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Comprehensive analysis of archaeal transcriptional regulators in a hyperthermophile

Research Project

Project/Area Number 26292038
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionKyoto University

Principal Investigator

Kanai Tamotsu  京都大学, 工学研究科, 講師 (10346083)

Co-Investigator(Renkei-kenkyūsha) ATOMI Haruyuki  京都大学, 大学院工学研究科, 教授 (90243047)
Research Collaborator YOSHIDA Ko  
KANESEKI Tsuyoshi  
TANIMOTO Mitsuru  
ASLAM Mehwish  
GUNJI Ryoma  
YAMADA Masahiro  
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2017: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2016: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2015: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Keywordsアーキア / 転写制御因子 / 超好熱菌 / 転写 / 微生物 / 芳香族アミノ酸
Outline of Final Research Achievements

We have identified a transcriptional repressors for gluconeogenic enzymes and intracellular polysaccharide synthase in the hyperthermophilic archaeon, Thermococcus kodakarensis. A transcriptional activator, Tar, may control the entire aromatic amino acid biosynthesis systems in this organism. A collaborative research with Ehime University conducted a three dimensional structural analysis of Tar. It was suggested that the novel Lrp/AsnC family transcriptional repressor is involved in the control of a asparaginase gene, with a possibility of a dynamic binding/dissociation mechanism with DNA. By genetic recombination of the transcriptional regulatory system of T. kodakarensis, strains which produce hydrogen with higher efficiency were developed.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (13 results)

All 2017 2016 2015 2014

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (7 results) (of which Invited: 2 results)

  • [Journal Article] Gene regulation of two ferredoxin:NADP+ oxidoreductases by the redox-responsive regulator SurR in Thermococcus kodakarensis.2017

    • Author(s)
      Hidese R, Yamashita K, Kawazuma K, Kanai T, Atomi H, Imanaka T, Fujiwara S.
    • Journal Title

      Extremophiles

      Volume: 21 Issue: 5 Pages: 903-917

    • DOI

      10.1007/s00792-017-0952-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Engineering of a hyperthermophilic archaeon, Thermococcus kodakarensis, that displays chitin-dependent hydrogen production2017

    • Author(s)
      Aslam M, Horiuchi A, Simons JR, Jha S, Yamada M, Odani T, Fujimoto R, Yamamoto Y, Gunji R, Imanaka T, Kanai T, Atomi H.
    • Journal Title

      Appl Environ Microbiol.

      Volume: 83 Issue: 15

    • DOI

      10.1128/aem.00280-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic analyses of the functions of [NiFe]-hydrogenase maturation endopeptidases in the hyperthermophilic archaeon Thermococcus kodakarensis2017

    • Author(s)
      Tamotsu Kanai, Ayako Yasukochi, Jan Robert Simons, Joseph Walker Scott, Wakao Fukuda, Tadayuki Imanaka and Haruyuki Atomi
    • Journal Title

      Extremophiles

      Volume: 21 Issue: 1 Pages: 27-39

    • DOI

      10.1007/s00792-016-0875-1

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Overproduction of the membrane-bound [NiFe]-hydrogenase in Thermococcus kodakarensis and its effect on hydrogen production.2015

    • Author(s)
      Kanai T, Simons JR, Tsukamoto R, Nakajima A, Omori Y, Matsuoka R, Beppu H, Imanaka T, Atomi H.
    • Journal Title

      Front. Microbiol.

      Volume: 26 Pages: 847-847

    • DOI

      10.3389/fmicb.2015.00847

    • NAID

      120005848243

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The X-ray crystal structure of the euryarchaeal RNA polymerase in an open clamp configuration2014

    • Author(s)
      Sung-Hoon Jun, Akira Hirata*, Tamotsu Kanai, Thomas J. Santangelo, Tadayuki Imanaka and Katsuhiko S. Murakami*
    • Journal Title

      Nature Communications

      Volume: 5 Issue: 1 Pages: 5132-5132

    • DOI

      10.1038/ncomms6132

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Different roles of two transcription factor B proteins in the hyperthermophilic archaeon Thermococcus kodakarensis2014

    • Author(s)
      Hidese, R., Nishikawa, R., Gao, L., Katano, M., Imai, T. Kato, S., Kanai, T., Atomi, H., Imanaka, T., Fujiwara, S.
    • Journal Title

      Extremophiles (Springer Co.Ltd., New York)

      Volume: 18 Issue: 3 Pages: 573-588

    • DOI

      10.1007/s00792-014-0638-9

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] 超好熱性アーキアThermococcus kodakarensisにおける 新規Lrp/AsnC型転写制御因子の機能解明2017

    • Author(s)
      谷本 充、吉田 晃、山本 康之、金井 保、跡見 晴幸
    • Organizer
      極限環境生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 芳香族アミノ酸の生合成遺伝子群の発現を制御するアーキア転写活性化因子(Tar)の分子認識機構の解明2017

    • Author(s)
      臼井 孝典、金井 保、跡見 晴幸、堀 弘幸1、平田 章
    • Organizer
      極限環境生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] アーキアRNAポリメラーゼの転写活性化型開始複合体の構造解析に向けての準備状況2017

    • Author(s)
      小西 智也、金井 保、跡見 晴幸、堀 弘幸、平田 章
    • Organizer
      極限環境生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] アーキアにおけるアミノ酸生合成関連遺伝子の発現制御機構2016

    • Author(s)
      跡見晴幸、金関剛史、山本康之、今中忠行、金井保
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 超好熱性アーキアにおける新規転写制御因子の同定2014

    • Author(s)
      跡見晴幸、山本康之、吉田晃、金関剛史、今中忠行、金井保
    • Organizer
      第37回分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 超好熱性アーキアThermococcus kodakarensisにおける 芳香族アミノ酸生合成経路の転写制御機構の解明2014

    • Author(s)
      金関 剛史, 山本 康之, 今中忠行, 金井 保, 跡見 晴幸
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Genome-wide screening to identify novel transcriptional regulators from a hyperthermophilic archaeon, Thermococcus kodakarensis2014

    • Author(s)
      Tamotsu Kanai, Yasuyuki Yamamoto, Tsuyoshi Kaneseki, Tadayuki Imanaka and Haruyuki Atomi
    • Organizer
      10th International Congress on Extremophiles
    • Place of Presentation
      St. Petersburg, Russia
    • Year and Date
      2014-09-08
    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2019-12-27  

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