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Molecular mechanisms underlining the formation of endoplasmic reticulum (ER) bodies in plants

Research Project

Project/Area Number 25440146
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionKyoto University (2014-2015)
National Institute for Basic Biology (2013)

Principal Investigator

Kenji Yamada  京都大学, 理学(系)研究科(研究院), 研究員 (00360339)

Co-Investigator(Renkei-kenkyūsha) NISHIMURA MIKIO  基礎生物学研究所, 高次細胞機構研究部門, 教授 (80093061)
NISHIMURA IKUKO  京都大学, 理学研究科, 教授 (00241232)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords小胞体 / ERボディ / シロイヌナズナ / βグルコシダーゼ / 食害 / 傷害 / 膜タンパク質 / グルコシノレート / ダンゴムシ / ERボディ / 植物・微生物相互作用 / オルガネラ / 病虫害抵抗性 / ミロシナーゼ / 膜輸送体 / 金属イオン
Outline of Final Research Achievements

ER bodies are organelles derived from the endoplasmic reticulum in plants of the Brassicales order, including Arabidopsis thaliana. A unique protein NAI2 and a β-glucosidase PYK10 are accumulated in ER bodies in A. thaliana. In this study, we investigated the role of these proteins and obtained new information for the ER body formation and function. We found that NAI2 and PYK10 were necessary and sufficient for the ER body formation. PYK10 was a myrosinase to hydrolyze glucosinolates, and it prevented the feeding damage by woodlice. These findings suggest that ER bodies are responsible for the protection against pests and pathogens.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (15 results)

All 2016 2015 2014 2013

All Journal Article (11 results) (of which Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (4 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Hexose oxidase-mediated hydrogen peroxide as a mechanism for the antibacterial activity in the red seaweed Ptilophora subcostata.2015

    • Author(s)
      Ogasawara K, Yamada K, Hatsugai N, Imada C, Nishimura M
    • Journal Title

      PLoS ONE

      Volume: 56 Issue: 2 Pages: e0149084-e0149084

    • DOI

      10.1371/journal.pone.0149084

    • NAID

      120005763394

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of the light-dependent transition of plant peroxisomes.2015

    • Author(s)
      Goto-Yamada, S., Mano, S., Yamada, K., Oikawa, K., Hosokawa, Y., Hara-Nishimura, I., and Nishimura, M.
    • Journal Title

      Plant and Cell Physiology

      Volume: 56 Issue: 7 Pages: 1252-1263

    • DOI

      10.1093/pcp/pcv081

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Vacuolar processing enzyme in plant programmed cell death2015

    • Author(s)
      Noriyuki Hatsugai, Kenji Yamada, Shino Goto-Yamada and Ikuko Hara-Nishimura
    • Journal Title

      Front Plant Sci

      Volume: 6 Pages: 1-11

    • DOI

      10.3389/fpls.2015.00234

    • NAID

      120005670913

    • Description
      【掲載確定】
    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Physical interaction between peroxisomes and chloroplasts elucidated by in situ laser analysis2015

    • Author(s)
      Kazusato Oikawa, Shigeru Matsunaga, Shoji Mano, Maki Kondo, Kenji Yamada, Makoto Hayashi, Takatoshi Kagawa, Akeo Kadota, Wataru Sakamoto, Shoichi Higashi, Masakatsu Watanabe, Toshiaki Mitsui, Akinori Shigemasa, Takanori Iino, Yoichiroh Hosokawa & Mikio Nishimura
    • Journal Title

      Nature Plants

      Volume: 1 Issue: 4 Pages: 15035-15035

    • DOI

      10.1038/nplants.2015.35

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] ER bodies in plants of the Brassicales order: Biogenesis and association with innate immunity.2014

    • Author(s)
      Nakano, RT., K. Yamada, P. Bednarek, M. Nishimura and I. Hara-Nishimura
    • Journal Title

      Frontiers in Plant Science

      Volume: 5 Issue: 5 Pages: 1-17

    • DOI

      10.4161/auto.28529

    • NAID

      120005439544

    • Related Report
      2014 Research-status Report
  • [Journal Article] ER bodies in plants of the Brassicales order: Biogenesis and association with innate immunity.2014

    • Author(s)
      Nakano RT, Yamada K, Bednarek P, Nishimura M, Hara-Nishimura I
    • Journal Title

      Front. Plant Sci.

      Volume: 5 Pages: 73-73

    • DOI

      10.3389/fpls.2014.00073

    • NAID

      120005439544

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality.2014

    • Author(s)
      M. Shibata, K. Oikawa, K. Yoshimoto, S. Goto-Yamada, S. Mano, K. Yamada, M. Kondo, M. Hayashi, W. Sakamoto, Y. Ohsumi, M. Nishimura
    • Journal Title

      Autophagy

      Volume: 10

    • Related Report
      2013 Research-status Report
  • [Journal Article] Highly Oxidized Peroxisomes Are Selectively Degraded via Autophagy in Arabidopsis2013

    • Author(s)
      Shibata, M., Oikawa, K., Yoshimoto, K., Kondo., M., Mano, S., Yamada, K, Hayashi, M, Sakamoto, W., Ohsumi. Y., and Nishimura. M
    • Journal Title

      The Plant Cell

      Volume: 25 Issue: 12 Pages: 4967-4983

    • DOI

      10.1105/tpc.113.116947

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Novel proteins interacting with peroxisomal protein receptor PEX7 in Arabidopsis thaliana.2013

    • Author(s)
      Cui S, Mano S, Yamada K, Hayashi M, Nishimura M.
    • Journal Title

      Plant Signal Behav.

      Volume: 8 Issue: 10 Pages: e26829-e26829

    • DOI

      10.4161/psb.26829

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis reveals the Rab GTPase RabE1c is involved in the degradation of the peroxisomal protein receptor PEX7 (Peroxin 7)2013

    • Author(s)
      Soungkui Cui, Yoichiro Fukao, Shoji Mano, Kenji Yamada, Makoto Hayashi and Mikio Nishimura
    • Journal Title

      Journal of Biological Chemistry

      Volume: 288 Issue: 8 Pages: 6014-6023

    • DOI

      10.1074/jbc.m112.438143

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification of two novel endoplasmic reticulum body-specific integral membrane proteins.2013

    • Author(s)
      Yamada K et al.
    • Journal Title

      Plant Physiol.

      Volume: 161(1) Issue: 1 Pages: 108-120

    • DOI

      10.1104/pp.112.207654

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Endomembrane-mediated plant strategies against pathogens and herbivores.2016

    • Author(s)
      K. Yamada, I. Hara-Nishimura
    • Organizer
      Kyoto-Bristol-Heidelberg Plant Sciences Workshop 2016
    • Place of Presentation
      Kyoto University, Kyoto, Japan
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mechanism of ER body formation and function in Arabidopsis thaliana.2014

    • Author(s)
      Yamada K
    • Organizer
      The 5th NIBB-MPIZ-TLL Joint Symposium
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      2014-11-24 – 2014-11-26
    • Related Report
      2014 Research-status Report
  • [Presentation] シロイヌナズナのERボディの形成と機能について2014

    • Author(s)
      山田健志
    • Organizer
      第3回植物エンドメンブレンミーティング
    • Place of Presentation
      名古屋大学,愛知
    • Year and Date
      2014-09-29 – 2014-09-30
    • Related Report
      2014 Research-status Report
  • [Presentation] ERボディの膜特異的に局在するMEBタンパク質の解析2014

    • Author(s)
      山田健志,永野惇,西村いくこ,西村幹夫
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学,富山
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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