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Elucidation of the recognition mechanisms in Clostridium cellulovorans

Research Project

Project/Area Number 25289293
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionKyoto University

Principal Investigator

Ueda Mitsuyoshi  京都大学, (連合)農学研究科(研究院), 教授 (90183201)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2015: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2014: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2013: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywordsバイオマス / 分子認識 / 基質認識 / 転写制御 / セルロソーム / プロテオーム / リサイクルバイオテクノロジー / アーミング技術
Outline of Final Research Achievements

An anaerobic bacterium Clostridium cellulovorans produces a large extracellular enzyme complex called cellulosome and a number of non-cellulosomal proteins. Each component plays an important role on efficient degradation of various biomass-substrates. We performed intracellular and extracellular time-course proteome analyses with xylan in which C. cellulovorans changed profile of proteins significantly. C. cellulovorans proteins were successfully identified, and these profiles changed dependent on each culture time. Comparison of the intracellular and extracellular protein profiles indicated that C. cellulovorans adapted each profile of proteins in response to residues of xylan. Furthermore, we clarified the production of some key proteins, which involve in substrate degradation and metabolism.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (24 results)

All 2015 2014 2013 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results,  Open Access: 2 results,  Acknowledgement Compliant: 4 results) Presentation (12 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Book (1 results)

  • [Journal Article] Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis2015

    • Author(s)
      S. Aburaya, K. Esaka, H. Morisaka, K. Kuroda, M. Ueda
    • Journal Title

      AMB Express

      Volume: 5 Issue: 1 Pages: 29-29

    • DOI

      10.1186/s13568-015-0115-6

    • NAID

      120005763864

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A dcsign for the control of apoptosis in genetically modified Saccharomyces cerevisiae2014

    • Author(s)
      Nao Nishida, Dongyu Jing, Kouichi Kuroda, Mitsuyoshi Ueda
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: (印刷中) Issue: 2 Pages: 358-362

    • DOI

      10.1080/09168451.2014.878224

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced adsorption and recovery of uranyl ions by NikR mutant-displaying yeast2014

    • Author(s)
      Kouichi Kuroda, Kazuki Ebisutani, Mitsuyoshi Ueda
    • Journal Title

      Biomolecules

      Volume: 4 Issue: 2 Pages: 390-401

    • DOI

      10.3390/biom4020390

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Activation of signaling pathways related to cell wall integrity and multidrug resistance by organic solvent in Saccharomyces cerevisiae2014

    • Author(s)
      Nao Nishida, Dongyu Jing, Kouichi Kuroda, Mitsuyoshi Ueda
    • Journal Title

      Current genetics

      Volume: 60 Issue: 3 Pages: 149-162

    • DOI

      10.1007/s00294-013-0419-5

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of chitosan-binding amino acid residues of chitosanase from Paenibacillus fukuinensis2014

    • Author(s)
      Danya Isogawa, Hironobu Morisaka, Kouichi Kuroda, Mitsuyoshi Ueda
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 78 Issue: 7 Pages: 1177-1182

    • DOI

      10.1080/09168451.2014.917263

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Single-cell heterogeneity in suppression of PC12 differentiation by direct microinjection of a differentiation inhibitor, U01262014

    • Author(s)
      Jihye Chung, Natsuko Miura, Kouichi Kuroda, Mitsuyoshi Ueda
    • Journal Title

      Cell Biology International

      Volume: 38 Issue: 10 Pages: 1215-1220

    • DOI

      10.1002/cbin.10296

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Display of Clostridium cellulovorans xylose isomerase on the cell surface of S, cerevisiae and its direct application to xylose fermentation2013

    • Author(s)
      M. Ota, H. Sakuragi, H. Morisaka, K. Kuroda, M. Ueda
    • Journal Title

      Biotechnology Progress

      Volume: 29 Issue: 2 Pages: 346-351

    • DOI

      10.1002/btpr.1700

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ABC transporters and cell wall proteins involved in organic solvent tolerance in Saccharomyces cergvisiae2013

    • Author(s)
      Nao Nishida, Naoki Ozato, Ken Matsui, Kouichi Kuroda, Mitsuvoshi Ueda.
    • Journal Title

      Journal of biotechnology

      Volume: 165 Issue: 2 Pages: 145-152

    • DOI

      10.1016/j.jbiotec.2013.03.003

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spatial reorganization of yeast enolase to alter carbon metabolism under hypoxia2013

    • Author(s)
      N. Miura, m. Shinohara, Y. Tatsukami, H. Morisaka, K. Kuroda, M. Ueda
    • Journal Title

      Eukaryotic Cell

      Volume: 12 Issue: 8 Pages: 1106-1119

    • DOI

      10.1128/ec.00093-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aquisition of thermotolerant yeast Saccharomyces cerevisiae by breeding via stepwise adaptation2013

    • Author(s)
      A. Satomura, Y. Katsuyama, N. Miuram K. Kuroda, M. Ueda
    • Journal Title

      Biotechnology Progress

      Volume: 29 Issue: 5 Pages: 1116-1123

    • DOI

      10.1002/btpr.1754

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exoproteome profiles of Clostridium cellulovorans on various carbon sources2013

    • Author(s)
      K. Mtsui, J. Bae, K. Esaka, H. Morisaka, K. Kuroda, M. Ueda
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 79 Issue: 21 Pages: 6576-6584

    • DOI

      10.1128/aem.02137-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Development of in vivo methylation system for gene-modification of cellulolytic bacterium, Clostridium cellulovorans2015

    • Author(s)
      Jungwon Shin, Akihito Ishitaka, Kouichi Kuroda, and Mitsuyoshi Ueda
    • Organizer
      Pacifichem2015
    • Place of Presentation
      USA, Hawaii
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Construction of “glucose formation platform” using cellulosome-producing bacterium Clostridium cellulovorans2015

    • Author(s)
      Takako INAMORI, Akihito ISHITAKA, Shunsuke ABURAYA, Hironobu MORISAKA, Kouichi KURODA, Mitsuyoshi UEDA
    • Organizer
      Pacifichem2015
    • Place of Presentation
      USA, Hawaii
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Intracellular and extracellular time-course proteome analyses of Clostridium cellulovorans grown on xylan2015

    • Author(s)
      Shunsuke ABURAYA, Jungwon SHIN, Kohei ESAKA, Hironobu MORISAKA, Kouichi KURODA Mitsuyoshi UEDA
    • Organizer
      Pacifichem2015
    • Place of Presentation
      USA, Hawaii
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シュガープラットホーム創製に向けたClostridium cellulovoransの分子育種2015

    • Author(s)
      稲森貴子, 石高彰人, 油屋駿介, 森坂裕信, 黒田浩一, 植田充美
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Clostridium cellulovoransが生産するセルロソームを構成する酵素群の同定2015

    • Author(s)
      石川岳,長屋千晶,江坂康平,田中礼士,柴田敏行,森坂裕信,黒田浩一,植田充美,田丸浩,三宅英雄
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Clostridium cellulovoransの基質に応じた代謝機構の解析2014

    • Author(s)
      油屋駿介,江坂康平,森坂裕信,黒田浩一,植田充美
    • Organizer
      第66回日本生物工学会大会,札幌コンベンションセンター
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Clostridium cellulovoransにおけるセルロソームとノンセルロソーム関連遺伝子の発現調節機構2014

    • Author(s)
      高嶋和也,石川卓,田中礼士,柴田敏行,黒田浩一,植田充美,田丸浩,三宅英雄
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] A novel platform to determine and reconstruct an optimal enzyme combination for degradation of various biomasses: quantitative proteomic analysis and yeast cell2014

    • Author(s)
      Jungu Bae, Kazuma Matsui, Hironobu Morisaka, Kouichi Kuroda, Mitsuyoshi Ueda
    • Organizer
      ASM
    • Place of Presentation
      Boston Convention & Exhibition Center
    • Year and Date
      2014-05-17 – 2014-05-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Cell surface engineering and its application

    • Author(s)
      M. Ueda
    • Organizer
      IGER International Symposium on Cell Surface Structures and Functions
    • Place of Presentation
      Nagoya
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Best natural combination of biomass-degrading proteins determined from super-proteome analysis of C. cellulovorans

    • Author(s)
      J. Bae, K. Matsui, H. Morisaka, K. Kuroda, M. Ueda
    • Organizer
      World Biotechnology Congress 2013
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ソフトバイオマス分解を目指したC. cellulovoransのエキソプロテオーム解析

    • Author(s)
      江坂康平、松井一真、森坂裕信、黒田幸一、植田充美
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] C. cellulovoransの基質認識の解析

    • Author(s)
      油屋駿介、江坂康平、森坂裕信、黒田浩一、植田充美
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学
    • Related Report
      2013 Annual Research Report
  • [Book] リサイクルバイオテクノロジーの最前線2013

    • Author(s)
      植田充美
    • Total Pages
      239
    • Publisher
      シーエムシー出版
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

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