• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Formation mechanism and physiological significance of proteasome speckle

Research Project

Project/Area Number 26293018
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biological pharmacy
Research InstitutionTokyo Metropolitan Institute of Medical Science

Principal Investigator

SAEKI Yasushi  公益財団法人東京都医学総合研究所, 生体分子先端研究分野, 副参事研究員 (80462779)

Research Collaborator YASUDA Sayaka  公益財団法人東京都医学総合研究所, 生体分子先端研究分野, 研究員 (80624353)
KAIHO Ai  公益財団法人東京都医学総合研究所, 生体分子先端研究分野, 研究補助員
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,900,000 (Direct Cost: ¥13,000,000、Indirect Cost: ¥3,900,000)
Fiscal Year 2017: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2016: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2015: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2014: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Keywordsプロテアソーム / ユビキチン / タンパク質分解 / リボソーム / タンパク質品質管理 / 細胞 / 生体分子 / 核内構造体 / ストレス応答 / 遺伝子 / 蛋白質 / 酵素 / プロテオーム / 転写 / クロマチン構造
Outline of Final Research Achievements

The proteasome is the primary proteolytic machinery in cells and thus is a central regulator of the proteostasis network, but protein quality control (PQC) in the nucleus is largely unknown. Using EGFP knock-in cell lines of the proteasome subunit, we find that hyperosmotic stress induces rapid formation of nuclear foci of proteasomes within a few seconds. The foci are reversible structure that contains K48-linked ubiquitylated proteins, p97, and multiple proteasome-interacting proteins. The foci formation is dependent on ubiquitylation and their clearance requires active proteasomes, p97, and RAD23B, suggesting that this structure is a novel nuclear proteolytic center for adapting to nuclear stress. We identified ribosomal proteins as major ubiquitylated substrates that degraded in the foci, suggesting that the assembly process of the ribosome is vulnerable to hyperosmotic stress. Collectively, we identified the p97-RAD23B axis and the proteasome as a nuclear PQC pathway.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (29 results)

All 2018 2017 2016 2015 2014 Other

All Journal Article (11 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Open Access: 5 results,  Acknowledgement Compliant: 3 results) Presentation (6 results) (of which Invited: 6 results) Book (4 results) Remarks (8 results)

  • [Journal Article] K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains.2018

    • Author(s)
      Ohtake, F., Tsuchiya, H., Saeki, Y., and Tanaka, K
    • Journal Title

      PNAS

      Volume: 115 Issue: 7 Pages: 1401-1408

    • DOI

      10.1073/pnas.1716673115

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ub-ProT reveals global length and composition of protein ubiquitylation in cells2018

    • Author(s)
      Tsuchiya, H., Burana, D., Ohtake, F., Arai, N., Kaiho, A., Komada, M., Tanaka,K., and Saeki, Y.
    • Journal Title

      Nature Commun

      Volume: 9 Issue: 1 Pages: 524-524

    • DOI

      10.1038/s41467-018-02869-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In vivo ubiquitin linkage-type analysis reveals that the Cdc48-Rad23/Dsk2 axis contributes to K48-linked chain specificity of the proteasome.2017

    • Author(s)
      Tsuchiya, H., Ohtake, F., Arai, N., Kaiho, A., Yasuda, S., Tanaka, K., and Saeki, Y.
    • Journal Title

      Mol. Cell

      Volume: 66 Issue: 4 Pages: 488-502

    • DOI

      10.1016/j.molcel.2017.04.024

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ubiquitination of stalled ribosome triggers ribosome-associated quality control2017

    • Author(s)
      Matsuo Y, Ikeuchi K, Saeki Y, Iwasaki S, Schmidt C, Udagawa T, Sato F, Tsuchiya H, Becker T, Tanaka K, Ingolia NT, Beckmann R, Inada T
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 159-159

    • DOI

      10.1038/s41467-017-00188-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis for specific cleavage of Lys6-linked polyubiquitin chains by USP302017

    • Author(s)
      Sato Yusuke、Okatsu Kei、Saeki Yasushi、Yamano Koji、Matsuda Noriyuki、Kaiho Ai、Yamagata Atsushi、Goto-Ito Sakurako、Ishikawa Minoru、Hashimoto Yuichi、Tanaka Keiji、Fukai Shuya
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 24 Issue: 11 Pages: 911-919

    • DOI

      10.1038/nsmb.3469

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure of the Dnmt1 reader module complexed with a unique two-mono-ubiquitin mark on histone H3 reveals the basis for DNA methylation maintenance.2017

    • Author(s)
      Ishiyama S, Nishiyama A, Saeki Y, Moritsugu K Morimoto D, Yamaguchi L, Arai N, Matsumura R, Kawakami T, Mishima Y, Hojo H, Shimamura S, Ishikawa F, Tajima S, Tanaka K, Ariyoshi M, Shirakawa M, Ikeguchi M, Kidera A, Suetake I, Arita K, Nakanishi M
    • Journal Title

      Mol Cell

      Volume: 68 Issue: 2 Pages: 350-360

    • DOI

      10.1016/j.molcel.2017.09.037

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ubiquitin recognition by the proteasome.2017

    • Author(s)
      Saeki, Y.
    • Journal Title

      J. Biochem.

      Volume: 161 Pages: 113-124

    • DOI

      10.1093/jb/mvw091

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] In Vivo Ubiquitin Linkage-type Analysis Reveals that the Cdc48-Rad23/Dsk2 Axis Contributes to K48-linked Chain Specificity of the Proteasome.2017

    • Author(s)
      Tsuchiya, H., Ohtake, F., Arai, N., Kaiho, A., Yasuda, S., Tanaka, K., and Saeki, Y.
    • Journal Title

      Mol Cell

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Acknowledgement Compliant
  • [Journal Article] 分子標的薬「プロテアソーム阻害剤」2016

    • Author(s)
      佐伯 泰
    • Journal Title

      腎臓内科・泌尿器科

      Volume: 4 Pages: 30-38

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Structure, dynamics and functions of the proteasome2015

    • Author(s)
      佐伯泰
    • Journal Title

      生化学

      Volume: 87 Issue: 6 Pages: 705-722

    • DOI

      10.14952/SEIKAGAKU.2015.870705

    • NAID

      40020687379

    • ISSN
      0037-1017
    • Year and Date
      2015-12-25
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pba3-Pba4 heterodimer acts as a molecular matchmaker in proteasome α-ring formation2014

    • Author(s)
      Takagi, K., Saeki, Y., Yashiroda, H., Yagi, H., Kaiho, A., Murata, S., Yamane, T., Tanaka, K., Mizushima, T. and Kato, K.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 450 Issue: 2 Pages: 1110-1114

    • DOI

      10.1016/j.bbrc.2014.06.119

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] p97およびRAD23によるプロテアソーム分解制御2017

    • Author(s)
      佐伯 泰
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Cdc48/p97-Rad23軸がプロテアソーム分解の主要経路である2016

    • Author(s)
      佐伯 泰
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Elucidating the proteasome dynamics and cellular ubiquitin code2014

    • Author(s)
      Yasushi Saeki
    • Organizer
      The 5th International Symposium on Life Science in Toyama
    • Place of Presentation
      富山大学(富山)
    • Year and Date
      2014-12-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] プロテアソームの分子集合と動態に関する研究2014

    • Author(s)
      佐伯 泰
    • Organizer
      日本生化学会 平成26年度奨励賞受賞講演
    • Place of Presentation
      国立京都国際会館(京都)
    • Year and Date
      2014-10-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] タンパク質分解装置プロテアソームの細胞内動態2014

    • Author(s)
      佐伯 泰
    • Organizer
      第21回酵母合同シンポジウム
    • Place of Presentation
      東京大学(東京)
    • Year and Date
      2014-09-03 – 2014-09-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] プロテアソームの細胞内動態2014

    • Author(s)
      佐伯 泰
    • Organizer
      第19回日本病態プロテアーゼ学会学術集会シンポジウム
    • Place of Presentation
      千里ライフサイエンスセンター(大阪)
    • Year and Date
      2014-08-08 – 2014-08-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] 実験医学2017

    • Author(s)
      佐伯 泰、土屋光、大竹史明、田中啓二
    • Total Pages
      8
    • Publisher
      羊土社
    • ISBN
      9784758125000
    • Related Report
      2017 Annual Research Report
  • [Book] 生物物理「プロテアソームの細胞内動態と機能」2015

    • Author(s)
      佐伯 泰
    • Total Pages
      4
    • Publisher
      日本生物物理学会
    • Related Report
      2014 Annual Research Report
  • [Book] 実験医学・増刊号「構造生命科学で何がわかるのか何ができるのか」2014

    • Author(s)
      佐伯 泰,水島恒裕
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2014 Annual Research Report
  • [Book] 細胞工学HOT PRESS「プロテアソームの細胞内ダイナミクス」2014

    • Author(s)
      佐伯 泰,白 燦基
    • Total Pages
      3
    • Publisher
      秀潤社
    • Related Report
      2014 Annual Research Report
  • [Remarks] 公益財団法人東京都医学総合研究所蛋白質代謝研究室ホームページ

    • URL

      http://www.igakuken.or.jp/pro-meta/

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
  • [Remarks] ユビキチン鎖の長さを決定する方法を世界で初めて開発

    • URL

      http://www.igakuken.or.jp/topics/2018/0206.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] ユビキチン化基質がプロテアソームに運ばれる仕組み

    • URL

      http://www.igakuken.or.jp/topics/2017/0519.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] ライフサイエンス 新着論文レビュー

    • URL

      http://first.lifesciencedb.jp/archives/16636

    • Related Report
      2017 Annual Research Report
  • [Remarks] 蛋白質代謝研究室ホームページ

    • URL

      http://www.igakuken.or.jp/pro-meta/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 研究室ホームページ

    • URL

      http://www.igakuken.or.jp/pro-meta/

    • Related Report
      2014 Annual Research Report
  • [Remarks] タンパク質分解酵素複合体「プロテアソーム」の動態を解明

    • URL

      http://www.igakuken.or.jp/topics/2014/0306.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京都医学研など、「プロテアソーム」が完成後に核内に運ばれることを解明

    • URL

      http://news.mynavi.jp/news/2014/03/10/032/

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2019-03-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi