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A useful approach for genetic diagnosis of infectious agents using next generation sequencing

Research Project

Project/Area Number 25293205
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Neurology
Research InstitutionKagoshima University

Principal Investigator

Hiroshi Takashima  鹿児島大学, 医歯学域医学系, 教授 (80372803)

Co-Investigator(Kenkyū-buntansha) MATSUURA EIJI  鹿児島大学, 医歯(薬)学総合研究科, 講師 (30598800)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2015: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Fiscal Year 2014: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2013: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords新規感染症 / 古細菌 / 感染症遺伝子診断 / 脳炎 / 次世代シークエンサー / 脳・神経 / 感染症 / 微生物 / DNAコンピュータ / 遺伝学
Outline of Final Research Achievements

Background During a 7-year period, we experienced four patients with slowly progressive encephalomyelitis in the same geographical area. Brain biopsy showed histological changes characteristic of non-viral encephalitis. We reported the clinical features of this encephalitis and the morphology of the microbe identified in brain biopsies with its molecular analysis.
Methods We extensively investigated four patients with unknown subacute/chronic dementia. Affected brain tissues were analyzed histopathologically, and DNA sequences of the responsible pathogen were detected using brain biopsy tissues.
Findings Histopathology of biopsied brain tissue revealed a microorganism was observed around the vessels in all patients. Ultrastructural analysis of this microorganism revealed the lack of a cell wall. Based on the morphology of the pathogen, we hypothesized that it belonged to Archaea. Next-generation sequencing (NGS) identified sequences were homologous to Halobacteriaceae.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (8 results)

All 2016 2015 2014 2013

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (4 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] 人類初の古細菌による感染症 ―認知症や運動障害を呈する新しい脳脊髄炎の発見―2016

    • Author(s)
      﨑山佑介、神田直昭、出雲周二、髙嶋 博
    • Journal Title

      Neuroinfection

      Volume: 21 Pages: 109-113

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] New type of encephalomyelitis responsive to trimethoprim/sulfamethoxazole treatment in Japan2015

    • Author(s)
      Yusuke Sakiyama, Naoaki Kanda, Yujiro Higuchi, Michiyoshi Yoshimura,Hiroyuki Wakaguri, Yoshiharu Takata, Osamu Watanabe, Junhui Yuan, Yuichi Tashiro, Ryuji Saigo, Satoshi Nozuma, Akiko Yoshimura, Shiho Arishima, Hiroshi Takashima,
    • Journal Title

      Neurol Neuroimmunol Neuroinflamm

      Volume: 2 Issue: 5 Pages: 1-9

    • DOI

      10.1212/nxi.0000000000000143

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] First Archaeal Infection in Human Brain: a new type of chronic encephalomyelitis2016

    • Author(s)
      Yusuke Sakiyama, Naoaki Kanda, Junhui Yuan, Michiyoshi Yoshimura, Hitoshi Arata, Shuji Izumo, and Hiroshi Takashima
    • Organizer
      第57回日本神経学会学術大会
    • Place of Presentation
      神戸コンベンションセンター(兵庫県神戸市)
    • Year and Date
      2016-05-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 人類初の古細菌による感染症 ―認知症や運動障害を呈する新しい脳脊髄炎の発見2015

    • Author(s)
      髙嶋 博、﨑山佑介、出雲周二
    • Organizer
      第20回日本神経感染症学会
    • Place of Presentation
      ホテルメルパルク長野(長野県長野市)
    • Year and Date
      2015-10-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] A useful approach for genetic diagnosis of infectious agents using next generation sequencing2013

    • Author(s)
      Y. Sakiyama, Y. Higuchi, H. Tanabe, J. Yuan, S. Nozuma, A. Yoshimura, A. Hashiguchi, Y. Okamoto, R. Hirano, E. Matsuura, R. Okubo, T. Iwasaki, F. Matsuda, S. Izumo, H. Takashima
    • Organizer
      The 63th Annual meeting of the American society of human genetics Annual meeting 2013
    • Place of Presentation
      Boston, U.S.A.
    • Related Report
      2013 Annual Research Report
  • [Presentation] ST合剤が奏功した新しい感染性脳炎の原因究明2013

    • Author(s)
      崎山佑介、神田直昭、樋口雄二郎、高田良治、渡邊修、袁軍輝、荒田仁、野妻智嗣、道園久美子、東桂子、橋口昭大、平野隆城、松浦英治、大窪隆一、樋口逸郎、岩崎琢也、出雲周二、髙嶋博
    • Organizer
      日本神経学会総会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] 抗菌剤を含む医薬組成物2015

    • Inventor(s)
      髙嶋 博、 出雲周二
    • Industrial Property Rights Holder
      髙嶋 博、 出雲周二
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-08-21
    • Related Report
      2015 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 抗菌剤を含む医薬組成物2014

    • Inventor(s)
      高嶋博、 出雲周二
    • Industrial Property Rights Holder
      国立大学法人鹿児島大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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