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Infection memory: study on antiviral functions of endogenous viruses

Research Project

Project/Area Number 26253027
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionKyoto University

Principal Investigator

Tomonaga Keizo  京都大学, ウイルス・再生医科学研究所, 教授 (10301920)

Co-Investigator(Renkei-kenkyūsha) HONDA Tomoyuki  大阪大学, 大学院医学研究科, 准教授 (80402676)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥40,560,000 (Direct Cost: ¥31,200,000、Indirect Cost: ¥9,360,000)
Fiscal Year 2016: ¥11,700,000 (Direct Cost: ¥9,000,000、Indirect Cost: ¥2,700,000)
Fiscal Year 2015: ¥13,260,000 (Direct Cost: ¥10,200,000、Indirect Cost: ¥3,060,000)
Fiscal Year 2014: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Keywords内在性ウイルス / ボルナウイルス / ウイルス抵抗性 / 外適応 / 進化 / 内在性RNAウイルス / 共進化 / 感染防御 / ウイルス / ゲノム
Outline of Final Research Achievements

It is suggested that our life-form has a mechanism to memorize virus infections as endogenous element in the genomes and uses them as novel genes on evolution. This study was carried out to understand the functions, especially antiviral activity, of endogenous bornavirus-like elements (EBLs) in mammalian genomes, which we found in a previous report. In this study, we demonstrated the expression regulation of EBLs in human genomes, as well as function of a human EBL to regulate neighboring gene expression. Furthermore, we showed that EBLs from mouse and Thirteen-liked ground squirrel genomes express piwi-interacting RNA and protein, respectively, and could act as antiviral factors against bornavirus infection in cultured cells. Moreover, we revealed the possibility that EBLs endogenized in the genome of the Eptesicus genus bat genome encode a functional RNA dependent RNA polymerase derived from ancient bornavirus infection.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (31 results)

All 2016 2015 2014 Other

All Int'l Joint Research (2 results) Journal Article (11 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 11 results,  Acknowledgement Compliant: 7 results,  Open Access: 9 results) Presentation (16 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results) Remarks (2 results)

  • [Int'l Joint Research] University Medical Center Freiburg/Robert Koch Institute/University of Bonn Medical Centre(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Vanderbilt University Medical Center(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Endogenized viral sequences in mammals.2016

    • Author(s)
      Parrish NF, Tomonaga K
    • Journal Title

      Curr Opin Microbiol.

      Volume: 31 Pages: 176-183

    • DOI

      10.1016/j.mib.2016.03.002

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Sequence determination of a new parrot bornavirus-5 strain in Japan: implications of clade-specific sequence diversity in the regions interacting with host factors.2016

    • Author(s)
      Komorizono R, Makino A, Horie M, Honda T, Tomonaga K
    • Journal Title

      Microbiol Immunol.

      Volume: 60 Issue: 6 Pages: 437-441

    • DOI

      10.1111/1348-0421.12385

    • NAID

      40020866798

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] An RNA-dependent RNA polymerase gene in bat genomes derived from an ancient negative-strand RNA virus.2016

    • Author(s)
      Horie M, Kobayashi Y, Honda T, Fujino K, Akasaka T, Kohl C, Wibbelt G, Muhldorfer K, Kurth A, Muller MA, Corman VM, Gillich N, Suzuki Y, Schwemmle M, Tomonaga K.
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 25873-25873

    • DOI

      10.1038/srep25873

    • NAID

      120005822794

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Long-term expression of miRNA for RNA interference using a novel vector system based on a negative-strand RNA virus.2016

    • Author(s)
      Honda T, Yamamoto Y, Daito T, Matsumoto Y, Makino A, Tomonaga K.
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 26154-26154

    • DOI

      10.1038/srep26154

    • NAID

      120005770739

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Borna Disease Virus Assembles Porous Cage-like Viral Factories in the Nucleus.2016

    • Author(s)
      Hirai Y, Hirano Y, Matsuda A, Hiraoka Y, Honda T, Tomonaga K.
    • Journal Title

      The Journal of biological chemistry.

      Volume: 291 Issue: 50 Pages: 25789-25798

    • DOI

      10.1074/jbc.m116.746396

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals.2015

    • Author(s)
      Parrish NF, Fujino K, Shiromoto Y, Iwasaki YW, Ha H, Xing J, Makino A, Kuramochi-Miyagawa S, Nakano T, Siomi H, Honda T, Tomonaga K.
    • Journal Title

      RNA.

      Volume: 21 Issue: 10 Pages: 1691-703

    • DOI

      10.1261/rna.052092.115

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Transcription Profiling Demonstrates Epigenetic Control of Non-retroviral RNA Virus-Derived Elements in the Human Genome.2015

    • Author(s)
      Sofuku K, Parrish NF, Honda T, Tomonaga K.
    • Journal Title

      Cell Rep.

      Volume: 12 Issue: 10 Pages: 1548-54

    • DOI

      10.1016/j.celrep.2015.08.007

    • NAID

      120005829365

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Borna disease virus possesses an NF-kB inhibitory sequence in the nucleoprotein gene2015

    • Author(s)
      Makino A., Fujino K., Parrish NF., Honda T., Tomonaga K.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 8696-8696

    • DOI

      10.1038/srep08696

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome2014

    • Author(s)
      Fujino K, Horie M, Honda T, Merriman DK, Tomonaga K
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 111 Issue: 36 Pages: 13175-13180

    • DOI

      10.1073/pnas.1407046111

    • NAID

      120005477673

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Origin of endogenous bornavirus-like nucleoprotein elements in thirteen-lined ground squirrels2014

    • Author(s)
      Suzuki Y, Kobayashi Y, Horie M, Tomonaga K
    • Journal Title

      Genes Genet. Syst.

      Volume: 89 Pages: 143-148

    • NAID

      130004703733

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heat stress is a potent stimulus for enhancing rescue efficiency of recombinant Borna disease virus2014

    • Author(s)
      Kojima S, Honda T, Matsumoto Y, Tomonaga K
    • Journal Title

      Microbiology and Immunology

      Volume: 58 Issue: 11 Pages: 636-642

    • DOI

      10.1111/1348-0421.12193

    • NAID

      120005661577

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 哺乳動物ゲノムに内在化しているボルナウイルス由来因子の機能解析2016

    • Author(s)
      朝長啓造
    • Organizer
      第39回分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Transcription profile and prospective function of non-retroviral RNA virus-derived elements in mammalian genomes.2016

    • Author(s)
      Keizo Tomonaga
    • Organizer
      International Conference of the Genetics Society of Korea 2016
    • Place of Presentation
      Jeju Island, Korea
    • Year and Date
      2016-11-09
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ウイルス感染を抑制する内在性ボルナウイルス由来RNAエレメントの進化.2016

    • Author(s)
      小嶋将平, 本田知之, 朝長啓造.
    • Organizer
      第64回日本ウイルス学会学術集会.
    • Place of Presentation
      札幌
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] Host factors involved in Borna disease virus persistent infection in the nucleus.2016

    • Author(s)
      Tomonaga K.
    • Organizer
      Within host RNA virus persistence: mechanisms and consequences.
    • Place of Presentation
      St. Andrews, Scotland
    • Year and Date
      2016-08-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A lncRNA derived from an endogenous RNA virus element in human genome functions as a potent inhibitor of exogenous virus infection.2016

    • Author(s)
      Kojima S, Honda T and Tomonaga K.
    • Organizer
      RNA2016.
    • Place of Presentation
      Kyoto
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RNAウイルス配列の内在化により宿主が獲得したウイルス抵抗性の解明2015

    • Author(s)
      本田知之、朝長 啓造
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Co-evolution of bornaviruses and their hosts2015

    • Author(s)
      Tomonaga K
    • Organizer
      第63回日本ウイルス学会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Analysis of antiviral role and its mechanism of an endogenous bornavirus-like nucleoprotein in Borna disease virus infection2015

    • Author(s)
      Kojima S,Honda T,Tomonaga K
    • Organizer
      第63回日本ウイルス学会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] A putative RNA-dependent RNA polymerase gene derived from an ancientbornavirus in bats2015

    • Author(s)
      Horie M,Kobayashi Y,Honda T,Akasaka T,Fujino K,Kohl C,Gillich N,Mueller M,Corman VM,Wibbelt G,Kurth A,Ogawa H,Imai K,Suzuki Y,Schwemmle M,Tomonaga K
    • Organizer
      第63回日本ウイルス学会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] ヒト内在性ボルナウイルス様Nエレメント転写産物による周辺遺伝子発現制御機構2015

    • Author(s)
      惣福梢、本田智之、朝長啓造
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Involvement of DNA damage response in Borna disease virus infection,2015

    • Author(s)
      Sofuku K, Honda T, and Tomonaga K: , 14-19 June 2015.
    • Organizer
      Negative Strand Viruses 2015
    • Place of Presentation
      Siena Italy,
    • Year and Date
      2015-06-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 内在性ボルナウイルス様エレメントの非コードRNAとしての生理機能解明2014

    • Author(s)
      本田知之、小嶋将平、朝長啓造
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ボルナ病ウイルス粒子産生に対する宿主因子IGF2の関与2014

    • Author(s)
      牧野晶子、藤野寛、平井悠哉、惣福梢、本田知之、朝長啓造
    • Organizer
      第62回日本ウイルス学会学術集会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-10 – 2014-11-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒト内在性ボルナウイルス様Nエレメントのエピジェネティック制御機構2014

    • Author(s)
      惣福梢、本田知之、小嶋将平、朝長啓造
    • Organizer
      第62回日本ウイルス学会学術集会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-10 – 2014-11-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] ムチン型糖転移酵素Galnt3ノックアウトマウスを用いたA型インフルエンザウイルス感染動態の解析2014

    • Author(s)
      中村祥子、堀江真行、大道寺智、本田知之、中屋隆明、小守壽文、朝長啓造
    • Organizer
      第62回日本ウイルス学会学術集会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-10 – 2014-11-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] Bornavirus infection: a unique life style of an animal RNA virus in the DNA habitat2014

    • Author(s)
      Keizo Tomonaga
    • Organizer
      DNA habitats and its RNA inhabitants
    • Place of Presentation
      Salzburg
    • Year and Date
      2014-07-03 – 2014-07-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Remarks] 京都大学ウイルス・再生医科学研究所 RNAウイルス分野HP

    • URL

      https://t.rnavirus.virus.kyoto-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学ウイルス研究所 朝長研究室HP

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/tomonaga-hp/index.html

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report

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Published: 2014-04-04   Modified: 2022-01-28  

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