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Improved unroofing method in AFM and cryo-electron microscopy to observe the interaction between organelles and cytoskeleton.

Research Project

Project/Area Number 26650049
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionNagoya University

Principal Investigator

Usukura Jiro  名古屋大学, 理学(系)研究科(研究院), 研究員 (30143415)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords細胞膜剥離法 / 細胞骨格 / 滑面小胞体 / クライオ電顕 / 原子間力顕微鏡 / アクチン / 膜 / アクチン線維 / クラスリン / 電子顕微鏡 / バイオイメージング
Outline of Final Research Achievements

Two unroofing methods via tearing off cell membrane with adhesive mesh and sonication developed and used for AFM and cryo-electron microscopy instead of vitreous ice section. An improved unroofing method enabled the cantilever of AFM to reach directly into a cell to visualize the intracellular cytoskeletal actin filaments, microtubules, clathrin coats, and caveolae in PBS at molecular resolution. The actin filaments clearly exhibited a short periodicity of approximately 5-6 nm. In cryo electron microscopy, unroofing enabled us to view membrane cytoskeleton panoramically with extremely high contrast in native state. Many actin filaments and microtubules were observed clearly on the cytoplasmic surface of the plasma membrane at extremely high contrast, because soluble components of cytoplasm flowed out on breaking off the cells. Furthermore, Cryo-EM combined with unroofing revealed a network of smooth ER beneath the cell membrane first time in native ordinary cells.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (14 results)

All 2016 2015 2014 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (9 results) (of which Int'l Joint Research: 5 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] ROR1 sustains caveolae and survival signaling as a scaffold of cavin-1 and caveolin-12016

    • Author(s)
      Yamaguchi T, Lu C, Yanagisawa K, Can Lu, Usukura J, Cheng J, Hotta N, Shimada Y, Ida R, Isomura H, Suzuki M, Fujimoto T, Takahashi T
    • Journal Title

      Nat Commun

      Volume: 7 Issue: 1 Pages: 10060-10060

    • DOI

      10.1038/ncomms10060

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Imaging of the Subsurface Structures of “Unroofed” Plasmodium falciparum-infected Erythrocytes2015

    • Author(s)
      Eri H. Hayakawa, Fuyuki Tokumasub, Jiro Usukura, Hiroyuki Matsuoka, Takafumi Tsuboi, and Thomas E. Wellems
    • Journal Title

      Experimental Parasitology

      Volume: 153 Pages: 174-179

    • DOI

      10.1016/j.exppara.2015.03.021

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Protein-4.1G-Mediated Membrane Trafficking Is Essential for Correct Rod Synaptic Location in the Retina and for Normal Visual Function.2015

    • Author(s)
      Sanuki R, Watanabe S, Sugita Y, Irie S, Kozuka T, Shimada M, Ueno S, Usukura J, Furukawa T.
    • Journal Title

      Cell Reports

      Volume: 10 Issue: 5 Pages: 796-808

    • DOI

      10.1016/j.celrep.2015.01.005

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cooperative binding of the outer arm docking complex underlies the regular arrangement of outer arm dynein in the axoneme.2014

    • Author(s)
      Mikito Owa, Akane Furuta, Jiro Usukura, Fumio Arisaka, Stephen M. King, George B. Witman, Ritsu Kamiya, Ken-ichi Wakabayashi
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111(26) Issue: 26 Pages: 9455-9460

    • DOI

      10.1073/pnas.1403101111

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Unroofing methods in AFM imaging for intra-cellar cytoskeletons at molecular resolution2015

    • Author(s)
      10.Usukura E, Narita A, Yagi A, Ito S, Usukura J
    • Organizer
      Annual Meeting of the American Society for Cell Biology
    • Place of Presentation
      Diego Convention Center, Sandiego, CA ,USA
    • Year and Date
      2015-12-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of low voltage cryo-electron microscope for simultaneous imaging of bright field, dark field STEM and SEM using unroofed frozen cells.2015

    • Author(s)
      Usukura J, Matsumoto T, Usukura E, Oharai Y, Sunaoshi T, Tamochi R, Narita A
    • Organizer
      Annual Meeting of the American Society for Cell Biology
    • Place of Presentation
      San Diego Convention Center, Sandiego, CA ,USA
    • Year and Date
      2015-12-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of low voltage cryo-electron microscope for simultaneous imaging of bright field, dark field STEM and SEM using unroofed frozen cells2015

    • Author(s)
      Usukura J
    • Organizer
      Microscopy Conference 2015
    • Place of Presentation
      Georg-August-University Gottingen, Germany
    • Year and Date
      2015-09-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High resolution AFM direct imaging of the intra-cellular cytoskeleton by using unroofed cells2015

    • Author(s)
      Usukura J
    • Organizer
      Multinational Congress on Microscopy
    • Place of Presentation
      Hotel Eger& Park, Eger, Hungary
    • Year and Date
      2015-08-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Use of the unroofing technique AFMdirect imaging of the intra-cellular structure at high resolution2015

    • Author(s)
      Usukura J, Usukura E, Narita A, Yagi A, Ito S
    • Organizer
      Microscopy & Microanalysis
    • Place of Presentation
      Oregon Convention Center Portland, Oregon, USA
    • Year and Date
      2015-08-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Spatial organization ofnuclear membrane cytoskeleton2014

    • Author(s)
      Jiro Usukura, Shiho Minakata
    • Organizer
      Annal meeting of American Society of Cell Biology
    • Place of Presentation
      Philadelphia, PA, USA
    • Year and Date
      2014-12-06 – 2014-12-10
    • Related Report
      2014 Research-status Report
  • [Presentation] Simultaneous imaging of cry-bright field, dark field STEM and SEM using unroofed living cells.2014

    • Author(s)
      Jiro Usukura, Shiho Minakata
    • Organizer
      International Microscopy Congress 2014
    • Place of Presentation
      Prague, Czech Republic
    • Year and Date
      2014-09-07 – 2014-09-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Simultaneous imaging of cry-bright field, dark field STEM and SEM using unroofed living cells with special reference to membrane cytoskeletons.2014

    • Author(s)
      Jiro Usukura, Shiho Minakata
    • Organizer
      Microscopy & Microanalysis 2014
    • Place of Presentation
      Hartford, CT, USA
    • Year and Date
      2014-08-03 – 2014-08-07
    • Related Report
      2014 Research-status Report
  • [Presentation] クライオSTEMによる細胞膜骨格の暗視野像、明視野像、虹電子像の同時計測2014

    • Author(s)
      臼倉治郎、南方志帆
    • Organizer
      日本電子顕微鏡学会
    • Place of Presentation
      幕張メッセ
    • Year and Date
      2014-05-11 – 2014-05-13
    • Related Report
      2014 Research-status Report
  • [Remarks] 理学研究科構造生物学研究センター 臼倉機器開発プロジェクト

    • URL

      http://str.bio.nagoya-u.ac.jp

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-04-04   Modified: 2017-05-10  

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