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Synthetic biological approach to construct and analyze a synthetic microbial ecosystem

Research Project

Project/Area Number 25730176
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionTokyo Institute of Technology

Principal Investigator

Ayukawa Shotaro  東京工業大学, 情報生命博士教育院, 特任助教 (70645845)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords人工遺伝子回路 / 微生物共生系 / 合成生物学
Outline of Final Research Achievements

Many microbes are living by forming symbiotic systems that have complex structures and functions by communicating with other microbes. In order to understand the design principle of these symbiotic systems, we constructed a synthetic mutualistic system that is easy to be controlled and analyzed with the synthetic biological approach. Firstly, we designed and constructed synthetic genetic circuits that make E.coli cells to form a mutualistic system in which two types of cells help the other’s survival by inducing expression of antibiotic resistance genes through cell-cell communication molecules. Furthermore, we confirmed that the synthetic mutualistic system can exist stably with culture experiments and numerical simulations.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (5 results)

All 2016 2015 2014

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (4 results)

  • [Journal Article] A Bacterial Continuous Culture System Based on a Microfluidic Droplet Open Reactor2016

    • Author(s)
      Manami Ito,Haruka Sugiura, Shotaro Ayukawa, Daisuke Kiga,Masahiro Takinoue
    • Journal Title

      Analytical Sciences

      Volume: 32 Issue: 1 Pages: 61-66

    • DOI

      10.2116/analsci.32.61

    • NAID

      130005118567

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 合成生物学的アプローチに基づく2細胞の相互遺伝子発現制御システムの構築2015

    • Author(s)
      木賀大介, 西田暁史, 鮎川翔太郎
    • Organizer
      日本農芸化学会2015年度年会
    • Place of Presentation
      岡山大学津島キャンパス
    • Year and Date
      2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 人工遺伝子回路を用いた微生物共生システムの構築2015

    • Author(s)
      鮎川翔太郎, 西田暁史, 木賀大介
    • Organizer
      日本農芸化学会2015年度年会
    • Place of Presentation
      岡山大学津島キャンパス
    • Year and Date
      2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 人工微生物共生システム構築のための合成生物学的アプローチ2014

    • Author(s)
      鮎川翔太郎, 西田暁史, 木賀大介
    • Organizer
      「細胞を創る」研究会7.0
    • Place of Presentation
      東京大学弥生キャンパス
    • Year and Date
      2014-11-13 – 2014-11-14
    • Related Report
      2014 Research-status Report
  • [Presentation] 共生系への合成生物学的アプローチ2014

    • Author(s)
      西田暁史, 鮎川翔太郎, 山村雅幸
    • Organizer
      環境微生物系学会合同大会
    • Place of Presentation
      アクトシティ浜松コングレスセンター
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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