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Development of the micro-flow ultra-rapid pulse label NMR apparatus and elucidation of the prion self-replication process.

Research Project

Project/Area Number 26291011
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionGifu University

Principal Investigator

Kuwata Kazuo  岐阜大学, 大学院連合創薬医療情報研究科, 教授 (00170142)

Co-Investigator(Kenkyū-buntansha) 鎌足 雄司  岐阜大学, 学内共同利用施設等, 助教 (70342772)
Co-Investigator(Renkei-kenkyūsha) FUKUOKA Mayuko  岐阜大学, 大学院連合創薬医療情報研究科, 特任助教 (60790988)
Research Collaborator HONDA Ryo  
Ferdausi Ali  
Kabir Aurangazeb  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
Fiscal Year 2016: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
KeywordsNMR / 混合器 / パルスラベル / プリオン / 自己複製 / マイクロ流路
Outline of Final Research Achievements

To perform the rapid mixing in the NMR magnet and to observe the folding or aggregation reaction of a protein in the atomic resolution, we devised an apparatus for the mixing of two solutions. Denatured protein solution goes through a first tubing and refolding buffer second tubing, and both tubing are connected to a carefully designed mixer in a NMR tube in the magnet. Waste solution is removed from the third tubing thereby enabling the observation in a continuous flow in the NMR tube. We reformed the apparatus used for in cell NMR using the glass material with homogeneous magnetic susceptibility with the aqueous solution. Thus we could remove the false peaks originated from the inhomogeneous magnetic susceptibility that was observed in the previous version of the apparatus. Also we found the ‘A-state’ which corresponds to the branching point between the cellular form and the aggregate, and that the cellular form itself inhibits the aggregate formation uncompetitively.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (44 results)

All 2017 2016 2015 2014 2013

All Journal Article (13 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 13 results,  Open Access: 10 results,  Acknowledgement Compliant: 7 results) Presentation (31 results) (of which Int'l Joint Research: 13 results,  Invited: 9 results)

  • [Journal Article] Evaluation of compound selectivity of aldo-keto reductases using differential scanning fluorimetry2017

    • Author(s)
      Kabir Aurangazeb, Satoshi Endo, Naoki Toyooka, Mayuko Fukuoka, Kazuo Kuwata, and Yuji O. Kamatari
    • Journal Title

      Journal of Biochemistry

      Volume: 161 (2) Pages: 215-222

    • DOI

      10.1093/jb/mvw063

    • NAID

      40021133504

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Instability of C154Y variant of aldo-keto reductase 10.1038/s41598-017-00710-x1C32017

    • Author(s)
      Satoshi Endo, Sayaka Takada, Ryo P. Honda, Kathrin Muller, Jochen H. Weishaupt, Peter M. Andersen, Albert C. Ludolph, Yuji O. Kamatari, Toshiyuki Matsunaga, Kazuo Kuwata, Ossama El-Kabbani, Akira Ikari
    • Journal Title

      Chemico-Biological Interactions

      Volume: S0009-2797(16) Pages: 194-202

    • DOI

      10.1016/j.cbi.2016.12.018

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The native state of prion protein (PrP) directly inhibits formation of PrP-amyloid fibrils in vitro.2017

    • Author(s)
      Ryo P. Honda and Kazuo Kuwata
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 562-562

    • DOI

      10.1038/s41598-017-00710-x

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A Novel Potent and Highly Specific Inhibitor against Influenza Viral N1-N9 Neuraminidases: Insight into Neuraminidase-inhibitor Interactions2016

    • Author(s)
      Nongluk Sriwilaijaroen, Sadagopan Magesh, Akihiro Imamura, Hiromune Ando, Hideharu Ishida, Miho Sakai, Erika Ishitsubo, Takanori Hori, Setsuko Moriya, Takeshi Ishikawa, Kazuo Kuwata, Takato Odagiri, Masato Tashiro, Hiroaki Hiramatsu, Kenji Tsukamoto, Taeko Miyagi, Hiroaki Tokiwa, Makoto Kiso, and Yasuo Suzuki
    • Journal Title

      J.Med.Chem.

      Volume: 59 Issue: 10 Pages: 4563-4577

    • DOI

      10.1021/acs.jmedchem.5b01863

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Logical design of an anti-cancer agent targeting the Plant Homeodomain (PHD) in Pygopus22016

    • Author(s)
      Ferdausi Ali, Keiichi Yamaguchi, Mayuko Fukuoka, Abdelazim Elsayed Elhelaly, and Kazuo Kuwata
    • Journal Title

      Cancer Science

      Volume: 107(9) Issue: 9 Pages: 1321-8

    • DOI

      10.1111/cas.12995

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Effects of ligand binding on the stability of aldo-keto reductases (AKR)2016

    • Author(s)
      Kabir Aurangazeb, Ryo P. Honda, Yuji O. Kamatari, Satoshi Endo, Mayuko Fukuoka, and Kazuo Kuwata
    • Journal Title

      Protein Science

      Volume: 25(12) Issue: 12 Pages: 2132-41

    • DOI

      10.1002/pro.3036

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Synthesis of double-fluorescent labeled prion protein for FRET analysis.2015

    • Author(s)
      Hosokawa-Muto J, Yamaguchi K, Kamatari YO, Kuwata K.
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 79 Issue: 11 Pages: 1802-1809

    • DOI

      10.1080/09168451.2015.1050991

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A native-like intermediate serves as a branching point between the folding and aggregation pathways of the mouse prion protein2015

    • Author(s)
      Honda RP, Xu M, Yamaguchi KI, Roder H, Kuwata K
    • Journal Title

      Structure.

      Volume: 23(9) Issue: 9 Pages: 1735-1742

    • DOI

      10.1016/j.str.2015.07.001

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Logical design of anti-prion agents using NAGARA2015

    • Author(s)
      Ma B, Yamaguchi K, Fukuoka M, Kuwata K
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 469(4): Issue: 4 Pages: 930-935

    • DOI

      10.1016/j.bbrc.2015.12.106

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 研究と臨床をつなぐ―プリオン病治療薬開発における基礎から前臨床まで―2015

    • Author(s)
      桑田一夫
    • Journal Title

      医薬品医療機器レギュラトリーサイエンス

      Volume: Vol.46 No.7 Pages: 428-432

    • NAID

      40020534984

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 神経変性疾患と‘かたち’の制御2015

    • Author(s)
      桑田一夫
    • Journal Title

      Clinical Neuroscience月刊 臨床神経科学 言語の起源と脳の進化 Vol.33 8 962-963

      Volume: Vol.33 8 Pages: 962-963

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acid-induced Molten Globule State of a Prion Protein: Crucial Role of Strand 1-Helix 1-Strand 2 Segment.2014

    • Author(s)
      Honda RP, Kei-ichi Yamaguchi, Kuwata K.
    • Journal Title

      The Journal of biological chemistry.

      Volume: 289(44) Issue: 44 Pages: 30355-30363

    • DOI

      10.1074/jbc.m114.559450

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging2013

    • Author(s)
      Masayoshi Nakasako, Yuki Takayama, Tomotaka Oroguchi, et al.
    • Journal Title

      Review of Scientific Instruments

      Volume: 84 Issue: 9 Pages: 93705-93705

    • DOI

      10.1063/1.4822123

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] Real-Time In vitro Conversion of Prion Protein Detected by NMR(ポスター)2016

    • Author(s)
      Keiichi Yamaguchi, Yuji O Kamatari, Ryo P Honda, Kazuo Kuwata
    • Organizer
      XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Kyoto International Conference Center
    • Year and Date
      2016-08-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Instability of C154Y variant of aldo-keto reductase 1C3 found in familial amyotrophic lateral sclerosis. (ポスター)2016

    • Author(s)
      Satoshi Endo, Sayaka Takada, Ryo Honda, Kathrin Muller, Yuji O. Kamatari, Toshiyuki Matsunaga, Kazuo Kuwata, Jochen Weishaupt, Akira Ikari
    • Organizer
      18th International Workshop on the Enzymology and Molecular Biology of Carbonyl Metabolism
    • Place of Presentation
      Costa Brava, Spain
    • Year and Date
      2016-07-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Continuous ultrasonic irradiation induces rapid aggregations of MoPrP depending on pH2016

    • Author(s)
      Kei-ichi Yamaguchi, Ryo Honda, Abdelazim Elsayed Elhelaly, Kazuo Kuwata
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Logical design of a therapeutic agent for prion diseases2016

    • Author(s)
      Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Folding and misfolding pathways of prion protein2016

    • Author(s)
      Ryo P. Honda, Kei-ichi Yamaguchi, Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A local conformation of natively disordered yeast prion monomer determines interspecies prion transmissibility2016

    • Author(s)
      Toshinobu shida, Yuji O. Kamatari, Kazuo Kuwata, Motomasa Tanaka
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Calibaration of ultrasonic power and conformational analysis of MoPrP amyloid fibrils(ポスター)2016

    • Author(s)
      Kei-ichi Yamaguchi, Junji Hosokawa-Muto, Yuji O. Kamatari, Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Discovery of anti-prion agents using PyMOL plugin-based logical drug design platform NAGARA(ポスター)2016

    • Author(s)
      Baio Ma, Kei-ichi Yamaguchi, Mayuko Fukuoka, Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Classification of anti-prion compounds based on the binding properties to prion proteins(ポスター)2016

    • Author(s)
      Yuji O. Kamatari, Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Latent structural variation in a yeast prion monomer determines strain phenotypes(ポスター)2016

    • Author(s)
      Motomasa Tanaka, Yumiko Ohhashi, Yoshiki Yamaguchi, Yuji O. Kamatari, Kazuo Kuwata
    • Organizer
      PRION 2016 Tokyo
    • Place of Presentation
      一ツ橋ホール 東京
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] プリオン病治療薬の開発2016

    • Author(s)
      桑田一夫
    • Organizer
      第5回岐阜構造生物学・医学・論理的創薬研究シンポジウム
    • Place of Presentation
      岐阜薬科大学、岐阜
    • Year and Date
      2016-03-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 統合創薬ソフトNAGARAの開発、論理的創薬機医学の創始、及び論理的 医療の実践2016

    • Author(s)
      桑田一夫
    • Organizer
      インシリコ創薬の展望セミナー
    • Place of Presentation
      臨床研究情報センター 神戸
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] プリオン病治療薬の開発2016

    • Author(s)
      桑田一夫
    • Organizer
      日本アミロイド―シス研究会学術集会
    • Place of Presentation
      KKRホテル東京
    • Related Report
      2016 Annual Research Report
  • [Presentation] Toward a first in human trial of a medical chaperone for prion diseases(オーラル)2015

    • Author(s)
      Kazuo Kuwata
    • Organizer
      Therapeutic approaches to prion disease and other neurodegenerative conditions associated with protein misfolding
    • Place of Presentation
      Cold Spring Harbor Laboratory, USA
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Continuous ultrasonication induces the rapid formation of mPrP aggregates(ポスター)2015

    • Author(s)
      Kei-ichi Yamaguchi, Ryo P. Honda, Abdelazim Elsayed Elhelaly, Kazuo Kuwata
    • Organizer
      APPS2015
    • Place of Presentation
      石川音楽堂、石川県
    • Year and Date
      2015-09-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ’A-state’ of PrP a branching point between the folding and misfolding pathways(ポスター)2015

    • Author(s)
      Ryo P. Honda, Kazuo Kuwata
    • Organizer
      APPS2015
    • Place of Presentation
      石川音楽堂、石川県
    • Year and Date
      2015-09-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Strategy for elucidating abnormal structure od prion proteins using the double-fluorescent labeling method and FRET analysis(ポスター)2015

    • Author(s)
      Yuji O.Kamatari, Junji Hosokawa-Muto, Kei-ichi Yamaguchi, Kazuo Kuwata
    • Organizer
      APPS2015
    • Place of Presentation
      石川音楽堂、石川県
    • Year and Date
      2015-09-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural Characterization of Two Distinct Yeast Prion Protein Interaction(オーラル)2015

    • Author(s)
      Toshinobu Shida, Yuji Kamatari, Yoshiki Yamagushi, Kazuo Kuwata, Motomasa Tanaka
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール、徳島県
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Molten globule state and misfolding of a prion protein(オーラル)2015

    • Author(s)
      Kei-ichi Yamaguchi, Ryo P. Honda, Kazuo Kuwata
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール、徳島県
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Elucidation of the pathogenic conversion mechanism of a prion protein, diagnosis and treatment(オーラル)2015

    • Author(s)
      Kazuo Kuwata
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール、徳島県
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Toward the First in Human Clinical Trial of Medical Chaperone for Prion Diseases(オーラル)2015

    • Author(s)
      桑田一夫
    • Organizer
      第56回日本神経学会学術大会
    • Place of Presentation
      朱鷺メッセ、ホテル日航新潟、新潟県
    • Year and Date
      2015-05-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] プリオン蛋白質のミスフォールディング過程におけるモルテングロビュール状態2015

    • Author(s)
      桑田一夫、本田諒
    • Organizer
      第四回岐阜構造生物学・医学・論理的創薬研究会シンポジウム
    • Place of Presentation
      岐阜薬科大学
    • Year and Date
      2015-03-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] プリオン病治験体制の整備2015

    • Author(s)
      桑田一夫
    • Organizer
      革新的医療研究開発で挑む神経変性疾患―プリオン病治験体制の確立に向けて―
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2015-02-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] XFEL低温コヒーレントX線回折イメージングによるアミロイド繊維凝集体の構造研究2015

    • Author(s)
      真崎悠、小林周、関口優希、苙口友隆、中迫雅由、山口圭一、桑田一夫、亀田啓、福井直也、河田康志、高山裕貴、山本雅貴
    • Organizer
      第28回日本放射光学会年会・放射光化学合同シンポジウム
    • Place of Presentation
      立命館大学
    • Year and Date
      2015-01-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] カルボニル還元酵素(CBR1)阻害活性を有する8-Hydroxy-2-imino-2H-chromene-3-carboxamide誘導体の創製2014

    • Author(s)
      小栗 弘成、遠藤 智史、宮城 菜未希、胡 大イ、荒井 裕貴、松永 俊之、五十里 彰、桑田 一夫、原 明、合田 浩明、豊岡 尚樹
    • Organizer
      第32回メディシナルシンポジウム
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] キネティックNMRによるタンパク質の‘かたち’の進化の観測2014

    • Author(s)
      桑田一夫、山口圭一
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪大学コンベンションセンター
    • Year and Date
      2014-11-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] プリオン病に対するメディカルシャペロンの医師主導治験に向けて2014

    • Author(s)
      桑田一夫
    • Organizer
      講演会
    • Place of Presentation
      国立精神・神経医療研究センター
    • Year and Date
      2014-09-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] CXDIによるアミロイド線維の一分子構造解析2014

    • Author(s)
      桑田一夫、山口圭一
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Sup35天然変性領域のアミロイド構造多形形成機構の解明2014

    • Author(s)
      鎌足雄司、桑田一夫
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] プリオン蛋白質のモンテグロビュール状態の発見とオリゴマー形成との関連2014

    • Author(s)
      本田諒、山口圭一、桑田一夫
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 論理的創薬からGMP製造へ2014

    • Author(s)
      桑田一夫
    • Organizer
      日本薬学会東海支部 特別講演会
    • Place of Presentation
      岐阜薬科大学
    • Year and Date
      2014-04-16
    • Related Report
      2014 Annual Research Report
    • Invited

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Published: 2014-04-04   Modified: 2018-03-22  

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