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Selective modification of histone methylation using DNA binding-small molecules

Research Project

Project/Area Number 26350977
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemical biology
Research InstitutionChiba University

Principal Investigator

Shinohara Ken-ichi  千葉大学, 大学院医学研究院, 特任助教 (70378561)

Co-Investigator(Renkei-kenkyūsha) KANEDA Atsushi  千葉大学, 大学院医学研究院, 教授 (10313024)
NEMOTO Tetsuhiro  千葉大学, 大学院薬学研究院, 特任助教 (80361450)
SUZUKI Takayoshi  京都府立医科大学, 大学院医学研究科, 教授 (90372838)
SUGIYAMA Hiroshi  京都大学, 大学院理学研究科, 教授 (50183843)
NAGASE Hiroki  千葉県がんセンター, 研究所, 所長 (90322073)
WATANABE Takayoshi  千葉県がんセンター, 研究所, 研究員 (60526060)
Research Collaborator YODA Natsumi  
FUKUYO Masaki  
TAKANE Kiyoko  
FUJIWARA Kyoko  
KITA Kazuko  
FUKUDA Noboru  
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsピロール・イミダゾール・ポリアミド / 核酸化学 / 発現制御 / エピゲノム / ヒストンメチル化 / DNA配列認識 / エピゲノム制御 / ピロール・イミダゾールポリアミド / ピロール-イミダゾールポリアミド / エピジェネティクス
Outline of Final Research Achievements

Aberrant DNA methylation and histone modification cause major epigenetic changes and have been implicated in cancer growth. While drugs for epigenome such as SAHA and decitabine can be available for cancer treatment, site-specific modification of epigenome is now requested to be technically achieved. Pyrrole-imidazole polyamides are small molecules that can be designed to recognize and bind to particular DNA sequences. In this study, we synthesized PIP-LSD1 inhibitor conjugates and investigated whether the conjugates show site-selective changing of histone methylation. The results in this study indicate that PIP-inhibitor conjugates induced histone methylation where single inhibitor could not change. In addition, it is shown that PIP can act as sequence-specific antagonists of CpG methylation in living cells.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (13 results)

All 2017 2016 2015 2014

All Journal Article (9 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 8 results,  Acknowledgement Compliant: 5 results,  Open Access: 7 results) Presentation (2 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Synthesis of Pyrrole-Imidazole Polyamide Oligomers Based on a Copper-Catalyzed Cross-Coupling Strategy.2017

    • Author(s)
      Shiga N, Takayanagi S, Muramoto R, Murakami T, Qin R, Suzuki Y, Shinohara K, Kaneda A, Nemoto T.
    • Journal Title

      Bioorg Med Chem Lett,

      Volume: 27 Issue: 10 Pages: 2197-2200

    • DOI

      10.1016/j.bmcl.2017.03.052

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] ゲノム領域選択的なエピゲノム制御アプローチ2017

    • Author(s)
      篠原憲一、金田篤志
    • Journal Title

      Medical Science Digest

      Volume: 43 Pages: 116-121

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Platinum-Catalyzed Friedel-Crafts-Type C–H Coupling–Allylic Amination Cascade to Synthesize 3,4-Fused Tricyclic Indoles2016

    • Author(s)
      Yuta Suzuki, Yuito Tanaka, Shun-ichi Nakano, Kousuke Dodo, Natsumi Yoda, Ken-ichi Shinohara, Kazuko Kita, Atushi Kaneda, Mikiko Sodeoka, Yasumasa Hamada, and Tetsuhiro Nemoto
    • Journal Title

      Chem. Eur. J.

      Volume: 22 Issue: 13 Pages: 4418-4421

    • DOI

      10.1002/chem.201600375

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Double beta-alanine substitutions incorporated in 12-ring pyrrole-Imidazole Polyamides for lengthened DNA minor groove recognition.2016

    • Author(s)
      Watanabe T, Shinohara K, Shinozaki Y, Uekusa S, Wang X, Koshikawa N, Hiraoka K, Inoue T, Lin J, Bando T, Sugiyama H and Nagase H.
    • Journal Title

      Advanced Techniques in Biology & Medicine.

      Volume: 4 Issue: 02 Pages: 175-175

    • DOI

      10.4172/2379-1764.1000175

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Inhibition of DNA methylation at the MLH1 promoter region using pyrrole-imidazole polyamide.2016

    • Author(s)
      Shinohara K, Yoda N, Takane K, Watanabe T, Fukuyo M, Fujiwara K, Kita K, Nagase H, Nemoto T, Kaneda A.
    • Journal Title

      ACS Omega

      Volume: 1 Issue: 6 Pages: 1164-1172

    • DOI

      10.1021/acsomega.6b00229

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Modulation of the EMT/MET Process by Pyrrole-Imidazole Polyamide Targeting Human Transforming Growth Factor-β1.2015

    • Author(s)
      Saito, K.; Fukuda, N.; Shinohara, K.; Masuhiro, Y.; Hanazawa, S.; Matsuda, H.; Fujiwara, K.; Ueno, T.; Soma, M.
    • Journal Title

      Int. J. Biochem. Cell Biol.

      Volume: 66 Pages: 112-20

    • DOI

      10.1016/j.biocel.2015.07.011

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Silencing of RUNX2 enhances gemcitabine sensitivity of p53-deficient human pancreatic cancer AsPC-1 cells through the stimulation of TAp63-mediated cell death.2015

    • Author(s)
      Sugimoto H, Nakamura M, Yoda H, Hiraoka K, Shinohara K, Sang M, Fujiwara K, Shimozato O, Nagase H, Ozaki T.
    • Journal Title

      Cell Death Discovery

      Volume: 6 Issue: 10 Pages: e1914-e1914

    • DOI

      10.1038/cddis.2015.242

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Inhibition of KRAS Codon 12 Mutants Using a Novel DNA-alkylating Pyrrole-imidazole Polyamide Conjugate2015

    • Author(s)
      Hiraoka, K.; Inoue, T.; Taylor, R. D.; Watanabe, T.; Koshikawa, N.; Yoda, H.; Shinohara, K.; Takatori, A.; Sugimoto, K.; Maru, Y.; Denda, T.; Fujiwara, K.; Balmain, A.; Ozaki, T.; Bando, T.; Sugiyama, H.; Nagase, H.
    • Journal Title

      Nature. Comm.

      Volume: in press

    • NAID

      120006460100

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Inhibition of KRAS codon 12 mutants using a novel DNA-alkylating pyrrole-imidazole polyamide conjugate.2014

    • Author(s)
      Hiraoka K, Inoue T, Taylor RD, Watanabe T, Koshikawa N, Yoda H, Shinohara K, Takatori A, Sugimoto H, Maru Y, Denda T, Fujiwara K, Balmain A, Ozaki T, Bando T, Sugiyama H, Nagase H.
    • Journal Title

      Nat. Commun.

      Volume: 6 Issue: 1 Pages: 6706-6706

    • DOI

      10.1038/ncomms7706

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] DNA結合小分子を用いた選択的DNAメチル化阻害2016

    • Author(s)
      篠原憲一
    • Organizer
      日本ケミカルバイオロジー学会 第11回年会
    • Place of Presentation
      京都テルサ テルサホール(京都府・京都市)
    • Year and Date
      2016-06-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA配列認識小分子によるエピゲノム制御2015

    • Author(s)
      篠原憲一, 依田夏美, 渡部隆義, 永瀬浩喜, 金田篤志
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市中央区)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Patent(Industrial Property Rights)] 配列特異的で設計可能な標的遺伝子の転写抑制阻害剤およびこれを含む組成物並び にその使用2017

    • Inventor(s)
      金田篤志、篠原憲一、根本哲宏
    • Industrial Property Rights Holder
      金田篤志、篠原憲一、根本哲宏
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017-02-01
    • Related Report
      2016 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 遷移金属触媒反応を利用した 3,4 位中員環縮環 3-アルキリデンインドリ ン類、および 3,4 位中員環縮インドール類の合成法2016

    • Inventor(s)
      根本哲宏、濱田康正、鈴木雄太、仲野駿一、篠原憲一、金田篤志、他
    • Industrial Property Rights Holder
      根本哲宏、濱田康正、鈴木雄太、仲野駿一、篠原憲一、金田篤志、他
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-08-12
    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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