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Mutational robustness in ribozyme quasispecies

研究課題

研究課題/領域番号 16K14790
研究種目

挑戦的萌芽研究

配分区分基金
研究分野 進化生物学
研究機関沖縄科学技術大学院大学

研究代表者

ディアスアリナス キャロライナ  沖縄科学技術大学院大学, 核酸化学・工学ユニット, 研究員 (60773322)

研究期間 (年度) 2016-04-01 – 2018-03-31
研究課題ステータス 中途終了 (2017年度)
配分額 *注記
3,770千円 (直接経費: 2,900千円、間接経費: 870千円)
2017年度: 1,950千円 (直接経費: 1,500千円、間接経費: 450千円)
2016年度: 1,820千円 (直接経費: 1,400千円、間接経費: 420千円)
キーワードMutational Robustness / Quasispecies / Mutational robustness / evolution / mutations / molecular biology / mutational robustness
研究実績の概要

The aim of the work is to better understand why viral populations under mutagenic pressures can often develop resistant to mutagenic drugs rendering antiviral treatments ineffective.
To better understand the molecular underpinning of the extended time to extinction exhibited by populations evolving under mutagenized environmental pressure, during the second FY, I finished measuring fitness values, population sizes with two methods, and to be conservative I redraw the networks after removing single sequences potentially attributable to sequencing errors, cofounding the results.
The conservative networks show real genotypic networks for mutagenic treatments, while for the non-mutagenic treatment the complexity of the network largely dropped. There is a clear difference in the amount of genotypic complexity build up in mutagenic treatments. This is key because mutagens have the potential effect of creating evolutionary potential. It is indeed a problem with antiviral therapies: not knowing exactly how much mutagen to add.
We also found an important confounding effect of the mutagen used that can help explain the survival of the mutagenized populations (opposite to populations with no mutagen added that went extinct). The increase in population size effect observed, can counteract decreases in size caused by the accumulation of deleterious mutations and/or stochastic effects. These results are provocative and are in process of publication.

報告書

(2件)
  • 2017 実績報告書
  • 2016 実施状況報告書
  • 研究成果

    (2件)

すべて 2016

すべて 学会発表 (1件) 学会・シンポジウム開催 (1件)

  • [学会発表] Mutational robustness in ribozyme populations2016

    • 著者名/発表者名
      Carolina Diaz Arenas
    • 学会等名
      International Workshop on Genotypes-Phenotype Maps
    • 発表場所
      University of Cambridge
    • 関連する報告書
      2016 実施状況報告書
  • [学会・シンポジウム開催] International Workshop on Genotype to Phenotype Maps2016

    • 発表場所
      University of Cambridge, Cambridge, UK.
    • 年月日
      2016-09-08
    • 関連する報告書
      2016 実施状況報告書

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公開日: 2016-04-21   更新日: 2018-12-17  

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