と水の過渡的な協同運動の抽出 (2014)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 日本物理学会 第69回年次大会
  • Place of Presentation: 東海大学湘南キャンパス(平塚市)
• [Presentation] Detecting and analyzing methods of normally hyperbolic invariant manifolds (2013)
  • Author(s): Hiroshi Teramoto
  • Organizer: Illuminating 2013: Dynamical Perspectives on Molecular Processes
  • Place of Presentation: Loughborough University(Loughborough, UK)
  • Invited
• [Presentation] A microscopic ruler tells us the underlying networks in single molecule measurements (2013)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Nanoscale Science Seminars 2013:A Microscopic ruler tells us the underlying networks in single molecule measurements
  • Place of Presentation: Max Planck Institute(Stuttgart, Germany)
  • Invited
• [Presentation] データ駆動型モデリングと一分子動態解析における虚実 (2013)
  • Author(s): 小松崎 民樹
  • Organizer: 日本顕微鏡学会第69回学術講演会
  • Place of Presentation: ホテル阪急エキスポパーク(吹田市)
  • Invited
• [Presentation] Unbiased estimation of physical properties in noisy experimental data (2013)
  • Author(s): Shinnosuke Kawai, David Cooper, Christy Landes, Henning D. Mootz, Haw Yang, Tamiki Komatsuzaki
  • Organizer: IMS Workshop on "Hierarchical Molecular Dynamics: From Ultrafast Spectroscopy to Single Molecule Measurements"
  • Place of Presentation: NINS Okazaki Conference Center(Okazaki, Japan)
• [Presentation] Data-driven Approach to Unveil Single Molecule Kinetics from Dwell-Time Time Series (2013)
  • Author(s): Chun-Biu Li
  • Organizer: IMS Workshop on "Hierarchical Molecular Dynamics: From Ultrafast Spectroscopy to Single Molecule Measurements"
  • Place of Presentation: NINS Okazaki Conference Center(Okazaki, Japan)
• [Presentation] Detecting and analyzing methods of normally hyperbolic invariant manifolds (2013)
  • Author(s): Hiroshi Teramoto
  • Organizer: XXXIII Dynamics Days Europe-Madrid 2013
  • Place of Presentation: Madrid, Spain
  • Invited
• [Presentation] Breakdown of Normally Hyperbolic Invariant Manifolds, its Consequences and Quantum Manifestation (2013)
  • Author(s): Hiroshi Teramoto
  • Organizer: Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Reactivity Boundaries to Separate the Fate of a Chemical Reaction Associated with Multiple Saddles (2013)
  • Author(s): Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
  • Organizer: Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Phase Space Geometrical Aspects in Condensed Phase Reactions (2013)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Revisiting Energy Landscape & Extracting it from FRET measurement (2013)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: The Complexity of Dynamics and Kinetics in Many Dimensions
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Does Dynamic Disorder Exist in the Enzymatic Reactions on the Single Molecule Level? (2013)
  • Author(s): Chun-Biu Li
  • Organizer: The Complexity of Dynamics and Kinetics in Many Dimensions
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Identifying states in Markov chain steady state network extracted from time series by finding minimum transition probability (2013)
  • Author(s): Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: The Complexity of Dynamics and Kinetics in Many Dimensions
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Coherent Dynamics in Colloidal Fluids in terms of Lagrangian Coherent Structure (2013)
  • Author(s): Hiroshi Teramoto
  • Organizer: The Complexity of Dynamics and Kinetics in Many Dimensions
  • Place of Presentation: Telluride, CO.(USA)
• [Presentation] Revisiting Energy Landscape, Timescale, Coarse-Graining (2013)
  • Author(s): Tamiki Komatsuzaki
  • Organizer: Chemistry and Dynamics in Complex Environments
  • Place of Presentation: Telluride, CO.(USA)
  • Invited
• [Presentation] 2つの反応方向を持つサドルにおける化学反応：行先・起源を分ける反応性境界の抽出 (2013)
  • Author(s): 永幡 裕, 寺本 央, Chun-Biu Li, 河合 信之輔, 小松崎 民樹
  • Organizer: 日本化学会北海道支部2013年夏季研究発表会
  • Place of Presentation: 北見工業大学(北見市)
• [Presentation] 実験データからノイズを取り除き背後の物理量を評価する方法 (2013)
  • Author(s): 河合信之輔・David Cooper・Christy Landes・Henning D. Mootz・Haw Yang・小松崎 民樹
  • Organizer: 日本化学会北海道支部2013年夏季研究発表会
  • Place of Presentation: 北見工業大学(北見市)
• [Presentation] Toward System Molecular Biology & Data Science (2013)
  • Author(s): 小松崎 民樹
  • Organizer: A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
  • Place of Presentation: 定山渓ビューホテル(札幌市)
• [Presentation] Spectral Analysis of Dynamics from a given Time Series (2013)
  • Author(s): 寺本 央、Gerge Haller、戸田 幹人、小松崎 民樹
  • Organizer: A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
  • Place of Presentation: 定山渓ビューホテル(札幌市)
• [Presentation] Co-operative motion in colloidal fluids in terms of Lagrangian Coherent Structures(LCS) (2013)
  • Author(s): Nag Preetom,寺本 央, Li Chun-Biu, 小松崎 民樹
  • Organizer: A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
  • Place of Presentation: 定山渓ビューホテル(札幌市)
• [Presentation] Information of multi-order correlation in pattern formation (2013)
  • Author(s): 宮川 尚紀,寺本 央, Li Chun-Biu, 小松崎 民樹
  • Organizer: A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
  • Place of Presentation: 定山渓ビューホテル(札幌市)
• [Presentation] Identifying the most distinct disjoint sets to extract hierarchical structure in Markov chain steady state network extracted from time series by finding “minimum” transition probability (2013)
  • Author(s): 永幡 裕, 寺本 央, 堀山 貴史, Chun-Biu Li, 小松崎 民樹
  • Organizer: A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
  • Place of Presentation: 定山渓ビューホテル(札幌市)
• [Presentation] When Computational Mechanics Meets Single Molecule Time Series (2013)
  • Author(s): Chun-Biu Li
  • Organizer: 2013 International Symposium on Nonlinear Theory and its Applications
  • Place of Presentation: Santa Fe Community Convention Center(Santa Fe, USA)
  • Invited
• [Presentation] The Hidden Markov Modeling with Exact Information Content of Dwell-Time Time Series (2013)
  • Author(s): Chun-Biu Li
  • Organizer: Complexity Sciences Center
  • Place of Presentation: Physics Department, Univ. of California(Davis, USA)
  • Invited
• [Presentation] 反応の運命を分ける反応性境界： 定義の一般化とH5+プロトン移動反応における反応性境界の抽出 (2013)
  • Author(s): 永幡 裕, 寺本 央, Chun-Biu Li, 河合 信之輔, 小松崎 民樹
  • Organizer: 第７回分子科学討論会2013京都
  • Place of Presentation: 京都テルサ(京都市)
• [Presentation] 時間スケールに依存して変化する実効自由度とエネルギー地形 (2013)
  • Author(s): 河合 信之輔，寺本 央，小松崎 民樹
  • Organizer: 第７回分子科学討論会2013京都
  • Place of Presentation: 京都テルサ(京都市)
• [Presentation] 反応座標切替機構の量子的兆候 (2013)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 第７回分子科学討論会2013京都
  • Place of Presentation: 京都テルサ(京都市)
• [Presentation] 定常マルコフ連鎖から階層構造を抽出する際に生じる組み合わせ爆発 (2013)
  • Author(s): 永幡 裕, 寺本 央, 堀山 貴史, Chun-Biu Li, 小松崎 民樹
  • Organizer: 湊離散構造処理系プロジェクト ERATO セミナー
  • Place of Presentation: 北海道大学工学部(札幌市)
  • Invited
• [Presentation] 個々の軌道の振舞いとその集団分布の振舞いの関係～一軌道レベルでのスペクトル解析法とそれによる溶質分子と水の協同運動の抽出～ (2013)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 第36回溶液化学シンポジウム プレシンポジウム
  • Place of Presentation: 北海道大学学術交流会館(札幌市)
  • Invited
• [Presentation] 天文学から生まれたカオスと化学動力学の出会い (2013)
  • Author(s): 小松崎 民樹
  • Organizer: Symposium on Cross-Talk between Chemistry and Planetary Sciences
  • Place of Presentation: 北海道大学電子科学研究所１階会議室(札幌市)
• [Presentation] Dynamic Disorder 再考：解析の虚実 (2013)
  • Author(s): 小松崎 民樹
  • Organizer: 研究会「理論と実験」2013
  • Place of Presentation: 広島大学理学部(東広島市)
  • Invited
• [Presentation] Let Systems Tell for themselves: Energy Landscape and Complex Network (2013)
  • Author(s): James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
  • Organizer: Technologies for Medical Diagnosis and Therapy Symposium
  • Place of Presentation: Academia Sinica(Taipei, Taiwan)
• [Presentation] Toward the Decoding of Single Nucleotides Tunneling Current by Change Point Analysis (2013)
  • Author(s): Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: Technologies for Medical Diagnosis and Therapy Symposium
  • Place of Presentation: Academia Sinica(Taipei, Taiwan)
• [Presentation] Inferring Kinetics Objectively from Single Molecule Time Series with Full Information Content (2013)
  • Author(s): Chun-Biu Li
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
  • Invited
• [Presentation] A Multiscale Kinetic Scheme Extracted from EGFR-Grb2 Single Molecule Reaction (2013)
  • Author(s): Sultana Tahmina, Takagi Hiroaki, Morimatsu Miki, Teramoto Hiroshi, Li Chun-Biu, Sako Yasushi, Komatsuzaki Tamiki
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
• [Presentation] 一分子時系列から抽出されたマルコフ連鎖 定常ネットワーク における遷移確率が“最小”となる分子の“状態”の同定 (2013)
  • Author(s): 永幡 裕, 寺本 央, Li Chun-Biu, 小松崎 民樹
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
• [Presentation] 分子イメージングから要素間の高次相互作用の定量化に向けて (2013)
  • Author(s): 小松崎 民樹
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
  • Invited
• [Presentation] Coherent dynamics in colloidal fluids in terms of Lagrangian coherent structures (LCS) (2013)
  • Author(s): Nag Preetom, Teramoto Hiroshi, Li Chun-Biu, Komatsuzaki Tamiki
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
• [Presentation] Quantifying the absolute ATP concentration inside single bacteria cells (2013)
  • Author(s): Hideyuki Yaginuma, Shinnosuke Kawai, Keisuke Tomiyama, Kazuhito V. Tabata, Tamiki Komatsuzaki, Hiromi Imamura, Hiroyuki Noji
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市)
• [Presentation] An Information-Theoretical approach to Local Equilibrium State Analysis for Single-Molecule Time-Series (2013)
  • Author(s): J. Nick Taylor, Li Chun-Biu, Kawai Shinnosuke, Komatsuzaki Tamiki
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館(京都市
• [Presentation] 力学系をみる二つの視点：軌道と分布の描像、の関係 (2013)
  • Author(s): 寺本央、戸田幹人、小松崎民樹
  • Organizer: 関東力学系セミナー
  • Place of Presentation: 一橋大学(国立市)
  • Invited
• [Presentation] 分子個性（Dynamic disorder）：一分子生物学から産まれた新しい概念？ (2013)
  • Author(s): 小松崎 民樹
  • Organizer: 第2回バイオ単分子研究会
  • Place of Presentation: つなぎ温泉 紫苑(盛岡市)
  • Invited
• [Presentation] タンパク質一分子の計測から得られた定常マルコフ連鎖がもつ時間階層構造の理解に向けて (2013)
  • Author(s): 永幡 裕, 寺本 央, Li Chun-Biu, 小松崎 民樹
  • Organizer: ERATO湊離散構造処理系プロジェクト 「2013年度 秋のワークショップ」
  • Place of Presentation: 第一滝本館(登別市)
• [Presentation] Essential Coordinates to Describe the Dynamics of Many-atom Systems (2013)
  • Author(s): Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
  • Organizer: 5th JCS International Symposium on Theoretical Chemistry
  • Place of Presentation: Todai-ji Culture Center(Nara, Japan)
  • Invited
• [Presentation] Extracting the Protein-folding Dynamics from Single Molecule Time Series (2013)
  • Author(s): Kunihiko Ibe, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Information of multi-order correlation in pattern formation (2013)
  • Author(s): Naoki Miyagawa, Hiroshi Teramoto, Chun-Biu Li, and Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Coherent dynamics in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs) (2013)
  • Author(s): Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Toward understanding hierarchical structure of complex reaction networks extracted from single molecule time series (2013)
  • Author(s): Yutaka Nagahata, Hiroshi Teramoto, Takashi Horiyama, Chun-Biu Li, Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Scrutiny of Heterogeneity in Memory by Extracting Reaction Network Buried in Single Molecule Time Series of EGFR and Grb2 (2013)
  • Author(s): Tahmina Sultana, Hiroaki Takagi, Miki Morimatsu, Hiroshi Teramoto, Chun-Biu Li, Yasushi Sako, and Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series (2013)
  • Author(s): J. N. Taylor, C.B. Li, S. Kawai, and T. Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Relation between dynamics of individual trajectories and that of their ensemble distributions -Spectral Analysis of Individual Trajectories- (2013)
  • Author(s): Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
• [Presentation] Time Series, Networks and Dynamics: A Perspective from the Information Theory (2013)
  • Author(s): Chun-Biu Li
  • Organizer: The 14th RIES-HOKUDAI International Symposium 網[mou]
  • Place of Presentation: シャトレーゼガトーキングダムサッポロ(札幌市)
  • Invited
• [Book] パリティ１１月号「ラグランジュ協同構造―流体の流れに隠れた骨格」 (2013)
  • Author(s): Thomas Peacock, George Haller : 小松崎民樹 訳
  • Total Pages: 80
  • Publisher: 丸善出版株式会社
• [Book] Reaction Rate Constant Computations; Theories and Applicationｓ, CHAPTER7 "Dynamics of Chemical Reaction around a Saddle Point - What divides reacting and non-reacting trajectories?" (2013)
  • Author(s): Shinnosuke Kawai and Tamiki Komatsuzaki
  • Total Pages: 572
  • Publisher: RSC Publishing
• [Remarks] Single Molecule Chemo-mechanics ...
  • URL: http://www.oia.hokudai.ac.jp/blog/31871/
• [Remarks] 回転分子モーターF1-ATPase の化学-力学エネルギー変換におけるATP加水分解反応の役割解明!
  • URL: http://www.es.hokudai.ac.jp/result/2015-12-18-mlns/
• [Remarks] 化学反応の行き先を変換する“切り替えスイッチ”の存在を解明
  • URL: http://www.es.hokudai.ac.jp/result/2015-10-02-mlns/
• [Remarks] 北海道大学電子科学研究所分子生命数理研究分野HP
  • URL: http://mlns.es.hokudai.ac.jp/
• [Remarks] プレス発表 ノイズを含むデータから分子の状態とそれらのネットワーク。。。
  • URL: http://www.hokudai.ac.jp/pr/150318_es_pr.pdf
• [Remarks] ノイズを含むデータから分子の状態とそれらのネットワーク。。。
  • URL: http://www.es.hokudai.ac.jp/result/2015-03-18-mlns/
• [Remarks] Novel method developed to extract ...
  • URL: http://www.oia.hokudai.ac.jp/blog/2015/03/23/novel-method-developed-to-extract-molecular-states-and-their-network-from-noisy-single-molecule-time-series-data/
• [Remarks] 北海道大学電子科学研究所、分子生命数理研究分野ホームページ
  • URL: http://mlns.es.hokudai.ac.jp/
• [Funded Workshop] Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies) (2015)
  • Place of Presentation: Convention Center, Hawaii, USA
  • Year and Date: 2015-12-15
• [Funded Workshop] Telluride Workshop on Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases (2015)
  • Place of Presentation: Telluride, CO, USA
  • Year and Date: 2015-07-27
• [Funded Workshop] Telluride Workshop on The Complexity of Dynamics and Kinetics from Single Molecules to Cells (2015)
  • Place of Presentation: Telluride, CO, USA
  • Year and Date: 2015-06-14