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Study on spatial organization of chromosomes mediated by small RNA

Research Project

Project/Area Number 26840009
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionOsaka University

Principal Investigator

KAWAKAMI Kei  大阪大学, 生命機能研究科, 特任研究員 (00722836)

Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsヘテロクロマチン / 核内構造 / 低分子RNA / 分裂酵母 / RNAi / 核構造 / 染色体 / 小分子RNA / セントロメア
Outline of Final Research Achievements

Although It is known that heterochromatin (HC) structure that suppresses the gene expression is clustered at nuclear periphery or around the nucleolus, its mechanism and biological significance are not well understood. In this study, I aimed to clarify the mechanism of HC cluster formation using fission yeast as a model organism. A system capable of artificially inducing HC dependent on small RNAs was constructed in the arm of the chromosome. The behavior of this artificially induced HC in the nucleus was analyzed in detail by the 3C method (Chromosome Conformation Capture). As a result, we reveled this artificially induced HC region spatially interacts with the native HC region such as centromere and telomere at the chromatin level. This result clearly showed that the RNAi-dependent HC structure has the ability to form clusters in the nucleus.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (5 results)

All 2017 2016 2015

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (3 results) (of which Int'l Joint Research: 3 results) Book (1 results)

  • [Journal Article] Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.2016

    • Author(s)
      Tange Y, Chikashige Y, Takahata S, Kawakami K, Higashi M, Mori C, Kojidani T, Hirano Y, Asakawa H, Murakami Y, Haraguchi T, Hiraoka Y.
    • Journal Title

      Genes to Cells

      Volume: 21 Issue: 8 Pages: 812-832

    • DOI

      10.1111/gtc.12385

    • NAID

      120005906898

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Histone methyltransferase complex CLRC ubiquitinates and degrades the putative histone demethylase Epe1 to facilitate heterochromatin assembly2017

    • Author(s)
      Kei Kawakami
    • Organizer
      The 9th International Fission Yeast Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Histone methyltransferase complex CLRC regulates heterochromatin spreading2015

    • Author(s)
      Kei Kawakami and Kojiro Ishii
    • Organizer
      内藤カンファレンス
    • Place of Presentation
      シャトレーゼガトーキングダム札幌(北海道札幌市)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Histone methyltransferase complex CLRC regulates heterochromatin spreading independently of RNAi2015

    • Author(s)
      Kei Kawakami and Kojiro Ishii
    • Organizer
      8th international fission yeast meeting 2015
    • Place of Presentation
      生田神社会館(兵庫県神戸市)
    • Year and Date
      2015-06-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Book] ノンコーディングRNA RNA分子の全体像を俯瞰する2016

    • Author(s)
      川上慶、道家康平、石井浩二郎
    • Total Pages
      372
    • Publisher
      化学同人
    • Related Report
      2016 Research-status Report

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Published: 2014-04-04   Modified: 2019-03-29  

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