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Research on the molecular basis of conformational dynamics of oncogene product Ras for application to the development of its specific inhibitors

Research Project

Project/Area Number 26293026
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Drug development chemistry
Research InstitutionKobe University

Principal Investigator

shima fumi  神戸大学, 科学技術イノベーション研究科, 教授 (60335445)

Co-Investigator(Kenkyū-buntansha) 田中 成典  神戸大学, その他の研究科, 教授 (10379480)
熊坂 崇  公益財団法人高輝度光科学研究センター, その他部局等, 研究員 (30291066)
片岡 徹  神戸大学, 医学(系)研究科(研究院), 教授 (40144472)
松本 篤幸  神戸大学, 医学(系)研究科(研究院), 助教 (00753906)
Co-Investigator(Renkei-kenkyūsha) KITAHARA Ryou  立命館大学, 薬学部, 教授 (70512284)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2016: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Keywords医薬分子設計 / 分子標的薬 / がん / シグナル伝達 / がん遺伝子 / 癌
Outline of Final Research Achievements

ras proto-oncogene products Ras, is a member of small GTPases, which is frequently activated in a wide variety of human cancers, making them promising anti-cancer drug targets. In the present study, we determined the novel druggable pocket structure of Ras by Synchrotron X-ray crystallography utilizing Humid Air and Glue-coating (HAG) mounting method, which unveiled the molecular basis of conformational transition between the open and closed pocket structures. Molecular Dynamics simulation of the solved structures lead us to a reasonable agreement with experimental observations and the consequent scenarios on the transition. Further, crystal structure analysis of Ras/fragment-compound complex by cross-linking method gave us useful information on the structure-based design of Ras inhibitors.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (4 results)

All 2016 2015

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Book (1 results)

  • [Journal Article] Integrin-α10 dependency identifies RAC and RICTOR as therapeutic targets in high-grade myxofibrosarcoma.2016

    • Author(s)
      Okada T, Lee AY, Qin LX, Agaram N, Mimae T, Shen Y, O'Connor R, López-Lago MA, Craig A, Miller ML, Agius P, Molinelli E, Socci ND, Crago AM, Shima F, Sander C, Singer S.
    • Journal Title

      Cancer Discov.

      Volume: 6 Issue: 10 Pages: 1148-1165

    • DOI

      10.1158/2159-8290.cd-15-1481

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal.2016

    • Author(s)
      Matsumoto S, Miyano N, Baba S, Liao J, Kawamura T, Tsuda C, Takeda A, Yamamoto M, Kumasaka T, Kataoka T, Shima F.
    • Journal Title

      Sci Rep.

      Volume: - Issue: 1

    • DOI

      10.1038/srep25931

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Current statue of the development of Ras inhibitors2015

    • Author(s)
      Shima F, Matsumoto S, Yoshikawa Y, Kawamura T, Isa M, Kataoka T
    • Journal Title

      The Journal of Biochemistry

      Volume: 158 Pages: 91-99

    • NAID

      40020554051

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Book] がん分子標的治療2015

    • Author(s)
      Fumi Shima, Yoko Yoshikawa, Higeyuki Matsumoto, Tohru Kataoka
    • Total Pages
      166
    • Publisher
      メディカルレビュー社
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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